DK944751 |
Clone id |
YMU02A01NGRL0007_B11 |
Library |
YMU02 |
Length |
589 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0007_B11. 5' end sequence. |
Accession |
DK944751 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
CAGCTCATCTGTTGTAAATACGGTTTAGTTTCCTTTTATTGCAAAGGGTGGAGGACCCTA TGGTCAAGAAGTTACCAGAGGCTTGGATCATCTTTCAGGGAAATACTTTAGTGGAAAAAC TCTCATCAAGCAGGATTTCAAAGCGGTATGAATGTTTATCTGCTGCATGTGTGTATGAGA GAGAGACAGAGAGAGAGGCACACTCATGGGGGTCGAGGTAGAGCTGTGGAGGGATTTTGC CGGTGGGTTGACTTCTTCATTTGCGACCACCTCATTTTAGAGGATGACAGGATCATGATT ATACCGCCGCCACTATGCATGTGTGATGCAAGAGACCTAAGAGCAGCCAGGAGCAAGAAG CAACTATGAGAGATCGAGGGTGCAGGAGCTACGTTGAAGAGGCTTAGAGAATAGAGCTTC AGATAAGATGGTGGCTGATGTTTAATTAATAGATGCCCTGACCGCAGTTCAAGGTAGCTC CATATCATACGCAATGCGGTACCCCGAGCCCGACCAGATCAAAGCAGGCATGAGTGCTCA GAAACTTGAAAGCTAGGAGTTTTTGCCCACATATAATTGAGGTTCTGTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O22160 |
Definition |
sp|O22160|TL15A_ARATH Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis thaliana |
Align length |
33 |
Score (bit) |
53.9 |
E-value |
6.0e-07 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9ARP1 |
Definition |
tr|Q9ARP1|Q9ARP1_ORYSJ cDNA clone:001-008-F11, full insert sequence OS=Oryza sativa subsp. japonica |
Align length |
33 |
Score (bit) |
54.3 |
E-value |
5.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944751|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0007_B11, 5' (589 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9ARP1|Q9ARP1_ORYSJ cDNA clone:001-008-F11, full insert seque... 54 5e-06 tr|B8AD81|B8AD81_ORYSI Putative uncharacterized protein OS=Oryza... 54 5e-06 tr|A7PIQ4|A7PIQ4_VITVI Chromosome chr13 scaffold_17, whole genom... 54 5e-06 tr|A5BEJ1|A5BEJ1_VITVI Putative uncharacterized protein OS=Vitis... 54 5e-06 tr|A2ZP56|A2ZP56_ORYSJ Putative uncharacterized protein OS=Oryza... 54 5e-06 tr|B6SK74|B6SK74_MAIZE Uncharacterized low-complexity proteins O... 54 7e-06 tr|A9P046|A9P046_PICSI Putative uncharacterized protein OS=Picea... 54 7e-06 tr|A9SAY8|A9SAY8_PHYPA Predicted protein (Fragment) OS=Physcomit... 52 3e-05 tr|A9V493|A9V493_MONBE Predicted protein OS=Monosiga brevicollis... 34 5.4 tr|A4Y6N6|A4Y6N6_SHEPC Putative uncharacterized protein OS=Shewa... 34 7.1 tr|A1RJU5|A1RJU5_SHESW Putative uncharacterized protein OS=Shewa... 34 7.1 tr|A2UZG6|A2UZG6_SHEPU Putative uncharacterized protein OS=Shewa... 34 7.1
>tr|Q9ARP1|Q9ARP1_ORYSJ cDNA clone:001-008-F11, full insert sequence OS=Oryza sativa subsp. japonica GN=P0024G09.30 PE=2 SV=1 Length = 198
Score = 54.3 bits (129), Expect = 5e-06 Identities = 26/33 (78%), Positives = 30/33 (90%) Frame = +2
Query: 44 KGGGPYGQEVTRGLDHLSGKYFSGKTLIKQDFK 142 KGGGPYGQ+VTRG D L+GK FSG+TLI+QDFK Sbjct: 57 KGGGPYGQQVTRGQD-LTGKDFSGQTLIRQDFK 88
>tr|B8AD81|B8AD81_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00358 PE=4 SV=1 Length = 191
Score = 54.3 bits (129), Expect = 5e-06 Identities = 26/33 (78%), Positives = 30/33 (90%) Frame = +2
Query: 44 KGGGPYGQEVTRGLDHLSGKYFSGKTLIKQDFK 142 KGGGPYGQ+VTRG D L+GK FSG+TLI+QDFK Sbjct: 57 KGGGPYGQQVTRGQD-LTGKDFSGQTLIRQDFK 88
>tr|A7PIQ4|A7PIQ4_VITVI Chromosome chr13 scaffold_17, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00018433001 PE=4 SV=1 Length = 221
Score = 54.3 bits (129), Expect = 5e-06 Identities = 27/33 (81%), Positives = 29/33 (87%) Frame = +2
Query: 44 KGGGPYGQEVTRGLDHLSGKYFSGKTLIKQDFK 142 KGGGPYG EVTRG D L+GK FSGK+LIKQDFK Sbjct: 80 KGGGPYGAEVTRGQD-LTGKDFSGKSLIKQDFK 111
>tr|A5BEJ1|A5BEJ1_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013914 PE=4 SV=1 Length = 221
Score = 54.3 bits (129), Expect = 5e-06 Identities = 27/33 (81%), Positives = 29/33 (87%) Frame = +2
Query: 44 KGGGPYGQEVTRGLDHLSGKYFSGKTLIKQDFK 142 KGGGPYG EVTRG D L+GK FSGK+LIKQDFK Sbjct: 80 KGGGPYGAEVTRGQD-LTGKDFSGKSLIKQDFK 111
>tr|A2ZP56|A2ZP56_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_000328 PE=4 SV=1 Length = 550
Score = 54.3 bits (129), Expect = 5e-06 Identities = 26/33 (78%), Positives = 30/33 (90%) Frame = +2
Query: 44 KGGGPYGQEVTRGLDHLSGKYFSGKTLIKQDFK 142 KGGGPYGQ+VTRG D L+GK FSG+TLI+QDFK Sbjct: 57 KGGGPYGQQVTRGQD-LTGKDFSGQTLIRQDFK 88
>tr|B6SK74|B6SK74_MAIZE Uncharacterized low-complexity proteins OS=Zea mays PE=2 SV=1 Length = 220
Score = 53.9 bits (128), Expect = 7e-06 Identities = 27/33 (81%), Positives = 29/33 (87%) Frame = +2
Query: 44 KGGGPYGQEVTRGLDHLSGKYFSGKTLIKQDFK 142 KGGGPYGQ VTRG D LSGK FSG+TLI+QDFK Sbjct: 79 KGGGPYGQGVTRGQD-LSGKDFSGQTLIRQDFK 110
>tr|A9P046|A9P046_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 237
Score = 53.9 bits (128), Expect = 7e-06 Identities = 27/33 (81%), Positives = 28/33 (84%) Frame = +2
Query: 44 KGGGPYGQEVTRGLDHLSGKYFSGKTLIKQDFK 142 KGGGPYG EVTRG D LSGK FSGK LI+QDFK Sbjct: 97 KGGGPYGAEVTRGAD-LSGKDFSGKNLIQQDFK 128
>tr|A9SAY8|A9SAY8_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_126894 PE=4 SV=1 Length = 165
Score = 52.0 bits (123), Expect = 3e-05 Identities = 25/33 (75%), Positives = 29/33 (87%) Frame = +2
Query: 44 KGGGPYGQEVTRGLDHLSGKYFSGKTLIKQDFK 142 +GGGPYGQEVTRG D L+G+ +SG TLIKQDFK Sbjct: 24 RGGGPYGQEVTRGQD-LTGRDYSGLTLIKQDFK 55
>tr|A9V493|A9V493_MONBE Predicted protein OS=Monosiga brevicollis GN=33227 PE=4 SV=1 Length = 405
Score = 34.3 bits (77), Expect = 5.4 Identities = 18/36 (50%), Positives = 21/36 (58%) Frame = -2
Query: 234 SLHSSTSTPMSVPLSLSLSHTHMQQINIHTALKSCL 127 SL S S P+ + LSLSLSHTH + HT CL Sbjct: 83 SLSLSLSQPIHLSLSLSLSHTHNTHTHTHTHPHLCL 118
>tr|A4Y6N6|A4Y6N6_SHEPC Putative uncharacterized protein OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=Sputcn32_1896 PE=4 SV=1 Length = 1305
Score = 33.9 bits (76), Expect = 7.1 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Frame = +1
Query: 211 GRGRAVEGFCRWVDFFICDHLILEDDRIMIIPPPLCMCD-ARDLRAARSKKQL*EIEG 381 G GR V G RW L +E D++ +I PPL + D + DL + S +QL E++G Sbjct: 967 GLGR-VSGNLRWPQGLFSGELAIEGDKLAVIQPPLAILDISPDLTLSFSSEQL-EVKG 1022
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