DK945100 |
Clone id |
YMU02A01NGRL0008_D17 |
Library |
YMU02 |
Length |
526 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_D17. 5' end sequence. |
Accession |
DK945100 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
CGTGGCGGCCCTCTCGCTGGCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGCGCGC GCACGCGTGTGTTCTAGGCAGAGCTACATTATTTTGCAGGGATCCTGAAGCGGAATGTCT CCTGGTGCTGGTTCGCGCTGGATTAAACCAGAGATATGGCCCTTGTTTGCCGCAGTAGGA ACCGCGGTGGGCTTGTGCGGCTTCACAATGTTTCGCTCCATCACTGCTCATCCTGATGTC AGGGTGAACAAAGGTGACCGAGCTGCTGGTTATTTGGAGAACTTTGAAGAGGGTGAGCAA TTCAAGGAGCATGCTTTTCGCCGATTTCTGAGCGATAAACACCCCGAAATTTTCCACACA ATAAACAAAATTTTCAGCGAGCGAGAGTGAAAAATTATTATTATTTGGAGAAGATTCTCT GAGCATCTCATGTCATTCATGCCAGCAATTGGTGGCACATTTTTCCAAAAACTAGCTAGA ATAAAATAACACACTGTGATCAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P59590 |
Definition |
sp|P59590|FIMC_ECOL6 Chaperone protein fimC OS=Escherichia coli O6 |
Align length |
109 |
Score (bit) |
30.8 |
E-value |
3.7 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q654W0 |
Definition |
tr|Q654W0|Q654W0_ORYSJ Os06g0246000 protein OS=Oryza sativa subsp. japonica |
Align length |
82 |
Score (bit) |
112.0 |
E-value |
8.0e-24 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945100|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0008_D17, 5' (501 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q654W0|Q654W0_ORYSJ Os06g0246000 protein OS=Oryza sativa subs... 112 8e-24 tr|O22414|O22414_ORYSA HvB12D homolog (Putative G-box binding pr... 112 8e-24 tr|A6MZE4|A6MZE4_ORYSI Putative uncharacterized protein OS=Oryza... 112 8e-24 tr|B6T1H8|B6T1H8_MAIZE B12D protein OS=Zea mays PE=4 SV=1 110 3e-23 tr|B6T144|B6T144_MAIZE B12D protein OS=Zea mays PE=4 SV=1 110 5e-23 tr|Q9XHD5|Q9XHD5_IPOBA B12D protein OS=Ipomoea batatas PE=4 SV=1 109 8e-23 tr|A7QBT2|A7QBT2_VITVI Chromosome chr1 scaffold_75, whole genome... 107 2e-22 tr|A7PD80|A7PD80_VITVI Chromosome chr17 scaffold_12, whole genom... 107 3e-22 tr|A9TL71|A9TL71_PHYPA Predicted protein OS=Physcomitrella paten... 105 9e-22 tr|B7FH72|B7FH72_MEDTR Putative uncharacterized protein OS=Medic... 103 5e-21 tr|Q1H8M8|Q1H8M8_BETVU B12D-like protein OS=Beta vulgaris GN=b12... 103 6e-21 tr|Q40019|Q40019_HORVU HvB12D protein (B12Dg1 protein) OS=Hordeu... 102 1e-20 tr|A9PCV0|A9PCV0_POPTR Putative uncharacterized protein OS=Popul... 101 2e-20 tr|Q42338|Q42338_ARATH HVB12D homologue (B12D-like protein) OS=A... 100 5e-20 tr|A9TC09|A9TC09_PHYPA Predicted protein OS=Physcomitrella paten... 99 1e-19 tr|Q6YU35|Q6YU35_ORYSJ Os07g0274700 protein OS=Oryza sativa subs... 97 3e-19 tr|A2YK70|A2YK70_ORYSI Putative uncharacterized protein OS=Oryza... 97 3e-19 tr|Q6Z4G5|Q6Z4G5_ORYSJ Os07g0604600 protein OS=Oryza sativa subs... 96 7e-19 tr|B8B8B0|B8B8B0_ORYSI Putative uncharacterized protein OS=Oryza... 96 7e-19 tr|A9NTZ5|A9NTZ5_PICSI Putative uncharacterized protein OS=Picea... 95 2e-18 tr|B6UH23|B6UH23_MAIZE B12D protein OS=Zea mays PE=4 SV=1 92 1e-17 tr|B6T2Z0|B6T2Z0_MAIZE B12D protein OS=Zea mays PE=4 SV=1 92 1e-17 tr|A9RS59|A9RS59_PHYPA Predicted protein OS=Physcomitrella paten... 92 1e-17 tr|Q6Z4G4|Q6Z4G4_ORYSJ Os07g0604700 protein OS=Oryza sativa subs... 92 2e-17 tr|A2YNI0|A2YNI0_ORYSI Putative uncharacterized protein OS=Oryza... 92 2e-17 tr|B6T0R2|B6T0R2_MAIZE B12D protein OS=Zea mays PE=4 SV=1 90 7e-17 tr|Q6YU38|Q6YU38_ORYSJ Os07g0274400 protein OS=Oryza sativa subs... 89 2e-16 tr|B7EQS5|B7EQS5_ORYSJ cDNA clone:J023114G05, full insert sequen... 89 2e-16 tr|A9T1P7|A9T1P7_PHYPA Predicted protein (Fragment) OS=Physcomit... 89 2e-16 tr|A3BA80|A3BA80_ORYSJ Putative uncharacterized protein OS=Oryza... 89 2e-16
>tr|Q654W0|Q654W0_ORYSJ Os06g0246000 protein OS=Oryza sativa subsp. japonica GN=OJ1136_C11.3 PE=4 SV=1 Length = 89
Score = 112 bits (281), Expect = 8e-24 Identities = 49/82 (59%), Positives = 64/82 (78%) Frame = +1
Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315 RW++PE++PLFAA+G AVG+CGF +FR+IT +P+VRVNK RAAG LEN EEG ++ EH Sbjct: 5 RWVRPEVYPLFAAMGVAVGICGFQLFRNITGNPEVRVNKVGRAAGVLENHEEGRRYAEHG 64
Query: 316 FRRFLSDKHPEIFHTINKIFSE 381 R ++ DK PEI INK F+E Sbjct: 65 LRNYVRDKTPEIMPAINKFFTE 86
>tr|O22414|O22414_ORYSA HvB12D homolog (Putative G-box binding protein) OS=Oryza sativa PE=4 SV=1 Length = 89
Score = 112 bits (281), Expect = 8e-24 Identities = 49/82 (59%), Positives = 64/82 (78%) Frame = +1
Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315 RW++PE++PLFAA+G AVG+CGF +FR+IT +P+VRVNK RAAG LEN EEG ++ EH Sbjct: 5 RWVRPEVYPLFAAMGVAVGICGFQLFRNITGNPEVRVNKVGRAAGVLENHEEGRRYAEHG 64
Query: 316 FRRFLSDKHPEIFHTINKIFSE 381 R ++ DK PEI INK F+E Sbjct: 65 LRNYVRDKTPEIMPAINKFFTE 86
>tr|A6MZE4|A6MZE4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_22358 PE=4 SV=1 Length = 89
Score = 112 bits (281), Expect = 8e-24 Identities = 49/82 (59%), Positives = 64/82 (78%) Frame = +1
Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315 RW++PE++PLFAA+G AVG+CGF +FR+IT +P+VRVNK RAAG LEN EEG ++ EH Sbjct: 5 RWVRPEVYPLFAAMGVAVGICGFQLFRNITGNPEVRVNKVGRAAGVLENHEEGRRYAEHG 64
Query: 316 FRRFLSDKHPEIFHTINKIFSE 381 R ++ DK PEI INK F+E Sbjct: 65 LRNYVRDKTPEIMPAINKFFTE 86
>tr|B6T1H8|B6T1H8_MAIZE B12D protein OS=Zea mays PE=4 SV=1 Length = 87
Score = 110 bits (276), Expect = 3e-23 Identities = 48/82 (58%), Positives = 63/82 (76%) Frame = +1
Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315 RW++PE++PLFAA+G AVG+CGF +FR+IT +P+VRVNK RAAG LEN EEG ++ H Sbjct: 4 RWVRPEVYPLFAAMGVAVGICGFQLFRNITGNPEVRVNKAGRAAGVLENHEEGRRYAMHG 63
Query: 316 FRRFLSDKHPEIFHTINKIFSE 381 R F+ DK PEI INK F++ Sbjct: 64 LRSFVHDKTPEIMPAINKFFTD 85
>tr|B6T144|B6T144_MAIZE B12D protein OS=Zea mays PE=4 SV=1 Length = 87
Score = 110 bits (274), Expect = 5e-23 Identities = 47/82 (57%), Positives = 62/82 (75%) Frame = +1
Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315 RW++PE++PLFAA G AVG+CGF +FR+IT +P+VRVNK RAAG LEN EEG ++ H Sbjct: 4 RWVRPEVYPLFAATGVAVGICGFQLFRNITGNPEVRVNKAGRAAGVLENHEEGRRYAMHG 63
Query: 316 FRRFLSDKHPEIFHTINKIFSE 381 R F+ DK PEI +NK F++ Sbjct: 64 LRSFVHDKTPEIMPAVNKFFTD 85
>tr|Q9XHD5|Q9XHD5_IPOBA B12D protein OS=Ipomoea batatas PE=4 SV=1 Length = 90
Score = 109 bits (272), Expect = 8e-23 Identities = 45/82 (54%), Positives = 67/82 (81%) Frame = +1
Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315 RWI+PE++PLFAA+ AVG+CGF + R++T +P+VRVNK RAAG LEN+EEG+++ EH+ Sbjct: 5 RWIRPEVYPLFAAMSVAVGICGFQLIRNLTTNPEVRVNKEGRAAGVLENYEEGKKYAEHS 64
Query: 316 FRRFLSDKHPEIFHTINKIFSE 381 R+F+ +K PEI ++N+ FS+ Sbjct: 65 LRKFVRNKSPEIMPSLNRFFSD 86
>tr|A7QBT2|A7QBT2_VITVI Chromosome chr1 scaffold_75, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035098001 PE=4 SV=1 Length = 93
Score = 107 bits (268), Expect = 2e-22 Identities = 46/82 (56%), Positives = 64/82 (78%) Frame = +1
Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315 RW++PE++PLFAAVG AVG+CG + R+I +P+VRV K +R AG LENFEEGE++ EH Sbjct: 8 RWLRPEVYPLFAAVGVAVGICGMQLVRNICTNPEVRVTKQNRTAGVLENFEEGERYAEHR 67
Query: 316 FRRFLSDKHPEIFHTINKIFSE 381 R+F+ +K P+I +INK FS+ Sbjct: 68 LRKFVRNKEPQIMPSINKFFSD 89
>tr|A7PD80|A7PD80_VITVI Chromosome chr17 scaffold_12, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016171001 PE=4 SV=1 Length = 93
Score = 107 bits (267), Expect = 3e-22 Identities = 46/84 (54%), Positives = 66/84 (78%) Frame = +1
Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315 RW++PE++PLFAA+G AVG+CGF + R+I +PDVRV+K +RAAG LENF EG+++ EH Sbjct: 8 RWLRPEVYPLFAAMGVAVGICGFQLVRNICINPDVRVSKENRAAGVLENFTEGQKYSEHF 67
Query: 316 FRRFLSDKHPEIFHTINKIFSERE 387 R+++ +K PEI +IN FS+ E Sbjct: 68 LRKYVRNKSPEIMPSINSFFSDPE 91
>tr|A9TL71|A9TL71_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_223334 PE=4 SV=1 Length = 93
Score = 105 bits (263), Expect = 9e-22 Identities = 45/81 (55%), Positives = 62/81 (76%) Frame = +1
Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315 RWIKPEI+PLFAA+G A+G+CG++M R++ +PDVR+ K DRAAG LEN++EGE +K H Sbjct: 10 RWIKPEIYPLFAAIGAALGICGYSMARNLAINPDVRITKEDRAAGVLENYKEGEAYKMHG 69
Query: 316 FRRFLSDKHPEIFHTINKIFS 378 R++L + P+I IN FS Sbjct: 70 LRKYLQQQEPQIMPGINNYFS 90
>tr|B7FH72|B7FH72_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1 Length = 90
Score = 103 bits (257), Expect = 5e-21 Identities = 45/82 (54%), Positives = 62/82 (75%) Frame = +1
Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315 RWI+PE++PLFAAVG AVG+C F++ R+I +P+VRVNK RAAG LENF EGE++ EH Sbjct: 5 RWIRPEVYPLFAAVGAAVGICAFSLVRNICINPEVRVNKQSRAAGVLENFAEGEKYTEHL 64
Query: 316 FRRFLSDKHPEIFHTINKIFSE 381 R+F ++ PEI +N F++ Sbjct: 65 LRKFSRNRSPEIMPGLNSFFTD 86
|