DK945100
Clone id YMU02A01NGRL0008_D17
Library
Length 526
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_D17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
CGTGGCGGCCCTCTCGCTGGCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGCGCGC
GCACGCGTGTGTTCTAGGCAGAGCTACATTATTTTGCAGGGATCCTGAAGCGGAATGTCT
CCTGGTGCTGGTTCGCGCTGGATTAAACCAGAGATATGGCCCTTGTTTGCCGCAGTAGGA
ACCGCGGTGGGCTTGTGCGGCTTCACAATGTTTCGCTCCATCACTGCTCATCCTGATGTC
AGGGTGAACAAAGGTGACCGAGCTGCTGGTTATTTGGAGAACTTTGAAGAGGGTGAGCAA
TTCAAGGAGCATGCTTTTCGCCGATTTCTGAGCGATAAACACCCCGAAATTTTCCACACA
ATAAACAAAATTTTCAGCGAGCGAGAGTGAAAAATTATTATTATTTGGAGAAGATTCTCT
GAGCATCTCATGTCATTCATGCCAGCAATTGGTGGCACATTTTTCCAAAAACTAGCTAGA
ATAAAATAACACACTGTGATCAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P59590
Definition sp|P59590|FIMC_ECOL6 Chaperone protein fimC OS=Escherichia coli O6
Align length 109
Score (bit) 30.8
E-value 3.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945100|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_D17, 5'
(501 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P59590|FIMC_ECOL6 Chaperone protein fimC OS=Escherichia coli ... 31 3.7
sp|O94649|ATG2_SCHPO Autophagy-related protein 2 OS=Schizosaccha... 31 3.7
sp|Q9TSV4|TCF19_PIG Transcription factor 19 OS=Sus scrofa GN=TCF... 30 8.3
sp|Q7YR48|TCF19_PANTR Transcription factor 19 OS=Pan troglodytes... 30 8.3
sp|Q99KJ5|TCF19_MOUSE Transcription factor 19-like protein OS=Mu... 30 8.3
sp|Q9Y242|TCF19_HUMAN Transcription factor 19 OS=Homo sapiens GN... 30 8.3

>sp|P59590|FIMC_ECOL6 Chaperone protein fimC OS=Escherichia coli O6
GN=fimC PE=3 SV=1
Length = 241

Score = 30.8 bits (68), Expect = 3.7
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Frame = -2

Query: 470 FWKNVPPIAGMNDMRCSENLLQIIIIFHSRSLKILFIVWKIS-----GCLSLRNRRKACS 306
FW NV I M+ + +EN LQ+ II +K+ + K++ LR RR A S
Sbjct: 119 FWMNVKAIPSMDKSKLTENTLQLAII---SRIKLYYRPAKLALPPDQAAEKLRFRRSANS 175

Query: 305 LNCXXXXXXXXXXXXXXPLFTLTSG*AVMERNIVKPHKPTAVPTAANKG 159
L + L +G V+E +V P +AV ++ G
Sbjct: 176 LT------LINPTPYYLTVTELNAGTRVLENALVPPMGESAVKLPSDAG 218


>sp|O94649|ATG2_SCHPO Autophagy-related protein 2
OS=Schizosaccharomyces pombe GN=atg2 PE=1 SV=4
Length = 1646

Score = 30.8 bits (68), Expect = 3.7
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = -1

Query: 375 ENFVYCVENFGVFIAQKSAKSMLLELLTLFKVL--QITSSSVTFVHPDIRMSSD 220
++F + V+NF VFI++ E++ LFK L I SS VT V P+ ++SD
Sbjct: 666 KHFYFAVDNFNVFISK--------EVVRLFKTLYETIASSLVTPVTPNKLVTSD 711


>sp|Q9TSV4|TCF19_PIG Transcription factor 19 OS=Sus scrofa GN=TCF19
PE=3 SV=1
Length = 346

Score = 29.6 bits (65), Expect = 8.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1

Query: 135 RTSTRRHSASGSLQNNVALPRTH 67
R S HS+ G+L NNV LPR H
Sbjct: 70 RVSLEDHSSQGTLVNNVRLPRGH 92


>sp|Q7YR48|TCF19_PANTR Transcription factor 19 OS=Pan troglodytes
GN=TCF19 PE=3 SV=1
Length = 345

Score = 29.6 bits (65), Expect = 8.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1

Query: 135 RTSTRRHSASGSLQNNVALPRTH 67
R S HS+ G+L NNV LPR H
Sbjct: 70 RVSLEDHSSQGTLVNNVRLPRGH 92


>sp|Q99KJ5|TCF19_MOUSE Transcription factor 19-like protein OS=Mus
musculus GN=Tcf19 PE=2 SV=1
Length = 263

Score = 29.6 bits (65), Expect = 8.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1

Query: 135 RTSTRRHSASGSLQNNVALPRTH 67
R S HS+ G+L NNV LPR H
Sbjct: 70 RVSLEDHSSQGTLVNNVRLPRGH 92


>sp|Q9Y242|TCF19_HUMAN Transcription factor 19 OS=Homo sapiens
GN=TCF19 PE=1 SV=2
Length = 345

Score = 29.6 bits (65), Expect = 8.3
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -1

Query: 135 RTSTRRHSASGSLQNNVALPRTH 67
R S HS+ G+L NNV LPR H
Sbjct: 70 RVSLEDHSSQGTLVNNVRLPRGH 92


tr_hit_id Q654W0
Definition tr|Q654W0|Q654W0_ORYSJ Os06g0246000 protein OS=Oryza sativa subsp. japonica
Align length 82
Score (bit) 112.0
E-value 8.0e-24
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945100|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_D17, 5'
(501 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q654W0|Q654W0_ORYSJ Os06g0246000 protein OS=Oryza sativa subs... 112 8e-24
tr|O22414|O22414_ORYSA HvB12D homolog (Putative G-box binding pr... 112 8e-24
tr|A6MZE4|A6MZE4_ORYSI Putative uncharacterized protein OS=Oryza... 112 8e-24
tr|B6T1H8|B6T1H8_MAIZE B12D protein OS=Zea mays PE=4 SV=1 110 3e-23
tr|B6T144|B6T144_MAIZE B12D protein OS=Zea mays PE=4 SV=1 110 5e-23
tr|Q9XHD5|Q9XHD5_IPOBA B12D protein OS=Ipomoea batatas PE=4 SV=1 109 8e-23
tr|A7QBT2|A7QBT2_VITVI Chromosome chr1 scaffold_75, whole genome... 107 2e-22
tr|A7PD80|A7PD80_VITVI Chromosome chr17 scaffold_12, whole genom... 107 3e-22
tr|A9TL71|A9TL71_PHYPA Predicted protein OS=Physcomitrella paten... 105 9e-22
tr|B7FH72|B7FH72_MEDTR Putative uncharacterized protein OS=Medic... 103 5e-21
tr|Q1H8M8|Q1H8M8_BETVU B12D-like protein OS=Beta vulgaris GN=b12... 103 6e-21
tr|Q40019|Q40019_HORVU HvB12D protein (B12Dg1 protein) OS=Hordeu... 102 1e-20
tr|A9PCV0|A9PCV0_POPTR Putative uncharacterized protein OS=Popul... 101 2e-20
tr|Q42338|Q42338_ARATH HVB12D homologue (B12D-like protein) OS=A... 100 5e-20
tr|A9TC09|A9TC09_PHYPA Predicted protein OS=Physcomitrella paten... 99 1e-19
tr|Q6YU35|Q6YU35_ORYSJ Os07g0274700 protein OS=Oryza sativa subs... 97 3e-19
tr|A2YK70|A2YK70_ORYSI Putative uncharacterized protein OS=Oryza... 97 3e-19
tr|Q6Z4G5|Q6Z4G5_ORYSJ Os07g0604600 protein OS=Oryza sativa subs... 96 7e-19
tr|B8B8B0|B8B8B0_ORYSI Putative uncharacterized protein OS=Oryza... 96 7e-19
tr|A9NTZ5|A9NTZ5_PICSI Putative uncharacterized protein OS=Picea... 95 2e-18
tr|B6UH23|B6UH23_MAIZE B12D protein OS=Zea mays PE=4 SV=1 92 1e-17
tr|B6T2Z0|B6T2Z0_MAIZE B12D protein OS=Zea mays PE=4 SV=1 92 1e-17
tr|A9RS59|A9RS59_PHYPA Predicted protein OS=Physcomitrella paten... 92 1e-17
tr|Q6Z4G4|Q6Z4G4_ORYSJ Os07g0604700 protein OS=Oryza sativa subs... 92 2e-17
tr|A2YNI0|A2YNI0_ORYSI Putative uncharacterized protein OS=Oryza... 92 2e-17
tr|B6T0R2|B6T0R2_MAIZE B12D protein OS=Zea mays PE=4 SV=1 90 7e-17
tr|Q6YU38|Q6YU38_ORYSJ Os07g0274400 protein OS=Oryza sativa subs... 89 2e-16
tr|B7EQS5|B7EQS5_ORYSJ cDNA clone:J023114G05, full insert sequen... 89 2e-16
tr|A9T1P7|A9T1P7_PHYPA Predicted protein (Fragment) OS=Physcomit... 89 2e-16
tr|A3BA80|A3BA80_ORYSJ Putative uncharacterized protein OS=Oryza... 89 2e-16

>tr|Q654W0|Q654W0_ORYSJ Os06g0246000 protein OS=Oryza sativa subsp.
japonica GN=OJ1136_C11.3 PE=4 SV=1
Length = 89

Score = 112 bits (281), Expect = 8e-24
Identities = 49/82 (59%), Positives = 64/82 (78%)
Frame = +1

Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315
RW++PE++PLFAA+G AVG+CGF +FR+IT +P+VRVNK RAAG LEN EEG ++ EH
Sbjct: 5 RWVRPEVYPLFAAMGVAVGICGFQLFRNITGNPEVRVNKVGRAAGVLENHEEGRRYAEHG 64

Query: 316 FRRFLSDKHPEIFHTINKIFSE 381
R ++ DK PEI INK F+E
Sbjct: 65 LRNYVRDKTPEIMPAINKFFTE 86


>tr|O22414|O22414_ORYSA HvB12D homolog (Putative G-box binding
protein) OS=Oryza sativa PE=4 SV=1
Length = 89

Score = 112 bits (281), Expect = 8e-24
Identities = 49/82 (59%), Positives = 64/82 (78%)
Frame = +1

Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315
RW++PE++PLFAA+G AVG+CGF +FR+IT +P+VRVNK RAAG LEN EEG ++ EH
Sbjct: 5 RWVRPEVYPLFAAMGVAVGICGFQLFRNITGNPEVRVNKVGRAAGVLENHEEGRRYAEHG 64

Query: 316 FRRFLSDKHPEIFHTINKIFSE 381
R ++ DK PEI INK F+E
Sbjct: 65 LRNYVRDKTPEIMPAINKFFTE 86


>tr|A6MZE4|A6MZE4_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_22358 PE=4 SV=1
Length = 89

Score = 112 bits (281), Expect = 8e-24
Identities = 49/82 (59%), Positives = 64/82 (78%)
Frame = +1

Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315
RW++PE++PLFAA+G AVG+CGF +FR+IT +P+VRVNK RAAG LEN EEG ++ EH
Sbjct: 5 RWVRPEVYPLFAAMGVAVGICGFQLFRNITGNPEVRVNKVGRAAGVLENHEEGRRYAEHG 64

Query: 316 FRRFLSDKHPEIFHTINKIFSE 381
R ++ DK PEI INK F+E
Sbjct: 65 LRNYVRDKTPEIMPAINKFFTE 86


>tr|B6T1H8|B6T1H8_MAIZE B12D protein OS=Zea mays PE=4 SV=1
Length = 87

Score = 110 bits (276), Expect = 3e-23
Identities = 48/82 (58%), Positives = 63/82 (76%)
Frame = +1

Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315
RW++PE++PLFAA+G AVG+CGF +FR+IT +P+VRVNK RAAG LEN EEG ++ H
Sbjct: 4 RWVRPEVYPLFAAMGVAVGICGFQLFRNITGNPEVRVNKAGRAAGVLENHEEGRRYAMHG 63

Query: 316 FRRFLSDKHPEIFHTINKIFSE 381
R F+ DK PEI INK F++
Sbjct: 64 LRSFVHDKTPEIMPAINKFFTD 85


>tr|B6T144|B6T144_MAIZE B12D protein OS=Zea mays PE=4 SV=1
Length = 87

Score = 110 bits (274), Expect = 5e-23
Identities = 47/82 (57%), Positives = 62/82 (75%)
Frame = +1

Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315
RW++PE++PLFAA G AVG+CGF +FR+IT +P+VRVNK RAAG LEN EEG ++ H
Sbjct: 4 RWVRPEVYPLFAATGVAVGICGFQLFRNITGNPEVRVNKAGRAAGVLENHEEGRRYAMHG 63

Query: 316 FRRFLSDKHPEIFHTINKIFSE 381
R F+ DK PEI +NK F++
Sbjct: 64 LRSFVHDKTPEIMPAVNKFFTD 85


>tr|Q9XHD5|Q9XHD5_IPOBA B12D protein OS=Ipomoea batatas PE=4 SV=1
Length = 90

Score = 109 bits (272), Expect = 8e-23
Identities = 45/82 (54%), Positives = 67/82 (81%)
Frame = +1

Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315
RWI+PE++PLFAA+ AVG+CGF + R++T +P+VRVNK RAAG LEN+EEG+++ EH+
Sbjct: 5 RWIRPEVYPLFAAMSVAVGICGFQLIRNLTTNPEVRVNKEGRAAGVLENYEEGKKYAEHS 64

Query: 316 FRRFLSDKHPEIFHTINKIFSE 381
R+F+ +K PEI ++N+ FS+
Sbjct: 65 LRKFVRNKSPEIMPSLNRFFSD 86


>tr|A7QBT2|A7QBT2_VITVI Chromosome chr1 scaffold_75, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00035098001
PE=4 SV=1
Length = 93

Score = 107 bits (268), Expect = 2e-22
Identities = 46/82 (56%), Positives = 64/82 (78%)
Frame = +1

Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315
RW++PE++PLFAAVG AVG+CG + R+I +P+VRV K +R AG LENFEEGE++ EH
Sbjct: 8 RWLRPEVYPLFAAVGVAVGICGMQLVRNICTNPEVRVTKQNRTAGVLENFEEGERYAEHR 67

Query: 316 FRRFLSDKHPEIFHTINKIFSE 381
R+F+ +K P+I +INK FS+
Sbjct: 68 LRKFVRNKEPQIMPSINKFFSD 89


>tr|A7PD80|A7PD80_VITVI Chromosome chr17 scaffold_12, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00016171001
PE=4 SV=1
Length = 93

Score = 107 bits (267), Expect = 3e-22
Identities = 46/84 (54%), Positives = 66/84 (78%)
Frame = +1

Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315
RW++PE++PLFAA+G AVG+CGF + R+I +PDVRV+K +RAAG LENF EG+++ EH
Sbjct: 8 RWLRPEVYPLFAAMGVAVGICGFQLVRNICINPDVRVSKENRAAGVLENFTEGQKYSEHF 67

Query: 316 FRRFLSDKHPEIFHTINKIFSERE 387
R+++ +K PEI +IN FS+ E
Sbjct: 68 LRKYVRNKSPEIMPSINSFFSDPE 91


>tr|A9TL71|A9TL71_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_223334 PE=4 SV=1
Length = 93

Score = 105 bits (263), Expect = 9e-22
Identities = 45/81 (55%), Positives = 62/81 (76%)
Frame = +1

Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315
RWIKPEI+PLFAA+G A+G+CG++M R++ +PDVR+ K DRAAG LEN++EGE +K H
Sbjct: 10 RWIKPEIYPLFAAIGAALGICGYSMARNLAINPDVRITKEDRAAGVLENYKEGEAYKMHG 69

Query: 316 FRRFLSDKHPEIFHTINKIFS 378
R++L + P+I IN FS
Sbjct: 70 LRKYLQQQEPQIMPGINNYFS 90


>tr|B7FH72|B7FH72_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=4 SV=1
Length = 90

Score = 103 bits (257), Expect = 5e-21
Identities = 45/82 (54%), Positives = 62/82 (75%)
Frame = +1

Query: 136 RWIKPEIWPLFAAVGTAVGLCGFTMFRSITAHPDVRVNKGDRAAGYLENFEEGEQFKEHA 315
RWI+PE++PLFAAVG AVG+C F++ R+I +P+VRVNK RAAG LENF EGE++ EH
Sbjct: 5 RWIRPEVYPLFAAVGAAVGICAFSLVRNICINPEVRVNKQSRAAGVLENFAEGEKYTEHL 64

Query: 316 FRRFLSDKHPEIFHTINKIFSE 381
R+F ++ PEI +N F++
Sbjct: 65 LRKFSRNRSPEIMPGLNSFFTD 86