DK945205 |
Clone id |
YMU02A01NGRL0008_J02 |
Library |
YMU02 |
Length |
494 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_J02. 5' end sequence. |
Accession |
DK945205 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
ACATTTTGTGAGACCGTTGATCCCGCCTAAATATTGAGGCTGTCCAAGGGCACTCTGCTG CGCTCACCAGTGGTACGAGCAGGTGTCCGTGTCGCATAGCAGGTAGTCATGGATGGAGGA ATGGCTCAACCTCCGCCCGAGCCAGTTTCCTATTTGTGTGGAGACTGCGGGGCTGATAAT GCATTGAAGCCCGGGGATGTGATACAGTGTCGAGAATGTGGTTACCGTATTCTTTACAAG AAACGGACTCGGCGCATTGTTCAATATGAGGCTCGGTAGCATGCGGCTCTTGGGACACAT GCAATGTGATTGGGAGAGGCATTTGTTGGCACTACATGTGAATATGCTGTGTACAAAGAT TTGCCTCCTTGGGAAGAATTGCTATTCAGATGGGTCTGTTTCAAACTTTTAGGCAGGGAG GTCTTGCATGTACCTATAGCCTTATCAGTCCCATGAAGTTAGTCTAGAANAAAAAAAAAA AAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P48011 |
Definition |
sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe |
Align length |
56 |
Score (bit) |
73.9 |
E-value |
3.0e-13 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945205|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0008_J02, 5' (467 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and II... 74 3e-13 sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and II... 70 3e-12 sp|P53803|RPAB4_HUMAN DNA-directed RNA polymerases I, II, and II... 70 3e-12 sp|Q3ZBC0|RPAB4_BOVIN DNA-directed RNA polymerases I, II, and II... 70 3e-12 sp|Q54R66|RPAB4_DICDI DNA-directed RNA polymerases I, II, and II... 64 4e-10 sp|P40422|RPAB4_YEAST DNA-directed RNA polymerases I, II, and II... 56 7e-08 sp|Q3IMF0|RPOP_NATPD DNA-directed RNA polymerase subunit P OS=Na... 35 0.12 sp|Q9HSG9|RPOP_HALSA DNA-directed RNA polymerase subunit P OS=Ha... 33 0.47 sp|Q8ZTH0|RL40_PYRAE 50S ribosomal protein L40e OS=Pyrobaculum a... 33 0.80 sp|Q4JAE8|RPOP_SULAC DNA-directed RNA polymerase subunit P OS=Su... 32 1.4 sp|Q18KN3|RPOP_HALWD DNA-directed RNA polymerase subunit P OS=Ha... 32 1.4 sp|Q7V9J2|DNLJ_PROMA DNA ligase OS=Prochlorococcus marinus GN=li... 32 1.4 sp|Q5V1M2|RPOP_HALMA DNA-directed RNA polymerase subunit P OS=Ha... 32 1.8 sp|Q5XI83|CP062_RAT UPF0505 protein C16orf62 homolog OS=Rattus n... 32 1.8 sp|Q8BWQ6|CP062_MOUSE UPF0505 protein C16orf62 homolog OS=Mus mu... 32 1.8 sp|Q8TYC4|RPOP_METKA DNA-directed RNA polymerase subunit P OS=Me... 31 2.3 sp|P54362|AP3D_DROME AP-3 complex subunit delta OS=Drosophila me... 31 3.1 sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabi... 30 4.0 sp|O30180|RPOP_ARCFU DNA-directed RNA polymerase subunit P OS=Ar... 30 4.0 sp|P62007|RL40_PYRHO 50S ribosomal protein L40e OS=Pyrococcus ho... 30 5.2 sp|P62006|RL40_PYRAB 50S ribosomal protein L40e OS=Pyrococcus ab... 30 5.2 sp|Q975R9|RPOP_SULTO DNA-directed RNA polymerase subunit P OS=Su... 30 6.8 sp|Q8U0V6|RL40_PYRFU 50S ribosomal protein L40e OS=Pyrococcus fu... 30 6.8 sp|Q9HNJ5|RL40_HALSA 50S ribosomal protein L40e OS=Halobacterium... 30 6.8 sp|Q704U0|XPO7A_XENLA Exportin-7-A OS=Xenopus laevis GN=xpo7-A P... 29 8.9 sp|Q6S6U0|ICP4_EHV1V Trans-acting transcriptional protein ICP4 O... 29 8.9 sp|P17473|ICP4_EHV1K Trans-acting transcriptional protein ICP4 O... 29 8.9 sp|P28925|ICP4_EHV1B Trans-acting transcriptional protein ICP4 O... 29 8.9
>sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe GN=rpc10 PE=2 SV=2 Length = 63
Score = 73.9 bits (180), Expect = 3e-13 Identities = 32/56 (57%), Positives = 43/56 (76%), Gaps = 2/56 (3%) Frame = +1
Query: 115 GGMAQPPPEPVS--YLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276 GG A PP P + YLC DCGA N ++ +VI+CRECG+R++YK RT+R+VQ+EAR Sbjct: 8 GGTAFNPPRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63
>sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Mus musculus GN=Polr2k PE=2 SV=2 Length = 58
Score = 70.5 bits (171), Expect = 3e-12 Identities = 29/51 (56%), Positives = 41/51 (80%), Gaps = 1/51 (1%) Frame = +1
Query: 127 QPPPE-PVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276 QPP + P+ Y+CG+C +N +K D I+CRECGYRI+YKKRT+R+V ++AR Sbjct: 8 QPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>sp|P53803|RPAB4_HUMAN DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Homo sapiens GN=POLR2K PE=2 SV=1 Length = 58
Score = 70.5 bits (171), Expect = 3e-12 Identities = 29/51 (56%), Positives = 41/51 (80%), Gaps = 1/51 (1%) Frame = +1
Query: 127 QPPPE-PVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276 QPP + P+ Y+CG+C +N +K D I+CRECGYRI+YKKRT+R+V ++AR Sbjct: 8 QPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>sp|Q3ZBC0|RPAB4_BOVIN DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Bos taurus GN=POLR2K PE=3 SV=1 Length = 58
Score = 70.5 bits (171), Expect = 3e-12 Identities = 29/51 (56%), Positives = 41/51 (80%), Gaps = 1/51 (1%) Frame = +1
Query: 127 QPPPE-PVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276 QPP + P+ Y+CG+C +N +K D I+CRECGYRI+YKKRT+R+V ++AR Sbjct: 8 QPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>sp|Q54R66|RPAB4_DICDI DNA-directed RNA polymerases I, II, and III subunit rpabc4 OS=Dictyostelium discoideum GN=polr2k PE=3 SV=1 Length = 46
Score = 63.5 bits (153), Expect = 4e-10 Identities = 22/45 (48%), Positives = 38/45 (84%) Frame = +1
Query: 142 PVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276 P Y+CG+CGA++ +KP + ++C++C +RI+YKKRT +++Q+EAR Sbjct: 2 PCLYICGECGAEHEIKPKEPVKCKDCTHRIMYKKRTDKMIQFEAR 46
>sp|P40422|RPAB4_YEAST DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Saccharomyces cerevisiae GN=RPC10 PE=1 SV=1 Length = 70
Score = 56.2 bits (134), Expect = 7e-08 Identities = 22/53 (41%), Positives = 36/53 (67%) Frame = +1
Query: 118 GMAQPPPEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276 G +Q + Y+C +C + +L D ++C++CG+RIL K RT+R+VQ+EAR Sbjct: 18 GTSQARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR 70
>sp|Q3IMF0|RPOP_NATPD DNA-directed RNA polymerase subunit P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpoP PE=3 SV=1 Length = 44
Score = 35.4 bits (80), Expect = 0.12 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +1
Query: 145 VSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYE 270 +SY C C D L ++C CG+R+L K+R+R I + E Sbjct: 1 MSYKCSRCKRDVELDEYGGVRCPYCGHRVLLKERSRDIKEVE 42
>sp|Q9HSG9|RPOP_HALSA DNA-directed RNA polymerase subunit P OS=Halobacterium salinarium GN=rpoP PE=3 SV=1 Length = 44
Score = 33.5 bits (75), Expect = 0.47 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +1
Query: 145 VSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRI 258 +SY C C D L ++C CG+R+L K+R+R + Sbjct: 1 MSYKCSRCKRDVELDEYGGVRCPYCGHRVLLKERSRDV 38
>sp|Q8ZTH0|RL40_PYRAE 50S ribosomal protein L40e OS=Pyrobaculum aerophilum GN=rpl40e PE=3 SV=1 Length = 53
Score = 32.7 bits (73), Expect = 0.80 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +1
Query: 154 LCGDCGADNALKPGDVIQCRECGYRILYKKRTRR 255 +C +CGA N P D ++CR C R L KR R+ Sbjct: 22 ICRECGAKN---PPDAVKCRRCRSRNLRPKRFRK 52
>sp|Q4JAE8|RPOP_SULAC DNA-directed RNA polymerase subunit P OS=Sulfolobus acidocaldarius GN=rpoP PE=3 SV=1 Length = 48
Score = 32.0 bits (71), Expect = 1.4 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%) Frame = +1
Query: 151 YLCGDCGA---DNALKPGDVIQCRECGYRILY--KKRTRRIVQ 264 Y CG C D+ LK ++C CGYRI+Y +K T +IV+ Sbjct: 4 YRCGKCWKELDDDQLKTLPGVRCPYCGYRIIYMVRKPTVKIVK 46
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9U0K9 |
Definition |
tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
56 |
Score (bit) |
114.0 |
E-value |
2.0e-24 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945205|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0008_J02, 5' (467 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella paten... 114 2e-24 tr|A9NP23|A9NP23_PICSI Putative uncharacterized protein OS=Picea... 102 7e-21 tr|B8A9M5|B8A9M5_ORYSI Putative uncharacterized protein OS=Oryza... 101 2e-20 tr|B6SPH6|B6SPH6_MAIZE DNA-directed RNA polymerases I, II, and I... 101 2e-20 tr|A9NKF0|A9NKF0_PICSI Putative uncharacterized protein OS=Picea... 101 2e-20 tr|B6T0X3|B6T0X3_MAIZE DNA-directed RNA polymerases I, II, and I... 97 3e-19 tr|Q9FLM8|Q9FLM8_ARATH Similarity to metallothionein-I gene tran... 96 7e-19 tr|A7R4J8|A7R4J8_VITVI Chromosome undetermined scaffold_712, who... 91 2e-17 tr|B8AY54|B8AY54_ORYSI Putative uncharacterized protein OS=Oryza... 89 1e-16 tr|B6TU31|B6TU31_MAIZE DNA-directed RNA polymerases I, II, and I... 87 3e-16 tr|A8ITN4|A8ITN4_CHLRE Subunit f DNA-directed RNA polymerase OS=... 80 7e-14 tr|Q01EI8|Q01EI8_OSTTA Rpc10 RPC10 subunit of RNA polymerases I,... 77 6e-13 tr|A4RSR4|A4RSR4_OSTLU RPC10 subunit of RNA polymerases I, II, a... 77 6e-13 tr|Q6GQI6|Q6GQI6_XENLA Polr2ka protein (Polr2kb protein) OS=Xeno... 74 4e-12 tr|Q28CR4|Q28CR4_XENTR Polymerase (RNA) II (DNA directed) polype... 74 4e-12 tr|B6K0B9|B6K0B9_SCHJP DNA-directed RNA polymerase I OS=Schizosa... 73 6e-12 tr|Q4SJ44|Q4SJ44_TETNG Chromosome 21 SCAF14577, whole genome sho... 72 1e-11 tr|B6KNP5|B6KNP5_TOXGO Transcription activator, putative OS=Toxo... 72 2e-11 tr|B5FYP8|B5FYP8_TAEGU Putative DNA directed RNA polymerase II p... 70 4e-11 tr|Q9D2S5|Q9D2S5_MOUSE Putative uncharacterized protein OS=Mus m... 70 4e-11 tr|Q8BFX0|Q8BFX0_MOUSE Putative uncharacterized protein OS=Mus m... 70 4e-11 tr|Q545V5|Q545V5_MOUSE Putative uncharacterized protein OS=Mus m... 70 4e-11 tr|Q9U3I0|Q9U3I0_CAEEL Protein F23B2.13, partially confirmed by ... 70 4e-11 tr|Q6IBD4|Q6IBD4_HUMAN POLR2K protein OS=Homo sapiens GN=POLR2K ... 70 4e-11 tr|B0CYT9|B0CYT9_LACBS Predicted protein OS=Laccaria bicolor (st... 70 4e-11 tr|A3FPP8|A3FPP8_CRYPV Transcription activator, putative (Fragme... 70 7e-11 tr|B8N130|B8N130_ASPFL Metallothionein-I gene transcription acti... 70 7e-11 tr|A8Y0I0|A8Y0I0_CAEBR CBR-RPB-12 protein OS=Caenorhabditis brig... 69 9e-11 tr|B6QQI0|B6QQI0_PENMA Metallothionein-I gene transcription acti... 69 1e-10 tr|A7E2K9|A7E2K9_DANRE Zgc:171795 protein OS=Danio rerio GN=zgc:... 69 2e-10
>tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_63544 PE=4 SV=1 Length = 56
Score = 114 bits (285), Expect = 2e-24 Identities = 50/56 (89%), Positives = 53/56 (94%) Frame = +1
Query: 109 MDGGMAQPPPEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276 MDG M+ PPPEPV+YLCGDCGADN LKPGDVIQCRECGYRILYKKRTRRIVQ+EAR Sbjct: 1 MDGSMSAPPPEPVTYLCGDCGADNTLKPGDVIQCRECGYRILYKKRTRRIVQFEAR 56
>tr|A9NP23|A9NP23_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 53
Score = 102 bits (255), Expect = 7e-21 Identities = 48/56 (85%), Positives = 51/56 (91%) Frame = +1
Query: 109 MDGGMAQPPPEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276 MDG A PEPVSY+CGDCGA+N+LKPGDVIQCRECGYRILYKKRTRRIVQYEAR Sbjct: 1 MDGHAA---PEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53
>tr|B8A9M5|B8A9M5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_02267 PE=4 SV=1 Length = 52
Score = 101 bits (252), Expect = 2e-20 Identities = 45/47 (95%), Positives = 46/47 (97%) Frame = +1
Query: 136 PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276 PEPVSYLCGDCGA+N LKPGDVIQCRECGYRILYKKRTRRIVQYEAR Sbjct: 6 PEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>tr|B6SPH6|B6SPH6_MAIZE DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide OS=Zea mays PE=4 SV=1 Length = 52
Score = 101 bits (252), Expect = 2e-20 Identities = 45/47 (95%), Positives = 46/47 (97%) Frame = +1
Query: 136 PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276 PEPVSYLCGDCGA+N LKPGDVIQCRECGYRILYKKRTRRIVQYEAR Sbjct: 6 PEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>tr|A9NKF0|A9NKF0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 53
Score = 101 bits (251), Expect = 2e-20 Identities = 44/47 (93%), Positives = 47/47 (100%) Frame = +1
Query: 136 PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276 PEPVSY+CGDCGA+N+LKPGDVIQCRECGYRILYKKRTRRIVQYEAR Sbjct: 7 PEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53
>tr|B6T0X3|B6T0X3_MAIZE DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide OS=Zea mays PE=4 SV=1 Length = 52
Score = 97.4 bits (241), Expect = 3e-19 Identities = 44/47 (93%), Positives = 45/47 (95%) Frame = +1
Query: 136 PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276 PEPVSYLCGDCGA+N LKPGDVIQ RECGYRILYKKRTRRIVQYEAR Sbjct: 6 PEPVSYLCGDCGAENTLKPGDVIQWRECGYRILYKKRTRRIVQYEAR 52
>tr|Q9FLM8|Q9FLM8_ARATH Similarity to metallothionein-I gene transcription activator (DNA directed RNA polymerase II polypeptide K) (Putative uncharacterized protein At5g41010) OS=Arabidopsis thaliana GN=At5g41010 PE=2 SV=1 Length = 51
Score = 96.3 bits (238), Expect = 7e-19 Identities = 41/49 (83%), Positives = 45/49 (91%) Frame = +1
Query: 130 PPPEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276 P PEPV+Y+CGDCG +N LK GDVIQCRECGYRILYKKRTRR+VQYEAR Sbjct: 3 PAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
>tr|A7R4J8|A7R4J8_VITVI Chromosome undetermined scaffold_712, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00004487001 PE=4 SV=1 Length = 74
Score = 91.3 bits (225), Expect = 2e-17 Identities = 39/46 (84%), Positives = 41/46 (89%) Frame = +1
Query: 130 PPPEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQY 267 P PEPVSY+CGDCG +N LKPGDVIQCRECGYRILYKKRTRR QY Sbjct: 3 PQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRSKQY 48
>tr|B8AY54|B8AY54_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_18488 PE=4 SV=1 Length = 87
Score = 89.0 bits (219), Expect = 1e-16 Identities = 39/49 (79%), Positives = 42/49 (85%) Frame = +1
Query: 136 PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR*H 282 PEPVSYLCGDCGA+N LKPGDVIQCRECGYRILYKKRTRR + + H Sbjct: 6 PEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRSCRSQLNGH 54
>tr|B6TU31|B6TU31_MAIZE DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide OS=Zea mays PE=4 SV=1 Length = 53
Score = 87.4 bits (215), Expect = 3e-16 Identities = 39/51 (76%), Positives = 46/51 (90%), Gaps = 2/51 (3%) Frame = +1
Query: 130 PP--PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276 PP PEPV+Y+CGDCGA+N +K DV+QCRECG+RILYKKRTRRIVQ+EAR Sbjct: 3 PPQQPEPVTYVCGDCGAENTVKLVDVVQCRECGHRILYKKRTRRIVQFEAR 53
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