DK945205
Clone id YMU02A01NGRL0008_J02
Library
Length 494
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_J02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
ACATTTTGTGAGACCGTTGATCCCGCCTAAATATTGAGGCTGTCCAAGGGCACTCTGCTG
CGCTCACCAGTGGTACGAGCAGGTGTCCGTGTCGCATAGCAGGTAGTCATGGATGGAGGA
ATGGCTCAACCTCCGCCCGAGCCAGTTTCCTATTTGTGTGGAGACTGCGGGGCTGATAAT
GCATTGAAGCCCGGGGATGTGATACAGTGTCGAGAATGTGGTTACCGTATTCTTTACAAG
AAACGGACTCGGCGCATTGTTCAATATGAGGCTCGGTAGCATGCGGCTCTTGGGACACAT
GCAATGTGATTGGGAGAGGCATTTGTTGGCACTACATGTGAATATGCTGTGTACAAAGAT
TTGCCTCCTTGGGAAGAATTGCTATTCAGATGGGTCTGTTTCAAACTTTTAGGCAGGGAG
GTCTTGCATGTACCTATAGCCTTATCAGTCCCATGAAGTTAGTCTAGAANAAAAAAAAAA
AAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P48011
Definition sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and III subunit RPABC4 OS=Schizosaccharomyces pombe
Align length 56
Score (bit) 73.9
E-value 3.0e-13
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945205|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_J02, 5'
(467 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and II... 74 3e-13
sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and II... 70 3e-12
sp|P53803|RPAB4_HUMAN DNA-directed RNA polymerases I, II, and II... 70 3e-12
sp|Q3ZBC0|RPAB4_BOVIN DNA-directed RNA polymerases I, II, and II... 70 3e-12
sp|Q54R66|RPAB4_DICDI DNA-directed RNA polymerases I, II, and II... 64 4e-10
sp|P40422|RPAB4_YEAST DNA-directed RNA polymerases I, II, and II... 56 7e-08
sp|Q3IMF0|RPOP_NATPD DNA-directed RNA polymerase subunit P OS=Na... 35 0.12
sp|Q9HSG9|RPOP_HALSA DNA-directed RNA polymerase subunit P OS=Ha... 33 0.47
sp|Q8ZTH0|RL40_PYRAE 50S ribosomal protein L40e OS=Pyrobaculum a... 33 0.80
sp|Q4JAE8|RPOP_SULAC DNA-directed RNA polymerase subunit P OS=Su... 32 1.4
sp|Q18KN3|RPOP_HALWD DNA-directed RNA polymerase subunit P OS=Ha... 32 1.4
sp|Q7V9J2|DNLJ_PROMA DNA ligase OS=Prochlorococcus marinus GN=li... 32 1.4
sp|Q5V1M2|RPOP_HALMA DNA-directed RNA polymerase subunit P OS=Ha... 32 1.8
sp|Q5XI83|CP062_RAT UPF0505 protein C16orf62 homolog OS=Rattus n... 32 1.8
sp|Q8BWQ6|CP062_MOUSE UPF0505 protein C16orf62 homolog OS=Mus mu... 32 1.8
sp|Q8TYC4|RPOP_METKA DNA-directed RNA polymerase subunit P OS=Me... 31 2.3
sp|P54362|AP3D_DROME AP-3 complex subunit delta OS=Drosophila me... 31 3.1
sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabi... 30 4.0
sp|O30180|RPOP_ARCFU DNA-directed RNA polymerase subunit P OS=Ar... 30 4.0
sp|P62007|RL40_PYRHO 50S ribosomal protein L40e OS=Pyrococcus ho... 30 5.2
sp|P62006|RL40_PYRAB 50S ribosomal protein L40e OS=Pyrococcus ab... 30 5.2
sp|Q975R9|RPOP_SULTO DNA-directed RNA polymerase subunit P OS=Su... 30 6.8
sp|Q8U0V6|RL40_PYRFU 50S ribosomal protein L40e OS=Pyrococcus fu... 30 6.8
sp|Q9HNJ5|RL40_HALSA 50S ribosomal protein L40e OS=Halobacterium... 30 6.8
sp|Q704U0|XPO7A_XENLA Exportin-7-A OS=Xenopus laevis GN=xpo7-A P... 29 8.9
sp|Q6S6U0|ICP4_EHV1V Trans-acting transcriptional protein ICP4 O... 29 8.9
sp|P17473|ICP4_EHV1K Trans-acting transcriptional protein ICP4 O... 29 8.9
sp|P28925|ICP4_EHV1B Trans-acting transcriptional protein ICP4 O... 29 8.9

>sp|P48011|RPAB4_SCHPO DNA-directed RNA polymerases I, II, and III
subunit RPABC4 OS=Schizosaccharomyces pombe GN=rpc10
PE=2 SV=2
Length = 63

Score = 73.9 bits (180), Expect = 3e-13
Identities = 32/56 (57%), Positives = 43/56 (76%), Gaps = 2/56 (3%)
Frame = +1

Query: 115 GGMAQPPPEPVS--YLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276
GG A PP P + YLC DCGA N ++ +VI+CRECG+R++YK RT+R+VQ+EAR
Sbjct: 8 GGTAFNPPRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63


>sp|Q63871|RPAB4_MOUSE DNA-directed RNA polymerases I, II, and III
subunit RPABC4 OS=Mus musculus GN=Polr2k PE=2 SV=2
Length = 58

Score = 70.5 bits (171), Expect = 3e-12
Identities = 29/51 (56%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Frame = +1

Query: 127 QPPPE-PVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276
QPP + P+ Y+CG+C +N +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 8 QPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58


>sp|P53803|RPAB4_HUMAN DNA-directed RNA polymerases I, II, and III
subunit RPABC4 OS=Homo sapiens GN=POLR2K PE=2 SV=1
Length = 58

Score = 70.5 bits (171), Expect = 3e-12
Identities = 29/51 (56%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Frame = +1

Query: 127 QPPPE-PVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276
QPP + P+ Y+CG+C +N +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 8 QPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58


>sp|Q3ZBC0|RPAB4_BOVIN DNA-directed RNA polymerases I, II, and III
subunit RPABC4 OS=Bos taurus GN=POLR2K PE=3 SV=1
Length = 58

Score = 70.5 bits (171), Expect = 3e-12
Identities = 29/51 (56%), Positives = 41/51 (80%), Gaps = 1/51 (1%)
Frame = +1

Query: 127 QPPPE-PVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276
QPP + P+ Y+CG+C +N +K D I+CRECGYRI+YKKRT+R+V ++AR
Sbjct: 8 QPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58


>sp|Q54R66|RPAB4_DICDI DNA-directed RNA polymerases I, II, and III
subunit rpabc4 OS=Dictyostelium discoideum GN=polr2k
PE=3 SV=1
Length = 46

Score = 63.5 bits (153), Expect = 4e-10
Identities = 22/45 (48%), Positives = 38/45 (84%)
Frame = +1

Query: 142 PVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276
P Y+CG+CGA++ +KP + ++C++C +RI+YKKRT +++Q+EAR
Sbjct: 2 PCLYICGECGAEHEIKPKEPVKCKDCTHRIMYKKRTDKMIQFEAR 46


>sp|P40422|RPAB4_YEAST DNA-directed RNA polymerases I, II, and III
subunit RPABC4 OS=Saccharomyces cerevisiae GN=RPC10 PE=1
SV=1
Length = 70

Score = 56.2 bits (134), Expect = 7e-08
Identities = 22/53 (41%), Positives = 36/53 (67%)
Frame = +1

Query: 118 GMAQPPPEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276
G +Q + Y+C +C + +L D ++C++CG+RIL K RT+R+VQ+EAR
Sbjct: 18 GTSQARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKARTKRLVQFEAR 70


>sp|Q3IMF0|RPOP_NATPD DNA-directed RNA polymerase subunit P
OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678)
GN=rpoP PE=3 SV=1
Length = 44

Score = 35.4 bits (80), Expect = 0.12
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1

Query: 145 VSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYE 270
+SY C C D L ++C CG+R+L K+R+R I + E
Sbjct: 1 MSYKCSRCKRDVELDEYGGVRCPYCGHRVLLKERSRDIKEVE 42


>sp|Q9HSG9|RPOP_HALSA DNA-directed RNA polymerase subunit P
OS=Halobacterium salinarium GN=rpoP PE=3 SV=1
Length = 44

Score = 33.5 bits (75), Expect = 0.47
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1

Query: 145 VSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRI 258
+SY C C D L ++C CG+R+L K+R+R +
Sbjct: 1 MSYKCSRCKRDVELDEYGGVRCPYCGHRVLLKERSRDV 38


>sp|Q8ZTH0|RL40_PYRAE 50S ribosomal protein L40e OS=Pyrobaculum
aerophilum GN=rpl40e PE=3 SV=1
Length = 53

Score = 32.7 bits (73), Expect = 0.80
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1

Query: 154 LCGDCGADNALKPGDVIQCRECGYRILYKKRTRR 255
+C +CGA N P D ++CR C R L KR R+
Sbjct: 22 ICRECGAKN---PPDAVKCRRCRSRNLRPKRFRK 52


>sp|Q4JAE8|RPOP_SULAC DNA-directed RNA polymerase subunit P
OS=Sulfolobus acidocaldarius GN=rpoP PE=3 SV=1
Length = 48

Score = 32.0 bits (71), Expect = 1.4
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = +1

Query: 151 YLCGDCGA---DNALKPGDVIQCRECGYRILY--KKRTRRIVQ 264
Y CG C D+ LK ++C CGYRI+Y +K T +IV+
Sbjct: 4 YRCGKCWKELDDDQLKTLPGVRCPYCGYRIIYMVRKPTVKIVK 46


tr_hit_id A9U0K9
Definition tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 56
Score (bit) 114.0
E-value 2.0e-24
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945205|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_J02, 5'
(467 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella paten... 114 2e-24
tr|A9NP23|A9NP23_PICSI Putative uncharacterized protein OS=Picea... 102 7e-21
tr|B8A9M5|B8A9M5_ORYSI Putative uncharacterized protein OS=Oryza... 101 2e-20
tr|B6SPH6|B6SPH6_MAIZE DNA-directed RNA polymerases I, II, and I... 101 2e-20
tr|A9NKF0|A9NKF0_PICSI Putative uncharacterized protein OS=Picea... 101 2e-20
tr|B6T0X3|B6T0X3_MAIZE DNA-directed RNA polymerases I, II, and I... 97 3e-19
tr|Q9FLM8|Q9FLM8_ARATH Similarity to metallothionein-I gene tran... 96 7e-19
tr|A7R4J8|A7R4J8_VITVI Chromosome undetermined scaffold_712, who... 91 2e-17
tr|B8AY54|B8AY54_ORYSI Putative uncharacterized protein OS=Oryza... 89 1e-16
tr|B6TU31|B6TU31_MAIZE DNA-directed RNA polymerases I, II, and I... 87 3e-16
tr|A8ITN4|A8ITN4_CHLRE Subunit f DNA-directed RNA polymerase OS=... 80 7e-14
tr|Q01EI8|Q01EI8_OSTTA Rpc10 RPC10 subunit of RNA polymerases I,... 77 6e-13
tr|A4RSR4|A4RSR4_OSTLU RPC10 subunit of RNA polymerases I, II, a... 77 6e-13
tr|Q6GQI6|Q6GQI6_XENLA Polr2ka protein (Polr2kb protein) OS=Xeno... 74 4e-12
tr|Q28CR4|Q28CR4_XENTR Polymerase (RNA) II (DNA directed) polype... 74 4e-12
tr|B6K0B9|B6K0B9_SCHJP DNA-directed RNA polymerase I OS=Schizosa... 73 6e-12
tr|Q4SJ44|Q4SJ44_TETNG Chromosome 21 SCAF14577, whole genome sho... 72 1e-11
tr|B6KNP5|B6KNP5_TOXGO Transcription activator, putative OS=Toxo... 72 2e-11
tr|B5FYP8|B5FYP8_TAEGU Putative DNA directed RNA polymerase II p... 70 4e-11
tr|Q9D2S5|Q9D2S5_MOUSE Putative uncharacterized protein OS=Mus m... 70 4e-11
tr|Q8BFX0|Q8BFX0_MOUSE Putative uncharacterized protein OS=Mus m... 70 4e-11
tr|Q545V5|Q545V5_MOUSE Putative uncharacterized protein OS=Mus m... 70 4e-11
tr|Q9U3I0|Q9U3I0_CAEEL Protein F23B2.13, partially confirmed by ... 70 4e-11
tr|Q6IBD4|Q6IBD4_HUMAN POLR2K protein OS=Homo sapiens GN=POLR2K ... 70 4e-11
tr|B0CYT9|B0CYT9_LACBS Predicted protein OS=Laccaria bicolor (st... 70 4e-11
tr|A3FPP8|A3FPP8_CRYPV Transcription activator, putative (Fragme... 70 7e-11
tr|B8N130|B8N130_ASPFL Metallothionein-I gene transcription acti... 70 7e-11
tr|A8Y0I0|A8Y0I0_CAEBR CBR-RPB-12 protein OS=Caenorhabditis brig... 69 9e-11
tr|B6QQI0|B6QQI0_PENMA Metallothionein-I gene transcription acti... 69 1e-10
tr|A7E2K9|A7E2K9_DANRE Zgc:171795 protein OS=Danio rerio GN=zgc:... 69 2e-10

>tr|A9U0K9|A9U0K9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_63544 PE=4 SV=1
Length = 56

Score = 114 bits (285), Expect = 2e-24
Identities = 50/56 (89%), Positives = 53/56 (94%)
Frame = +1

Query: 109 MDGGMAQPPPEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276
MDG M+ PPPEPV+YLCGDCGADN LKPGDVIQCRECGYRILYKKRTRRIVQ+EAR
Sbjct: 1 MDGSMSAPPPEPVTYLCGDCGADNTLKPGDVIQCRECGYRILYKKRTRRIVQFEAR 56


>tr|A9NP23|A9NP23_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 53

Score = 102 bits (255), Expect = 7e-21
Identities = 48/56 (85%), Positives = 51/56 (91%)
Frame = +1

Query: 109 MDGGMAQPPPEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276
MDG A PEPVSY+CGDCGA+N+LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 1 MDGHAA---PEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53


>tr|B8A9M5|B8A9M5_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_02267 PE=4 SV=1
Length = 52

Score = 101 bits (252), Expect = 2e-20
Identities = 45/47 (95%), Positives = 46/47 (97%)
Frame = +1

Query: 136 PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276
PEPVSYLCGDCGA+N LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 6 PEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52


>tr|B6SPH6|B6SPH6_MAIZE DNA-directed RNA polymerases I, II, and III
7.3 kDa polypeptide OS=Zea mays PE=4 SV=1
Length = 52

Score = 101 bits (252), Expect = 2e-20
Identities = 45/47 (95%), Positives = 46/47 (97%)
Frame = +1

Query: 136 PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276
PEPVSYLCGDCGA+N LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 6 PEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52


>tr|A9NKF0|A9NKF0_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 53

Score = 101 bits (251), Expect = 2e-20
Identities = 44/47 (93%), Positives = 47/47 (100%)
Frame = +1

Query: 136 PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276
PEPVSY+CGDCGA+N+LKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Sbjct: 7 PEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53


>tr|B6T0X3|B6T0X3_MAIZE DNA-directed RNA polymerases I, II, and III
7.3 kDa polypeptide OS=Zea mays PE=4 SV=1
Length = 52

Score = 97.4 bits (241), Expect = 3e-19
Identities = 44/47 (93%), Positives = 45/47 (95%)
Frame = +1

Query: 136 PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276
PEPVSYLCGDCGA+N LKPGDVIQ RECGYRILYKKRTRRIVQYEAR
Sbjct: 6 PEPVSYLCGDCGAENTLKPGDVIQWRECGYRILYKKRTRRIVQYEAR 52


>tr|Q9FLM8|Q9FLM8_ARATH Similarity to metallothionein-I gene
transcription activator (DNA directed RNA polymerase II
polypeptide K) (Putative uncharacterized protein
At5g41010) OS=Arabidopsis thaliana GN=At5g41010 PE=2
SV=1
Length = 51

Score = 96.3 bits (238), Expect = 7e-19
Identities = 41/49 (83%), Positives = 45/49 (91%)
Frame = +1

Query: 130 PPPEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276
P PEPV+Y+CGDCG +N LK GDVIQCRECGYRILYKKRTRR+VQYEAR
Sbjct: 3 PAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51


>tr|A7R4J8|A7R4J8_VITVI Chromosome undetermined scaffold_712, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00004487001 PE=4 SV=1
Length = 74

Score = 91.3 bits (225), Expect = 2e-17
Identities = 39/46 (84%), Positives = 41/46 (89%)
Frame = +1

Query: 130 PPPEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQY 267
P PEPVSY+CGDCG +N LKPGDVIQCRECGYRILYKKRTRR QY
Sbjct: 3 PQPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRSKQY 48


>tr|B8AY54|B8AY54_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_18488 PE=4 SV=1
Length = 87

Score = 89.0 bits (219), Expect = 1e-16
Identities = 39/49 (79%), Positives = 42/49 (85%)
Frame = +1

Query: 136 PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR*H 282
PEPVSYLCGDCGA+N LKPGDVIQCRECGYRILYKKRTRR + + H
Sbjct: 6 PEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRSCRSQLNGH 54


>tr|B6TU31|B6TU31_MAIZE DNA-directed RNA polymerases I, II, and III
7.3 kDa polypeptide OS=Zea mays PE=4 SV=1
Length = 53

Score = 87.4 bits (215), Expect = 3e-16
Identities = 39/51 (76%), Positives = 46/51 (90%), Gaps = 2/51 (3%)
Frame = +1

Query: 130 PP--PEPVSYLCGDCGADNALKPGDVIQCRECGYRILYKKRTRRIVQYEAR 276
PP PEPV+Y+CGDCGA+N +K DV+QCRECG+RILYKKRTRRIVQ+EAR
Sbjct: 3 PPQQPEPVTYVCGDCGAENTVKLVDVVQCRECGHRILYKKRTRRIVQFEAR 53