DK945299
Clone id YMU02A01NGRL0008_N23
Library
Length 566
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0008_N23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GCGTACAAGCTCAGAGAGTGGGGAGAACTCGGACCCGGAAGACCATGTACTGGTCCTTGA
TGTAGAGAAGGATAAAGAGGGTGGAGAGGAGATTGAGCCCTGCTACCAAGTGTTCAGTAT
GCGCTCACACAAGCGCTCGGTGAGTAGCATTTCATCGGTATGAGGTTGGCATGTGTGTCA
ATGCAGGTAGTCAAGAATATGGTGCTATGCCATACTGTGTGAAGAGTGCCATGAAAAAAT
GATAAGTAGCATCCTCTTGCATGCATCATATGTTGTTCAATACACACAAGGGCCAGGGCG
GCTGCAGAGATGCGAACGTCCTTTGGCAACTTGGGTTTATATATAACCCACATCTCCTAC
ATCCATCATGTGATGAATCAGCAGGGGCTTGGTGTATCCCAAGCATGTCAAATATGATCA
ATATATGGTTGGAGCGCGCCAGAGTGGTGGGTTGCGAGAGCTATTGTGCGTTCAACTTGA
TTGGGCAGCGGCCATTTTTGCTTGTGTACCATGTCTGATAGTGGTAGAGGGAATGTTTTC
ATCTCACATTCTGTCGAGGCTCCTTG
■■Homology search results ■■ -
sp_hit_id P0ACV5
Definition sp|P0ACV5|YCIS_SHIFL Inner membrane protein yciS OS=Shigella flexneri
Align length 24
Score (bit) 31.6
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945299|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N23, 5'
(566 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P0ACV5|YCIS_SHIFL Inner membrane protein yciS OS=Shigella fle... 32 2.9
sp|P0ACV4|YCIS_ECOLI Inner membrane protein yciS OS=Escherichia ... 32 2.9
sp|P16145|CYBH_RHOCA Probable Ni/Fe-hydrogenase B-type cytochrom... 30 8.3
sp|Q8TCG5|CPT1C_HUMAN Carnitine O-palmitoyltransferase 1, brain ... 30 8.3

>sp|P0ACV5|YCIS_SHIFL Inner membrane protein yciS OS=Shigella
flexneri GN=yciS PE=3 SV=1
Length = 102

Score = 31.6 bits (70), Expect = 2.9
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +3

Query: 66 RRIKRVERRLSPATKCSVCAHTSA 137
R+IKR+E +LSPAT +V H+SA
Sbjct: 76 RKIKRLENQLSPATDVAVVPHSSA 99


>sp|P0ACV4|YCIS_ECOLI Inner membrane protein yciS OS=Escherichia
coli (strain K12) GN=yciS PE=1 SV=1
Length = 102

Score = 31.6 bits (70), Expect = 2.9
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +3

Query: 66 RRIKRVERRLSPATKCSVCAHTSA 137
R+IKR+E +LSPAT +V H+SA
Sbjct: 76 RKIKRLENQLSPATDVAVVPHSSA 99


>sp|P16145|CYBH_RHOCA Probable Ni/Fe-hydrogenase B-type cytochrome
subunit OS=Rhodobacter capsulatus GN=hupC PE=1 SV=1
Length = 262

Score = 30.0 bits (66), Expect = 8.3
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3

Query: 273 LFNTHKGQGGCRDANVLWQLGFIYNPHLLHPSCDESAGAWCIPSMSNMINIWLE-RARVV 449
L+ GQGG D+ W LG++ N LH G W I + +I+I+ R V+
Sbjct: 184 LYAEGAGQGGVTDSLFGWVLGYVQNSQRLHTL--HHLGMWAIVIFA-IIHIYAAVREDVM 240

Query: 450 GCESYCAFNLIGQRPF 497
+S + + G R F
Sbjct: 241 SRQSMVSTMISGHRTF 256


>sp|Q8TCG5|CPT1C_HUMAN Carnitine O-palmitoyltransferase 1, brain
isoform OS=Homo sapiens GN=CPT1C PE=2 SV=1
Length = 803

Score = 30.0 bits (66), Expect = 8.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -1

Query: 563 GASTECEMKTFPLPLSDMVHKQKWPLPNQVERTIALATHHSGALQPYID 417
G ST+ K P P + +W LP+Q+ +I+LA + L +D
Sbjct: 494 GYSTDGHCKGHPDPTLPQPQRLQWDLPDQIHSSISLALRGAKILSENVD 542


tr_hit_id Q4SS85
Definition tr|Q4SS85|Q4SS85_TETNG Chromosome 11 SCAF14479, whole genome shotgun sequence OS=Tetraodon nigroviridis
Align length 53
Score (bit) 33.9
E-value 6.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945299|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0008_N23, 5'
(566 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4SS85|Q4SS85_TETNG Chromosome 11 SCAF14479, whole genome sho... 34 6.4

>tr|Q4SS85|Q4SS85_TETNG Chromosome 11 SCAF14479, whole genome
shotgun sequence OS=Tetraodon nigroviridis
GN=GSTENG00013550001 PE=4 SV=1
Length = 321

Score = 33.9 bits (76), Expect = 6.4
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2

Query: 209 AILCEECHEKMISSILLHASYVVQYTQGPGRLQRCERPLATWVYI*PTSPTSI 367
++ C+ C +K I+ L + ++ P + Q CE P TW ++ P P +I
Sbjct: 148 SVQCQHCDKKYINGFFLQEHMLRRH---PSQCQNCECPSHTWQHLTPLGPLNI 197