DK945467 |
Clone id |
YMU02A01NGRL0009_G14 |
Library |
YMU02 |
Length |
496 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_G14. 5' end sequence. |
Accession |
DK945467 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
TCGCACCTTTCCCACTGCGGAAGCAAGCTATGGCGAAGATGGCGCGCGTAGCAGACGTTG CGTACAAGTCAACCGCCATATTCCTTGGGGCATGCACCATTGTATTTGGAGCAAACCTTG TGTACAACGTGTCCCGTGGCATCGCCTGGCATTTGAACAGTTCCTCTAAGCAAGCAGTCC CAATGGAGCGGCCTAGTCCCAGTTCCCAATCTCCTTCAACCACTAAAAGTTGAGAAATAA GCCCACTGGTTATGTGCTGGTGGTGTTATCAAAAGCTTACAAATTTCTGGAATTAGAAAA GGACTCAGATTTGTATATTTTGGTATTGGTTGACATTTATGAAGTGGTCCAGCTTTCAGC TGTCTAGTGGCTACCCCTGCAAATTGGGTTAAGGGGAGTTAAGCTATGGAAAGTAATGAG ATGATTTGCATTGCANAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAA AAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q74ZZ2 |
Definition |
sp|Q74ZZ2|SWF1_ASHGO Palmitoyltransferase SWF1 OS=Ashbya gossypii |
Align length |
29 |
Score (bit) |
35.0 |
E-value |
0.14 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SRY2 |
Definition |
tr|A9SRY2|A9SRY2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
49 |
Score (bit) |
48.5 |
E-value |
0.0002 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945467|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0009_G14, 5' (436 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SRY2|A9SRY2_PHYPA Predicted protein OS=Physcomitrella paten... 49 2e-04 tr|Q852C1|Q852C1_ORYSJ Os03g0824500 protein OS=Oryza sativa subs... 36 0.84 tr|Q10BB2|Q10BB2_ORYSJ Putative uncharacterized protein OS=Oryza... 36 0.84 tr|A2XNI9|A2XNI9_ORYSI Putative uncharacterized protein OS=Oryza... 36 0.84 tr|B6T132|B6T132_MAIZE Putative uncharacterized protein OS=Zea m... 36 1.1 tr|Q94F43|Q94F43_ARATH AT3g47831/T23J7 (Putative uncharacterized... 35 1.4 tr|A9NWG5|A9NWG5_PICSI Putative uncharacterized protein OS=Picea... 35 1.4 tr|A7PD92|A7PD92_VITVI Chromosome chr17 scaffold_12, whole genom... 33 5.4 tr|Q4RI07|Q4RI07_TETNG Chromosome 8 SCAF15044, whole genome shot... 33 7.1 tr|B4JXH6|B4JXH6_DROGR GH17958 OS=Drosophila grimshawi GN=GH1795... 33 9.2 tr|A8PMU6|A8PMU6_9COXI Enhanced entry protein EnhA OS=Rickettsie... 33 9.3
>tr|A9SRY2|A9SRY2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_134275 PE=4 SV=1 Length = 50
Score = 48.5 bits (114), Expect = 2e-04 Identities = 20/49 (40%), Positives = 31/49 (63%) Frame = +3
Query: 39 MARVADVAYKSTAIFLGACTIVFGANLVYNVSRGIAWHLNSSSKQAVPM 185 MA+ ADVA++S LG T+ G NL++N++RGI+WH + P+ Sbjct: 1 MAKFADVAHRSVTAGLGLATLWVGGNLIFNITRGISWHYSQDKVLLFPL 49
>tr|Q852C1|Q852C1_ORYSJ Os03g0824500 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0081B07.2 PE=4 SV=1 Length = 50
Score = 36.2 bits (82), Expect = 0.84 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +3
Query: 48 VADVAYKSTAIFLGACTIVFGANLVYNVSRGIAWHLNSS 164 VADVA+K+ LG T+ NV RG++WH S Sbjct: 3 VADVAFKALTAGLGVATLYLAGTFSVNVYRGLSWHSEQS 41
>tr|Q10BB2|Q10BB2_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=LOC_Os03g60950 PE=4 SV=1 Length = 67
Score = 36.2 bits (82), Expect = 0.84 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +3
Query: 48 VADVAYKSTAIFLGACTIVFGANLVYNVSRGIAWHLNSS 164 VADVA+K+ LG T+ NV RG++WH S Sbjct: 3 VADVAFKALTAGLGVATLYLAGTFSVNVYRGLSWHSEQS 41
>tr|A2XNI9|A2XNI9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14132 PE=4 SV=1 Length = 50
Score = 36.2 bits (82), Expect = 0.84 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +3
Query: 48 VADVAYKSTAIFLGACTIVFGANLVYNVSRGIAWHLNSS 164 VADVA+K+ LG T+ NV RG++WH S Sbjct: 3 VADVAFKALTAGLGVATLYLAGTFSVNVYRGLSWHSEQS 41
>tr|B6T132|B6T132_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1 Length = 50
Score = 35.8 bits (81), Expect = 1.1 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +3
Query: 48 VADVAYKSTAIFLGACTIVFGANLVYNVSRGIAWHLNSSSKQAVPME 188 V D+A+K+ LG T+ A NV RG++WH S + E Sbjct: 3 VGDLAFKALTAGLGVATLYLAATFSVNVYRGLSWHSEQSKLEKAKTE 49
>tr|Q94F43|Q94F43_ARATH AT3g47831/T23J7 (Putative uncharacterized protein) OS=Arabidopsis thaliana PE=4 SV=1 Length = 57
Score = 35.4 bits (80), Expect = 1.4 Identities = 18/47 (38%), Positives = 26/47 (55%) Frame = +3
Query: 30 MAKMARVADVAYKSTAIFLGACTIVFGANLVYNVSRGIAWHLNSSSK 170 M + R D ++K+ LG TI A +NV RG++WH N+ SK Sbjct: 1 MGIVTRAGDWSFKAFTAGLGLATIYLTATFSFNVYRGLSWH-NAQSK 46
>tr|A9NWG5|A9NWG5_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 65
Score = 35.4 bits (80), Expect = 1.4 Identities = 16/44 (36%), Positives = 25/44 (56%) Frame = +3
Query: 39 MARVADVAYKSTAIFLGACTIVFGANLVYNVSRGIAWHLNSSSK 170 M + D+A+K+ LG +I G N N+ GI+WH N+ +K Sbjct: 12 MGKAGDIAFKTFTGVLGVTSIYLGFNFAVNLYNGISWH-NAQTK 54
>tr|A7PD92|A7PD92_VITVI Chromosome chr17 scaffold_12, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016184001 PE=4 SV=1 Length = 91
Score = 33.5 bits (75), Expect = 5.4 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +3
Query: 18 RKQAMAKMARVADVAYKSTAIFLGACTIVFGANLVYNVSRGIAWH 152 +++ M+ M + D A+K+ L T+ A NV RG AWH Sbjct: 31 KRRNMSAMNKAGDWAFKALVGGLSVATVYLSATFSVNVYRGFAWH 75
>tr|Q4RI07|Q4RI07_TETNG Chromosome 8 SCAF15044, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00034091001 PE=4 SV=1 Length = 358
Score = 33.1 bits (74), Expect = 7.1 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -1
Query: 187 SIGTACLEELFKCQAM-PRDTLYTRFAPNTM 98 SI +CLEEL KCQ + PR+ L+T F TM Sbjct: 231 SIYLSCLEELMKCQVIYPREQLFTIFELETM 261
>tr|B4JXH6|B4JXH6_DROGR GH17958 OS=Drosophila grimshawi GN=GH17958 PE=4 SV=1 Length = 987
Score = 32.7 bits (73), Expect = 9.2 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Frame = -1
Query: 259 QHITSGLISQLLVVEGDWELGLGRSIGTACLEELFKCQAMPRDT-LYTRFAPNTMVHAPR 83 +H ++Q + D++ +G+ + + C E + RD LY ++AP MV PR Sbjct: 575 EHADPHSLAQFAISINDYDEVIGQQLKSDCFAEALQTLCRQRDLQLYYKYAPQLMVRLPR 634
Query: 82 NMAVDLYATSA 50 L A A Sbjct: 635 QTIDALIALDA 645
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