DK945520
Clone id YMU02A01NGRL0009_J10
Library
Length 388
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_J10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GGTAGCCTACTATCAAACGCATCCCCTCCACTGCAGAACCTCATGCTTGCATAGCAGATT
ATTTCCTCTGGTCCACCCATTACCGTTCAATCTTGCTGGGAACATTACTGAAATGCTATT
GGAAATGGACAACTCAAAACTGCTTTTGTTGTTGGAGTCCCCCCATTCTTTAGCATTGAA
AATGAATGAGGCCGTCACACTTCTGCAACACCTCATCAAAGTGTGTCAAGATGCTCCCGA
CCCTCTCGTGCAGATGACAGCTCACCTTGTAACTATTGCCTCATCATTTTTTTGTCTCGC
CCCTCTCATCAGATCTTAATAACTGCTTGATAATTTAACCGTATTCTGAATGAAAGATAT
CGAATGTAATCAAACCCATGACATGCCA
■■Homology search results ■■ -
sp_hit_id Q4VXU2
Definition sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens
Align length 62
Score (bit) 35.0
E-value 0.12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945520|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_J10, 5'
(388 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Ho... 35 0.12
sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sa... 31 1.7
sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B ... 31 1.7
sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=... 30 4.9
sp|P43053|GYRB_MYCHO DNA gyrase subunit B OS=Mycoplasma hominis ... 29 6.4
sp|P23026|PA2A_PSETE Phospholipase A2, textilotoxin A chain OS=P... 29 6.5
sp|Q5XI94|CA112_RAT Uncharacterized protein C1orf112 homolog OS=... 29 8.4

>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo
sapiens GN=PABPC1L PE=2 SV=1
Length = 614

Score = 35.0 bits (79), Expect = 0.12
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +2

Query: 23 PLHCRTSCLHSRLFPLVHPLPFNLAGNITEMXXXXXXXXXXXXXXXXXXXXXKMNEAVTL 202
PLH + + RL+PL+H + LAG IT M K++EAV +
Sbjct: 540 PLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAV 599

Query: 203 LQ 208
LQ
Sbjct: 600 LQ 601


>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo
sapiens GN=PABPC4 PE=1 SV=1
Length = 644

Score = 31.2 bits (69), Expect = 1.7
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = +2

Query: 47 LHSRLFPLVHPLPFNLAGNITEMXXXXXXXXXXXXXXXXXXXXXKMNEAVTLLQ 208
L RLFPL+ + NLAG IT M K++EAV +LQ
Sbjct: 571 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 624


>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B
OS=Xenopus laevis GN=epabp-B PE=2 SV=1
Length = 629

Score = 31.2 bits (69), Expect = 1.7
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +2

Query: 23 PLHCRTSCLHSRLFPLVHPLPFNLAGNITEMXXXXXXXXXXXXXXXXXXXXXKMNEAVTL 202
PL + L R++PL+H + LAG IT M K+ EAV +
Sbjct: 551 PLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAV 610

Query: 203 LQ 208
LQ
Sbjct: 611 LQ 612


>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein
OS=Xenopus tropicalis GN=epabp PE=2 SV=1
Length = 629

Score = 29.6 bits (65), Expect = 4.9
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2

Query: 47 LHSRLFPLVHPLPFNLAGNITEMXXXXXXXXXXXXXXXXXXXXXKMNEAVTLLQ 208
L RL+PL+H + LAG IT M K+ EAV +LQ
Sbjct: 559 LGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQ 612


>sp|P43053|GYRB_MYCHO DNA gyrase subunit B OS=Mycoplasma hominis
GN=gyrB PE=3 SV=1
Length = 648

Score = 29.3 bits (64), Expect = 6.4
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -1

Query: 280 GNSYKVSCHLHERVGSILTHFD---EVLQKCDGLIHFQC*RMGGL 155
G++YKVS LH S++ EV K DG +H+Q R GG+
Sbjct: 110 GSNYKVSGGLHGVGASVVNALSSEFEVWVKRDGKLHYQQFRNGGI 154


>sp|P23026|PA2A_PSETE Phospholipase A2, textilotoxin A chain
OS=Pseudonaja textilis PE=1 SV=2
Length = 118

Score = 29.3 bits (64), Expect = 6.5
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3

Query: 108 LKCYWKWTTQNCFCCWSPPIL*H*K*MRPSHFCNTSSKCVKML 236
L CY KWTT N +C + P +C T +KC + +
Sbjct: 58 LGCYPKWTTYNYYCGANGP------------YCKTRTKCQRFV 88


>sp|Q5XI94|CA112_RAT Uncharacterized protein C1orf112 homolog
OS=Rattus norvegicus PE=2 SV=1
Length = 905

Score = 28.9 bits (63), Expect = 8.4
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +2

Query: 194 VTLLQHLIKVCQDAPDPLVQMTAHLVTIASSFFCLAP 304
VTL+ HLIK C P VQ+T V + FF +AP
Sbjct: 529 VTLVAHLIKSC---PGRCVQLTNLSVLLRRLFFFMAP 562


tr_hit_id Q4SJ33
Definition tr|Q4SJ33|Q4SJ33_TETNG Chromosome 21 SCAF14577, whole genome shotgun sequence OS=Tetraodon nigroviridis
Align length 62
Score (bit) 35.4
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945520|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_J10, 5'
(388 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q4SJ33|Q4SJ33_TETNG Chromosome 21 SCAF14577, whole genome sho... 35 1.4
tr|Q4VXT4|Q4VXT4_HUMAN Chromosome 20 open reading frame 119 OS=H... 35 1.9
tr|O57336|O57336_PETMA Polyadenylate binding protein OS=Petromyz... 33 9.3

>tr|Q4SJ33|Q4SJ33_TETNG Chromosome 21 SCAF14577, whole genome
shotgun sequence OS=Tetraodon nigroviridis
GN=GSTENG00017378001 PE=4 SV=1
Length = 380

Score = 35.4 bits (80), Expect = 1.4
Identities = 21/62 (33%), Positives = 28/62 (45%)
Frame = +2

Query: 23 PLHCRTSCLHSRLFPLVHPLPFNLAGNITEMXXXXXXXXXXXXXXXXXXXXXKMNEAVTL 202
PLH + L RLFPL+ + +LAG IT M K++EAV +
Sbjct: 298 PLHEQKQMLGERLFPLIQAMHLSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAV 357

Query: 203 LQ 208
LQ
Sbjct: 358 LQ 359


>tr|Q4VXT4|Q4VXT4_HUMAN Chromosome 20 open reading frame 119 OS=Homo
sapiens GN=C20orf119 PE=2 SV=1
Length = 168

Score = 35.0 bits (79), Expect = 1.9
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +2

Query: 23 PLHCRTSCLHSRLFPLVHPLPFNLAGNITEMXXXXXXXXXXXXXXXXXXXXXKMNEAVTL 202
PLH + + RL+PL+H + LAG IT M K++EAV +
Sbjct: 94 PLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAV 153

Query: 203 LQ 208
LQ
Sbjct: 154 LQ 155


>tr|O57336|O57336_PETMA Polyadenylate binding protein OS=Petromyzon
marinus GN=PABP PE=2 SV=1
Length = 630

Score = 32.7 bits (73), Expect = 9.3
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = +2

Query: 23 PLHCRTSCLHSRLFPLVHPLPFNLAGNITEMXXXXXXXXXXXXXXXXXXXXXKMNEAVTL 202
P H + L RLFPL+H + LAG IT M K+ EAV +
Sbjct: 553 PPHEQKQMLGERLFPLIHGMYPTLAGKITGMLLEIDNSELLHMLESPESLRAKVEEAVAV 612

Query: 203 LQ 208
LQ
Sbjct: 613 LQ 614