DK945556
Clone id YMU02A01NGRL0009_L06
Library
Length 204
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_L06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
CTGTACTATTCGCTCCCTTGCTTGAGAACACCTTCCATGGAGTCCTTGGCCTCCCTGCCT
ATCCGGACAACTGCCTTCGCGGCATCACCCGCGTCAGCGTCGTTGCCCCCCAGAAGCTGC
CTGCGCTGTGCTCTCCATGACTCATCCGAGGGTCCTCGTCCATGTCCTTCTCTACGCTCG
CATTCCGTGGCCATGACGACCCCT
■■Homology search results ■■ -
sp_hit_id Q2PC93
Definition sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus
Align length 50
Score (bit) 35.4
E-value 0.09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945556|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_L06, 5'
(204 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1 35 0.090
sp|O54929|WSB2_MOUSE WD repeat and SOCS box-containing protein 2... 31 1.7
sp|Q9NYS7|WSB2_HUMAN WD repeat and SOCS box-containing protein 2... 31 1.7
sp|Q0V8J1|WSB2_BOVIN WD repeat and SOCS box-containing protein 2... 31 2.2
sp|P98167|SSPO_BOVIN SCO-spondin OS=Bos taurus GN=SSPO PE=2 SV=2 31 2.2
sp|Q3KP66|CA106_HUMAN Uncharacterized protein C1orf106 OS=Homo s... 31 2.2
sp|Q9UL51|HCN2_HUMAN Potassium/sodium hyperpolarization-activate... 30 4.9
sp|Q93HE4|Y2367_STRAW Putative reductase SAV_2367 OS=Streptomyce... 29 6.4
sp|P98060|NAS35_CAEEL Zinc metalloproteinase dpy-31 OS=Caenorhab... 29 6.4
sp|Q700K0|SSPO_RAT SCO-spondin OS=Rattus norvegicus GN=Sspo PE=2... 29 8.4

>sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1
Length = 5255

Score = 35.4 bits (80), Expect = 0.090
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = +2

Query: 38 WSPWPPCLSGQLPSRHHPRQRRCPPEAACAVLSMTHPRVLVHVLLYARIP 187
WSPW PC S R R CPP C L++ HV A P
Sbjct: 3708 WSPWGPC-SASCGGGEQLRHRDCPPPGGCPGLALQSKTCNTHVCREAGCP 3756



Score = 31.2 bits (69), Expect = 1.7
Identities = 18/51 (35%), Positives = 18/51 (35%), Gaps = 21/51 (41%)
Frame = +2

Query: 35 PWSPWPPCLSG-----QLPSR----------------HHPRQRRCPPEAAC 124
PW PW PC G QL SR H RQR CP C
Sbjct: 3649 PWGPWSPCSPGCQAGTQLASRQCNNPTPQLGGRGCSGHSQRQRPCPATEGC 3699



Score = 31.2 bits (69), Expect = 1.7
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = +2

Query: 35 PWSPWPPCL----SGQLPSRHHPRQRRCPPEAAC 124
PWSPW PC G+ S HP ++R A C
Sbjct: 4984 PWSPWSPCSVTCGMGERLSHRHPLRQRLYEGAEC 5017


>sp|O54929|WSB2_MOUSE WD repeat and SOCS box-containing protein 2
OS=Mus musculus GN=Wsb2 PE=2 SV=1
Length = 404

Score = 31.2 bits (69), Expect = 1.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2

Query: 32 LPWSPWPPCLSGQLPSRHHPRQRRCPPEAACAVLS 136
L +SPWP S +L +RHHP+ P+ +C +L+
Sbjct: 97 LAFSPWPSPPSRKLWARHHPQ----APDVSCLILA 127


>sp|Q9NYS7|WSB2_HUMAN WD repeat and SOCS box-containing protein 2
OS=Homo sapiens GN=WSB2 PE=2 SV=1
Length = 404

Score = 31.2 bits (69), Expect = 1.7
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2

Query: 32 LPWSPWPPCLSGQLPSRHHPRQRRCPPEAACAVLS 136
L +SPWP S +L +RHHP+ P+ +C VL+
Sbjct: 97 LAFSPWPSPPSRKLWARHHPQ----VPDVSCLVLA 127


>sp|Q0V8J1|WSB2_BOVIN WD repeat and SOCS box-containing protein 2
OS=Bos taurus GN=WSB2 PE=2 SV=1
Length = 406

Score = 30.8 bits (68), Expect = 2.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2

Query: 32 LPWSPWPPCLSGQLPSRHHPRQRRCPPEAACAVLS 136
L +SPWP S +L +RHHP+ P+ +C +L+
Sbjct: 99 LAFSPWPSPPSKKLWARHHPQ----VPDVSCLILA 129


>sp|P98167|SSPO_BOVIN SCO-spondin OS=Bos taurus GN=SSPO PE=2 SV=2
Length = 5146

Score = 30.8 bits (68), Expect = 2.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2

Query: 35 PWSPWPPCLSGQLPSRHHPRQRRCPPEAACAVLSMTHPRVLVHV 166
PW+PW C + P+R H + R C A SM P +L V
Sbjct: 3168 PWTPWSECSASCGPARRH-KHRFCTRPPGGAPSSMAPPLLLSSV 3210



Score = 25.8 bits (55), Expect(2) = 7.0
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2

Query: 35 PWSPWPPCLSGQLPSRHHPRQRRCPP 112
PW PW PC L H R+ PP
Sbjct: 3457 PWGPWSPC-EVCLGRSHRSRECSWPP 3481



Score = 22.7 bits (47), Expect(2) = 7.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1

Query: 127 CALHDSSEGPRPCP 168
C+ +SEG RPCP
Sbjct: 3477 CSWPPTSEGGRPCP 3490


>sp|Q3KP66|CA106_HUMAN Uncharacterized protein C1orf106 OS=Homo
sapiens GN=C1orf106 PE=2 SV=1
Length = 663

Score = 30.8 bits (68), Expect = 2.2
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2

Query: 35 PWSPWPPCLSGQLPSRHHPRQRRCPPEAACAV 130
PW W S +LP++ P RCPP CA+
Sbjct: 51 PWDSWG---SSRLPTQPGPGWSRCPPSLLCAL 79


>sp|Q9UL51|HCN2_HUMAN Potassium/sodium hyperpolarization-activated
cyclic nucleotide-gated channel 2 OS=Homo sapiens
GN=HCN2 PE=1 SV=3
Length = 889

Score = 29.6 bits (65), Expect = 4.9
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +2

Query: 35 PWSPWPPCLSGQLPSRHHPRQRRCPPEAA 121
P P PP G P +H PR PPEAA
Sbjct: 38 PPPPAPPPGPGPAPPQHPPRAEALPPEAA 66


>sp|Q93HE4|Y2367_STRAW Putative reductase SAV_2367 OS=Streptomyces
avermitilis GN=SAV_2367 PE=3 SV=2
Length = 392

Score = 29.3 bits (64), Expect = 6.4
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3

Query: 21 LENTFHGVLGLPAYPDNCLRGIT--RVSVVAPQKLPALCSP*LIRGSSS 161
++ T G L L A+P C R + R V P+K PA L+ GSSS
Sbjct: 1 MKPTGRGYLLLDAHPVGCFRSVELMRAEVPVPEKPPARRPTALVIGSSS 49


>sp|P98060|NAS35_CAEEL Zinc metalloproteinase dpy-31
OS=Caenorhabditis elegans GN=dpy-31 PE=1 SV=2
Length = 592

Score = 29.3 bits (64), Expect = 6.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2

Query: 38 WSPWPPCLSGQLPSRHHPRQRRCPPEAACA 127
WSPW C + R R CPP AC+
Sbjct: 496 WSPWTACSATCGACGSRMRTRTCPPGNACS 525


>sp|Q700K0|SSPO_RAT SCO-spondin OS=Rattus norvegicus GN=Sspo PE=2 SV=1
Length = 5141

Score = 28.9 bits (63), Expect = 8.4
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Frame = +2

Query: 38 WSPWPPCLSGQLPSRHHPRQRRC----PPEAACAVLSMTHPRVLVHVLL 172
W PW PC S H RQR C P +H +VL ++ L
Sbjct: 2546 WGPWEPC-SVSCGGGHQSRQRSCVDPPPKNGGAPCPGPSHEKVLCNLQL 2593


tr_hit_id B7G9J6
Definition tr|B7G9J6|B7G9J6_PHATR Predicted protein OS=Phaeodactylum tricornutum CCAP 1055/1
Align length 26
Score (bit) 33.9
E-value 4.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945556|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_L06, 5'
(204 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7G9J6|B7G9J6_PHATR Predicted protein OS=Phaeodactylum tricor... 34 4.1

>tr|B7G9J6|B7G9J6_PHATR Predicted protein OS=Phaeodactylum
tricornutum CCAP 1055/1 GN=PHATRDRAFT_39762 PE=4 SV=1
Length = 917

Score = 33.9 bits (76), Expect = 4.1
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +2

Query: 35 PWSPWPPCLSGQLPSRHHPRQRRCPP 112
P +PWPP ++ +PSR PR+ R PP
Sbjct: 789 PTAPWPPPVTWSMPSRILPRRLRSPP 814