DK945606
Clone id YMU02A01NGRL0009_O01
Library
Length 316
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0009_O01. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GAAGCCGGAGTTCGTTGACATCATCAAAGCTGCATCGGTAAAGAAATCTTAATATTCTGT
CCTTGAACGACTTCCCTAATAATTCTATTGAAATAACTTGAACCAACTCAACTCCTCTGC
ATTGAGCGATTCCGTCAAATGTACCGTCATGTTGCATACAATGAGTGCAAACTTCATCCC
TCATTTCCTTGAGAGGCAGGGGCCTAATTCACCTTCTGAAATCTTGTCTCATTGAGGAAT
TCATTGATTGCAAGTTTTATGGGAGCAATTTTGATCAGGTTTTTGGCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P48493
Definition sp|P48493|TPIS_LACSA Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa
Align length 16
Score (bit) 32.0
E-value 0.98
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945606|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O01, 5'
(287 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P48493|TPIS_LACSA Triosephosphate isomerase, cytosolic (Fragm... 32 0.98
sp|P48491|TPIS_ARATH Triosephosphate isomerase, cytosolic OS=Ara... 32 0.98
sp|Q6Y290|GOLI_RAT Goliath homolog OS=Rattus norvegicus GN=Rnf13... 32 1.3
sp|Q8VEM1|GOLI_MOUSE Goliath homolog OS=Mus musculus GN=Rnf130 P... 32 1.3
sp|Q86XS8|GOLI_HUMAN Goliath homolog OS=Homo sapiens GN=RNF130 P... 32 1.3
sp|P48495|TPIS_PETHY Triosephosphate isomerase, cytosolic OS=Pet... 30 4.8
sp|P21820|TPIS_COPJA Triosephosphate isomerase, cytosolic OS=Cop... 30 4.8
sp|A6SW71|SYI_JANMA Isoleucyl-tRNA synthetase OS=Janthinobacteri... 29 8.3
sp|P07988|PSPB_HUMAN Pulmonary surfactant-associated protein B O... 29 8.3

>sp|P48493|TPIS_LACSA Triosephosphate isomerase, cytosolic
(Fragment) OS=Lactuca sativa PE=2 SV=1
Length = 195

Score = 32.0 bits (71), Expect = 0.98
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2

Query: 2 KPEFVDIIKAASVKKS 49
KPEF+DIIKAA VKKS
Sbjct: 179 KPEFIDIIKAAEVKKS 194


>sp|P48491|TPIS_ARATH Triosephosphate isomerase, cytosolic
OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2
Length = 254

Score = 32.0 bits (71), Expect = 0.98
Identities = 14/16 (87%), Positives = 15/16 (93%)
Frame = +2

Query: 2 KPEFVDIIKAASVKKS 49
KPEF+DIIKAA VKKS
Sbjct: 238 KPEFIDIIKAAEVKKS 253


>sp|Q6Y290|GOLI_RAT Goliath homolog OS=Rattus norvegicus GN=Rnf130
PE=1 SV=1
Length = 419

Score = 31.6 bits (70), Expect = 1.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3

Query: 180 GMKFALIVCNMTVHLTESLNAEELSWF 100
G+ AL +C M + T SLNA E+ WF
Sbjct: 393 GLLSALTLCYMIIRATASLNANEVEWF 419


>sp|Q8VEM1|GOLI_MOUSE Goliath homolog OS=Mus musculus GN=Rnf130 PE=2
SV=1
Length = 419

Score = 31.6 bits (70), Expect = 1.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3

Query: 180 GMKFALIVCNMTVHLTESLNAEELSWF 100
G+ AL +C M + T SLNA E+ WF
Sbjct: 393 GLLSALTLCYMIIRATASLNANEVEWF 419


>sp|Q86XS8|GOLI_HUMAN Goliath homolog OS=Homo sapiens GN=RNF130 PE=2
SV=1
Length = 419

Score = 31.6 bits (70), Expect = 1.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3

Query: 180 GMKFALIVCNMTVHLTESLNAEELSWF 100
G+ AL +C M + T SLNA E+ WF
Sbjct: 393 GLLSALTLCYMIIRATASLNANEVEWF 419


>sp|P48495|TPIS_PETHY Triosephosphate isomerase, cytosolic
OS=Petunia hybrida GN=TPIP1 PE=2 SV=1
Length = 254

Score = 29.6 bits (65), Expect = 4.8
Identities = 12/16 (75%), Positives = 15/16 (93%)
Frame = +2

Query: 2 KPEFVDIIKAASVKKS 49
KPEF+DIIKAA VK++
Sbjct: 238 KPEFIDIIKAAEVKRN 253


>sp|P21820|TPIS_COPJA Triosephosphate isomerase, cytosolic OS=Coptis
japonica PE=2 SV=1
Length = 253

Score = 29.6 bits (65), Expect = 4.8
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +2

Query: 2 KPEFVDIIKAASVKKS 49
KPEFVDIIK+A+VK S
Sbjct: 238 KPEFVDIIKSATVKSS 253


>sp|A6SW71|SYI_JANMA Isoleucyl-tRNA synthetase OS=Janthinobacterium
sp. (strain Marseille) GN=ileS PE=3 SV=1
Length = 958

Score = 28.9 bits (63), Expect = 8.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3

Query: 195 GRGLIHLLKSCLIEEFIDCKFYGSNFDQV 281
G G++H + IE+FI CK +G D++
Sbjct: 348 GTGIVHSAPAYGIEDFISCKSHGMRDDEI 376


>sp|P07988|PSPB_HUMAN Pulmonary surfactant-associated protein B
OS=Homo sapiens GN=SFTPB PE=1 SV=3
Length = 381

Score = 28.9 bits (63), Expect = 8.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2

Query: 133 GIAQCRGVELVQVISIELLGKSFKDRILRFLYRCSFDD 20
GI QC ++ LLG+ + R + RCS DD
Sbjct: 244 GICQCLAERYSVILLDTLLGRMLPQLVCRLVLRCSMDD 281


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945606|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0009_O01, 5'
(287 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******