DK945662 |
Clone id |
YMU02A01NGRL0010_A19 |
Library |
YMU02 |
Length |
351 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_A19. 5' end sequence. |
Accession |
DK945662 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL2646Contig1 |
Sequence |
GTGATGCTATATTTTACGAGCAGCAACAATTGCTTGCTATTGAACAAGGGCAGCAGCAAC ATGTCTCAGATTTGGCGGAGAAGAACAGACTTCTGCGTATGCTTGAGGACAAGAATATGT TCCAGGCCCAAGTGGTGAGTCGACGCAAAGATGAGTTTGTTAAGCTGAAAACGGAGAGGG ACGAAAGGGCTGCACAGTTGAAGCTGCTCCGCAAGCAGGAACGCGAGCGTAGAAGAAAAA TGGAGTACTATCGCAGGCAAGAGGAGGTTCGGTTGGTTAGACTAAGGGAGGAGGAAGCAG CCAGGAAAAGAGCTCAAGAAATAAAAAAAAAAAAAAAACAAAATGTCATGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LD55 |
Definition |
sp|Q9LD55|EIF3A_ARATH Eukaryotic translation initiation factor 3 subunit A OS=Arabidopsis thaliana |
Align length |
43 |
Score (bit) |
59.3 |
E-value |
6.0e-09 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q70Z43 |
Definition |
tr|Q70Z43|Q70Z43_ORYSA Translation initiation factor 3 OS=Oryza sativa |
Align length |
45 |
Score (bit) |
59.7 |
E-value |
7.0e-08 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945662|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0010_A19, 5' (315 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q70Z43|Q70Z43_ORYSA Translation initiation factor 3 OS=Oryza ... 60 7e-08 tr|Q5ZEN1|Q5ZEN1_ORYSJ Putative translation initiation factor (O... 60 7e-08 tr|B8ACZ5|B8ACZ5_ORYSI Putative uncharacterized protein OS=Oryza... 60 7e-08 tr|A2ZNP2|A2ZNP2_ORYSJ Putative uncharacterized protein OS=Oryza... 60 7e-08 tr|Q0WW10|Q0WW10_ARATH Putative uncharacterized protein At4g1142... 59 9e-08 tr|A9SFU3|A9SFU3_PHYPA Predicted protein OS=Physcomitrella paten... 55 1e-06 tr|A9SRY1|A9SRY1_PHYPA Predicted protein (Fragment) OS=Physcomit... 54 3e-06 tr|A9RFG7|A9RFG7_PHYPA Predicted protein OS=Physcomitrella paten... 53 7e-06 tr|A7PRW8|A7PRW8_VITVI Chromosome chr14 scaffold_27, whole genom... 51 3e-05 tr|Q6ZNE1|Q6ZNE1_HUMAN cDNA FLJ16186 fis, clone BRTHA2007060, mo... 50 6e-05 tr|A9PFC4|A9PFC4_POPTR Putative uncharacterized protein OS=Popul... 44 0.003 tr|Q48FJ4|Q48FJ4_PSE14 Cobalamin biosynthesis protein, putative ... 33 5.5
>tr|Q70Z43|Q70Z43_ORYSA Translation initiation factor 3 OS=Oryza sativa GN=eIF3a PE=2 SV=1 Length = 986
Score = 59.7 bits (143), Expect = 7e-08 Identities = 28/45 (62%), Positives = 34/45 (75%) Frame = +3
Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDERAA 194 H DL EKNRL RMLE KN+FQ ++V RR+ EF +LK ERDER + Sbjct: 733 HAGDLQEKNRLSRMLEHKNIFQERIVQRREAEFSRLKKERDERTS 777
>tr|Q5ZEN1|Q5ZEN1_ORYSJ Putative translation initiation factor (Os01g0120800 protein) OS=Oryza sativa subsp. japonica GN=P0684C01.5-1 PE=4 SV=1 Length = 986
Score = 59.7 bits (143), Expect = 7e-08 Identities = 28/45 (62%), Positives = 34/45 (75%) Frame = +3
Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDERAA 194 H DL EKNRL RMLE KN+FQ ++V RR+ EF +LK ERDER + Sbjct: 733 HAGDLQEKNRLSRMLEHKNIFQERIVQRREAEFSRLKKERDERTS 777
>tr|B8ACZ5|B8ACZ5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00169 PE=4 SV=1 Length = 986
Score = 59.7 bits (143), Expect = 7e-08 Identities = 28/45 (62%), Positives = 34/45 (75%) Frame = +3
Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDERAA 194 H DL EKNRL RMLE KN+FQ ++V RR+ EF +LK ERDER + Sbjct: 733 HAGDLQEKNRLSRMLEHKNIFQERIVQRREAEFSRLKKERDERTS 777
>tr|A2ZNP2|A2ZNP2_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_000164 PE=4 SV=1 Length = 1019
Score = 59.7 bits (143), Expect = 7e-08 Identities = 28/45 (62%), Positives = 34/45 (75%) Frame = +3
Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDERAA 194 H DL EKNRL RMLE KN+FQ ++V RR+ EF +LK ERDER + Sbjct: 761 HAGDLQEKNRLSRMLEHKNIFQERIVQRREAEFSRLKKERDERTS 805
>tr|Q0WW10|Q0WW10_ARATH Putative uncharacterized protein At4g11420 OS=Arabidopsis thaliana GN=At4g11420 PE=2 SV=1 Length = 987
Score = 59.3 bits (142), Expect = 9e-08 Identities = 28/43 (65%), Positives = 36/43 (83%) Frame = +3
Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDER 188 H SDL EKNRL RML +K +FQAQV+SRR+ EF +++TER+ER Sbjct: 733 HESDLKEKNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEREER 775
>tr|A9SFU3|A9SFU3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_211874 PE=4 SV=1 Length = 1013
Score = 55.5 bits (132), Expect = 1e-06 Identities = 27/62 (43%), Positives = 37/62 (59%) Frame = +3
Query: 3 DAIFYXXXXXXXXXXXXXXHVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERD 182 D FY H +D+ EKNRL+RM EDK +F+ QV+SRR+ EF +L+ R+ Sbjct: 717 DEKFYQEQQEQALEQSKKQHDTDVVEKNRLIRMAEDKEIFEEQVISRRQGEFARLRRLRE 776
Query: 183 ER 188 ER Sbjct: 777 ER 778
>tr|A9SRY1|A9SRY1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_215083 PE=4 SV=1 Length = 865
Score = 54.3 bits (129), Expect = 3e-06 Identities = 28/64 (43%), Positives = 39/64 (60%) Frame = +3
Query: 3 DAIFYXXXXXXXXXXXXXXHVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERD 182 D FY H +D+ EK+RLLRM +DK++FQ QVV+RR+ EF +L+ R+ Sbjct: 717 DERFYKQQQEQAIEQSKNQHETDVVEKHRLLRMADDKDVFQRQVVARRQGEFERLQRLRE 776
Query: 183 ERAA 194 ER A Sbjct: 777 ERLA 780
>tr|A9RFG7|A9RFG7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_113179 PE=4 SV=1 Length = 1021
Score = 53.1 bits (126), Expect = 7e-06 Identities = 30/64 (46%), Positives = 36/64 (56%) Frame = +3
Query: 3 DAIFYXXXXXXXXXXXXXXHVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERD 182 D FY H +D+ EK+RL RM EDK +FQ QVVSRR EF +LK R+ Sbjct: 717 DERFYQQQQEQAIEQSKKQHETDVVEKHRLERMGEDKEIFQRQVVSRRHGEFERLKRLRE 776
Query: 183 ERAA 194 ER A Sbjct: 777 ERLA 780
>tr|A7PRW8|A7PRW8_VITVI Chromosome chr14 scaffold_27, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00022664001 PE=4 SV=1 Length = 977
Score = 51.2 bits (121), Expect = 3e-05 Identities = 23/43 (53%), Positives = 34/43 (79%) Frame = +3
Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDER 188 H DL EKNRL+RML+ K +FQ +V++RR+ E+ +L+ ER+ER Sbjct: 733 HDGDLREKNRLVRMLDKKMIFQERVMNRRQAEYSRLRAEREER 775
>tr|Q6ZNE1|Q6ZNE1_HUMAN cDNA FLJ16186 fis, clone BRTHA2007060, moderately similar to EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 10 OS=Homo sapiens PE=1 SV=1 Length = 957
Score = 50.1 bits (118), Expect = 6e-05 Identities = 23/43 (53%), Positives = 33/43 (76%) Frame = +3
Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDER 188 H DL EK RL+RM+ +K ++QA+VVS R+ EF +L+ ER+ER Sbjct: 733 HEGDLKEKERLVRMMGNKEVYQARVVSHRQAEFNRLRREREER 775
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