DK945662
Clone id YMU02A01NGRL0010_A19
Library
Length 351
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_A19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GTGATGCTATATTTTACGAGCAGCAACAATTGCTTGCTATTGAACAAGGGCAGCAGCAAC
ATGTCTCAGATTTGGCGGAGAAGAACAGACTTCTGCGTATGCTTGAGGACAAGAATATGT
TCCAGGCCCAAGTGGTGAGTCGACGCAAAGATGAGTTTGTTAAGCTGAAAACGGAGAGGG
ACGAAAGGGCTGCACAGTTGAAGCTGCTCCGCAAGCAGGAACGCGAGCGTAGAAGAAAAA
TGGAGTACTATCGCAGGCAAGAGGAGGTTCGGTTGGTTAGACTAAGGGAGGAGGAAGCAG
CCAGGAAAAGAGCTCAAGAAATAAAAAAAAAAAAAAAACAAAATGTCATGT
■■Homology search results ■■ -
sp_hit_id Q9LD55
Definition sp|Q9LD55|EIF3A_ARATH Eukaryotic translation initiation factor 3 subunit A OS=Arabidopsis thaliana
Align length 43
Score (bit) 59.3
E-value 6.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945662|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_A19, 5'
(315 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9LD55|EIF3A_ARATH Eukaryotic translation initiation factor 3... 59 6e-09
sp|Q9XHR2|EIF3A_MAIZE Eukaryotic translation initiation factor 3... 54 2e-07
sp|Q40554|EIF3A_TOBAC Eukaryotic translation initiation factor 3... 51 2e-06
sp|O14022|ATCY_SCHPO Probable cation-transporting ATPase C29A4.1... 32 1.3
sp|P23116|EIF3A_MOUSE Eukaryotic translation initiation factor 3... 30 2.9
sp|Q14152|EIF3A_HUMAN Eukaryotic translation initiation factor 3... 30 2.9

>sp|Q9LD55|EIF3A_ARATH Eukaryotic translation initiation factor 3
subunit A OS=Arabidopsis thaliana GN=TIF3A1 PE=1 SV=1
Length = 987

Score = 59.3 bits (142), Expect = 6e-09
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3

Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDER 188
H SDL EKNRL RML +K +FQAQV+SRR+ EF +++TER+ER
Sbjct: 733 HESDLKEKNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEREER 775


>sp|Q9XHR2|EIF3A_MAIZE Eukaryotic translation initiation factor 3
subunit A OS=Zea mays GN=TIF3A1 PE=2 SV=1
Length = 962

Score = 54.3 bits (129), Expect = 2e-07
Identities = 26/43 (60%), Positives = 30/43 (69%)
Frame = +3

Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDER 188
H SDL EKNRL RMLE KN Q +++ R EF +LK ERDER
Sbjct: 727 HASDLQEKNRLSRMLEHKNALQERIIQERAAEFGRLKKERDER 769


>sp|Q40554|EIF3A_TOBAC Eukaryotic translation initiation factor 3
subunit A OS=Nicotiana tabacum GN=TIF3A1 PE=2 SV=1
Length = 958

Score = 50.8 bits (120), Expect = 2e-06
Identities = 24/43 (55%), Positives = 30/43 (69%)
Frame = +3

Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDER 188
H DL EK RL RMLE+K + Q +VVS R+ EF ++K ER ER
Sbjct: 732 HAGDLEEKRRLARMLENKRILQEKVVSSREAEFTRMKRERQER 774


>sp|O14022|ATCY_SCHPO Probable cation-transporting ATPase C29A4.19c
OS=Schizosaccharomyces pombe GN=SPAC29A4.19c PE=2 SV=1
Length = 1096

Score = 31.6 bits (70), Expect = 1.3
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1

Query: 31 CLLLNKGSSNMSQIWRRRTDFCVCLRTRICS 123
C+ +N+ S +S IW+++T C+C +C+
Sbjct: 1021 CIGINQSSEFLSPIWKKKTYVCLCTTIGLCN 1051


>sp|P23116|EIF3A_MOUSE Eukaryotic translation initiation factor 3
subunit A OS=Mus musculus GN=Eif3a PE=2 SV=3
Length = 1344

Score = 30.4 bits (67), Expect = 2.9
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3

Query: 72 LAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDERAA 194
L KNR+ RMLED+++F ++ + R+ + + + +ER A
Sbjct: 744 LEHKNRMSRMLEDRDLFVMRLKAARQSVYEEKLKQFEERLA 784


>sp|Q14152|EIF3A_HUMAN Eukaryotic translation initiation factor 3
subunit A OS=Homo sapiens GN=EIF3A PE=1 SV=1
Length = 1382

Score = 30.4 bits (67), Expect = 2.9
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3

Query: 72 LAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDERAA 194
L KNR+ RMLED+++F ++ + R+ + + + +ER A
Sbjct: 744 LEHKNRMSRMLEDRDLFVMRLKAARQSVYEEKLKQFEERLA 784


tr_hit_id Q70Z43
Definition tr|Q70Z43|Q70Z43_ORYSA Translation initiation factor 3 OS=Oryza sativa
Align length 45
Score (bit) 59.7
E-value 7.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK945662|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0010_A19, 5'
(315 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q70Z43|Q70Z43_ORYSA Translation initiation factor 3 OS=Oryza ... 60 7e-08
tr|Q5ZEN1|Q5ZEN1_ORYSJ Putative translation initiation factor (O... 60 7e-08
tr|B8ACZ5|B8ACZ5_ORYSI Putative uncharacterized protein OS=Oryza... 60 7e-08
tr|A2ZNP2|A2ZNP2_ORYSJ Putative uncharacterized protein OS=Oryza... 60 7e-08
tr|Q0WW10|Q0WW10_ARATH Putative uncharacterized protein At4g1142... 59 9e-08
tr|A9SFU3|A9SFU3_PHYPA Predicted protein OS=Physcomitrella paten... 55 1e-06
tr|A9SRY1|A9SRY1_PHYPA Predicted protein (Fragment) OS=Physcomit... 54 3e-06
tr|A9RFG7|A9RFG7_PHYPA Predicted protein OS=Physcomitrella paten... 53 7e-06
tr|A7PRW8|A7PRW8_VITVI Chromosome chr14 scaffold_27, whole genom... 51 3e-05
tr|Q6ZNE1|Q6ZNE1_HUMAN cDNA FLJ16186 fis, clone BRTHA2007060, mo... 50 6e-05
tr|A9PFC4|A9PFC4_POPTR Putative uncharacterized protein OS=Popul... 44 0.003
tr|Q48FJ4|Q48FJ4_PSE14 Cobalamin biosynthesis protein, putative ... 33 5.5

>tr|Q70Z43|Q70Z43_ORYSA Translation initiation factor 3 OS=Oryza
sativa GN=eIF3a PE=2 SV=1
Length = 986

Score = 59.7 bits (143), Expect = 7e-08
Identities = 28/45 (62%), Positives = 34/45 (75%)
Frame = +3

Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDERAA 194
H DL EKNRL RMLE KN+FQ ++V RR+ EF +LK ERDER +
Sbjct: 733 HAGDLQEKNRLSRMLEHKNIFQERIVQRREAEFSRLKKERDERTS 777


>tr|Q5ZEN1|Q5ZEN1_ORYSJ Putative translation initiation factor
(Os01g0120800 protein) OS=Oryza sativa subsp. japonica
GN=P0684C01.5-1 PE=4 SV=1
Length = 986

Score = 59.7 bits (143), Expect = 7e-08
Identities = 28/45 (62%), Positives = 34/45 (75%)
Frame = +3

Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDERAA 194
H DL EKNRL RMLE KN+FQ ++V RR+ EF +LK ERDER +
Sbjct: 733 HAGDLQEKNRLSRMLEHKNIFQERIVQRREAEFSRLKKERDERTS 777


>tr|B8ACZ5|B8ACZ5_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_00169 PE=4 SV=1
Length = 986

Score = 59.7 bits (143), Expect = 7e-08
Identities = 28/45 (62%), Positives = 34/45 (75%)
Frame = +3

Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDERAA 194
H DL EKNRL RMLE KN+FQ ++V RR+ EF +LK ERDER +
Sbjct: 733 HAGDLQEKNRLSRMLEHKNIFQERIVQRREAEFSRLKKERDERTS 777


>tr|A2ZNP2|A2ZNP2_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_000164 PE=4 SV=1
Length = 1019

Score = 59.7 bits (143), Expect = 7e-08
Identities = 28/45 (62%), Positives = 34/45 (75%)
Frame = +3

Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDERAA 194
H DL EKNRL RMLE KN+FQ ++V RR+ EF +LK ERDER +
Sbjct: 761 HAGDLQEKNRLSRMLEHKNIFQERIVQRREAEFSRLKKERDERTS 805


>tr|Q0WW10|Q0WW10_ARATH Putative uncharacterized protein At4g11420
OS=Arabidopsis thaliana GN=At4g11420 PE=2 SV=1
Length = 987

Score = 59.3 bits (142), Expect = 9e-08
Identities = 28/43 (65%), Positives = 36/43 (83%)
Frame = +3

Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDER 188
H SDL EKNRL RML +K +FQAQV+SRR+ EF +++TER+ER
Sbjct: 733 HESDLKEKNRLSRMLGNKEIFQAQVISRRQAEFDRIRTEREER 775


>tr|A9SFU3|A9SFU3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_211874 PE=4 SV=1
Length = 1013

Score = 55.5 bits (132), Expect = 1e-06
Identities = 27/62 (43%), Positives = 37/62 (59%)
Frame = +3

Query: 3 DAIFYXXXXXXXXXXXXXXHVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERD 182
D FY H +D+ EKNRL+RM EDK +F+ QV+SRR+ EF +L+ R+
Sbjct: 717 DEKFYQEQQEQALEQSKKQHDTDVVEKNRLIRMAEDKEIFEEQVISRRQGEFARLRRLRE 776

Query: 183 ER 188
ER
Sbjct: 777 ER 778


>tr|A9SRY1|A9SRY1_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_215083 PE=4 SV=1
Length = 865

Score = 54.3 bits (129), Expect = 3e-06
Identities = 28/64 (43%), Positives = 39/64 (60%)
Frame = +3

Query: 3 DAIFYXXXXXXXXXXXXXXHVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERD 182
D FY H +D+ EK+RLLRM +DK++FQ QVV+RR+ EF +L+ R+
Sbjct: 717 DERFYKQQQEQAIEQSKNQHETDVVEKHRLLRMADDKDVFQRQVVARRQGEFERLQRLRE 776

Query: 183 ERAA 194
ER A
Sbjct: 777 ERLA 780


>tr|A9RFG7|A9RFG7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_113179 PE=4 SV=1
Length = 1021

Score = 53.1 bits (126), Expect = 7e-06
Identities = 30/64 (46%), Positives = 36/64 (56%)
Frame = +3

Query: 3 DAIFYXXXXXXXXXXXXXXHVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERD 182
D FY H +D+ EK+RL RM EDK +FQ QVVSRR EF +LK R+
Sbjct: 717 DERFYQQQQEQAIEQSKKQHETDVVEKHRLERMGEDKEIFQRQVVSRRHGEFERLKRLRE 776

Query: 183 ERAA 194
ER A
Sbjct: 777 ERLA 780


>tr|A7PRW8|A7PRW8_VITVI Chromosome chr14 scaffold_27, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00022664001
PE=4 SV=1
Length = 977

Score = 51.2 bits (121), Expect = 3e-05
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +3

Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDER 188
H DL EKNRL+RML+ K +FQ +V++RR+ E+ +L+ ER+ER
Sbjct: 733 HDGDLREKNRLVRMLDKKMIFQERVMNRRQAEYSRLRAEREER 775


>tr|Q6ZNE1|Q6ZNE1_HUMAN cDNA FLJ16186 fis, clone BRTHA2007060,
moderately similar to EUKARYOTIC TRANSLATION INITIATION
FACTOR 3 SUBUNIT 10 OS=Homo sapiens PE=1 SV=1
Length = 957

Score = 50.1 bits (118), Expect = 6e-05
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = +3

Query: 60 HVSDLAEKNRLLRMLEDKNMFQAQVVSRRKDEFVKLKTERDER 188
H DL EK RL+RM+ +K ++QA+VVS R+ EF +L+ ER+ER
Sbjct: 733 HEGDLKEKERLVRMMGNKEVYQARVVSHRQAEFNRLRREREER 775