DK945816 |
Clone id |
YMU02A01NGRL0010_I13 |
Library |
YMU02 |
Length |
393 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_I13. 5' end sequence. |
Accession |
DK945816 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
AAAGTCGAAACCATTTGGCACACACAGAATACTGCGTTGGTGGACATGGCTTCGATGCCT CTGGTGGCGAGAGGGGAAGCAGACTCTGAGATTGTAGAGAGGGACTGTGGCGATGGTGAG GCTCAGCAAAAGGCGTTAAGAGGCGGGGGCGATGAGGCTGAGGAAGAAGAAGATGTGTGC CGCATCTGCAGGACCTCTGGCGAGAAAGGATCTCCTCTCTACTATCCTTGCGCCTGCAGT GGTAGCATCAAGTATGTCCACCAGGATTGCCTTCTTCAATGGCTTAGTCATAGTAATGCT CGGCAATGCGAGGTATGTCTGATTTGCCACTCCTTCATGCGTTAGAGAGAGAGAGAGAGA AAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5R9W1 |
Definition |
sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii |
Align length |
48 |
Score (bit) |
78.2 |
E-value |
1.0e-14 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T9H9 |
Definition |
tr|A9T9H9|A9T9H9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
48 |
Score (bit) |
96.3 |
E-value |
7.0e-19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945816|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0010_I13, 5' (359 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9T9H9|A9T9H9_PHYPA Predicted protein (Fragment) OS=Physcomit... 96 7e-19 tr|A7P9M5|A7P9M5_VITVI Chromosome chr3 scaffold_8, whole genome ... 96 7e-19 tr|A5BR82|A5BR82_VITVI Putative uncharacterized protein OS=Vitis... 96 7e-19 tr|O49494|O49494_ARATH Putative uncharacterized protein AT4g3410... 95 2e-18 tr|B8B0I7|B8B0I7_ORYSI Putative uncharacterized protein OS=Oryza... 93 6e-18 tr|A3BDX4|A3BDX4_ORYSJ Putative uncharacterized protein OS=Oryza... 93 6e-18 tr|A9RRW7|A9RRW7_PHYPA Predicted protein OS=Physcomitrella paten... 93 8e-18 tr|Q67WD9|Q67WD9_ORYSJ Os06g0639100 protein OS=Oryza sativa subs... 88 2e-16 tr|A7PLE4|A7PLE4_VITVI Chromosome chr7 scaffold_20, whole genome... 88 2e-16 tr|A5BFY7|A5BFY7_VITVI Putative uncharacterized protein OS=Vitis... 88 2e-16 tr|A7RMD6|A7RMD6_NEMVE Predicted protein OS=Nematostella vectens... 81 3e-14 tr|Q0UF98|Q0UF98_PHANO Putative uncharacterized protein OS=Phaeo... 81 3e-14 tr|B6K4U4|B6K4U4_SCHJP Putative uncharacterized protein OS=Schiz... 81 3e-14 tr|B2AV15|B2AV15_PODAN Predicted CDS Pa_7_4410 OS=Podospora anse... 81 3e-14 tr|A7ELY7|A7ELY7_SCLS1 Putative uncharacterized protein OS=Scler... 80 4e-14 tr|A6SG38|A6SG38_BOTFB Putative uncharacterized protein OS=Botry... 80 4e-14 tr|Q4SVD6|Q4SVD6_TETNG Chromosome undetermined SCAF13763, whole ... 80 5e-14 tr|A5E6F1|A5E6F1_LODEL Putative uncharacterized protein OS=Lodde... 80 7e-14 tr|B2VQP0|B2VQP0_PYRTR RING finger membrane protein OS=Pyrenopho... 79 9e-14 tr|Q4SMY4|Q4SMY4_TETNG Chromosome 6 SCAF14544, whole genome shot... 79 1e-13 tr|B3VKM1|B3VKM1_PIG Membrane-associated ring finger 6 OS=Sus sc... 78 2e-13 tr|A8QGL8|A8QGL8_BRUMA Probable mrna stability protein-fission y... 78 2e-13 tr|B4DT33|B4DT33_HUMAN cDNA FLJ55749, highly similar to Homo sap... 78 2e-13 tr|B3KM28|B3KM28_HUMAN cDNA FLJ10108 fis, clone HEMBA1002609, hi... 78 2e-13 tr|A5PKZ4|A5PKZ4_HUMAN Membrane-associated ring finger (C3HC4) 6... 78 2e-13 tr|B4QNH4|B4QNH4_DROSI GD13395 OS=Drosophila simulans GN=GD13395... 78 3e-13 tr|B4HW78|B4HW78_DROSE GM14125 OS=Drosophila sechellia GN=GM1412... 78 3e-13 tr|Q4X1V4|Q4X1V4_ASPFU RING finger membrane protein OS=Aspergill... 78 3e-13 tr|B0XRR5|B0XRR5_ASPFC RING finger membrane protein OS=Aspergill... 78 3e-13 tr|A1DGG7|A1DGG7_NEOFI RING finger membrane protein OS=Neosartor... 78 3e-13
>tr|A9T9H9|A9T9H9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_317 PE=4 SV=1 Length = 1031
Score = 96.3 bits (238), Expect = 7e-19 Identities = 40/48 (83%), Positives = 45/48 (93%) Frame = +1
Query: 175 VCRICRTSGEKGSPLYYPCACSGSIKYVHQDCLLQWLSHSNARQCEVC 318 VCRICRT G++ S LY+PCACSGSIKYVHQ+CLLQWL+HSNARQCEVC Sbjct: 8 VCRICRTPGDEESSLYHPCACSGSIKYVHQECLLQWLNHSNARQCEVC 55
>tr|A7P9M5|A7P9M5_VITVI Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036626001 PE=4 SV=1 Length = 1096
Score = 96.3 bits (238), Expect = 7e-19 Identities = 41/54 (75%), Positives = 45/54 (83%) Frame = +1
Query: 175 VCRICRTSGEKGSPLYYPCACSGSIKYVHQDCLLQWLSHSNARQCEVCLICHSF 336 VCRICR G+ +PL YPCACSGSIK+VHQDCLLQWL+HSNARQCEVC SF Sbjct: 59 VCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKYAFSF 112
>tr|A5BR82|A5BR82_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004874 PE=4 SV=1 Length = 1177
Score = 96.3 bits (238), Expect = 7e-19 Identities = 41/54 (75%), Positives = 45/54 (83%) Frame = +1
Query: 175 VCRICRTSGEKGSPLYYPCACSGSIKYVHQDCLLQWLSHSNARQCEVCLICHSF 336 VCRICR G+ +PL YPCACSGSIK+VHQDCLLQWL+HSNARQCEVC SF Sbjct: 59 VCRICRNPGDAENPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKYAFSF 112
>tr|O49494|O49494_ARATH Putative uncharacterized protein AT4g34100 OS=Arabidopsis thaliana GN=AT4g34100 PE=2 SV=1 Length = 1051
Score = 94.7 bits (234), Expect = 2e-18 Identities = 41/54 (75%), Positives = 45/54 (83%) Frame = +1
Query: 175 VCRICRTSGEKGSPLYYPCACSGSIKYVHQDCLLQWLSHSNARQCEVCLICHSF 336 VCRICR G+ +PL YPCACSGSIK+VHQDCLLQWL+HSNARQCEVC SF Sbjct: 67 VCRICRNPGDADNPLRYPCACSGSIKFVHQDCLLQWLNHSNARQCEVCKHPFSF 120
>tr|B8B0I7|B8B0I7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_23839 PE=4 SV=1 Length = 1190
Score = 93.2 bits (230), Expect = 6e-18 Identities = 40/54 (74%), Positives = 43/54 (79%) Frame = +1
Query: 175 VCRICRTSGEKGSPLYYPCACSGSIKYVHQDCLLQWLSHSNARQCEVCLICHSF 336 VCRICR G+ PL YPCACSGSIK+VHQDCLLQWL HSN+RQCEVC SF Sbjct: 38 VCRICRNPGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSF 91
>tr|A3BDX4|A3BDX4_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_021246 PE=4 SV=1 Length = 1111
Score = 93.2 bits (230), Expect = 6e-18 Identities = 40/54 (74%), Positives = 43/54 (79%) Frame = +1
Query: 175 VCRICRTSGEKGSPLYYPCACSGSIKYVHQDCLLQWLSHSNARQCEVCLICHSF 336 VCRICR G+ PL YPCACSGSIK+VHQDCLLQWL HSN+RQCEVC SF Sbjct: 38 VCRICRNPGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEVCKHAFSF 91
>tr|A9RRW7|A9RRW7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_160604 PE=4 SV=1 Length = 722
Score = 92.8 bits (229), Expect = 8e-18 Identities = 46/95 (48%), Positives = 57/95 (60%), Gaps = 11/95 (11%) Frame = +1
Query: 70 RGEADSEIVERDCGDGE-----------AQQKALRXXXXXXXXXXXVCRICRTSGEKGSP 216 R +A ER+CG+ E + + VCRICRT G++ S Sbjct: 11 RTDAQDLAEERECGESERGRGVGVGGESGNRSHQQLPDGDPDDEEDVCRICRTPGDEESS 70
Query: 217 LYYPCACSGSIKYVHQDCLLQWLSHSNARQCEVCL 321 LY+PCACSGSIKYVHQ+CLL+WL+HSNARQCEV L Sbjct: 71 LYHPCACSGSIKYVHQECLLRWLNHSNARQCEVWL 105
>tr|Q67WD9|Q67WD9_ORYSJ Os06g0639100 protein OS=Oryza sativa subsp. japonica GN=P0523F01.32 PE=4 SV=1 Length = 129
Score = 88.2 bits (217), Expect = 2e-16 Identities = 37/47 (78%), Positives = 40/47 (85%) Frame = +1
Query: 175 VCRICRTSGEKGSPLYYPCACSGSIKYVHQDCLLQWLSHSNARQCEV 315 VCRICR G+ PL YPCACSGSIK+VHQDCLLQWL HSN+RQCEV Sbjct: 38 VCRICRNPGDDEHPLRYPCACSGSIKFVHQDCLLQWLDHSNSRQCEV 84
>tr|A7PLE4|A7PLE4_VITVI Chromosome chr7 scaffold_20, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019537001 PE=4 SV=1 Length = 1034
Score = 88.2 bits (217), Expect = 2e-16 Identities = 35/48 (72%), Positives = 40/48 (83%) Frame = +1
Query: 175 VCRICRTSGEKGSPLYYPCACSGSIKYVHQDCLLQWLSHSNARQCEVC 318 VCRICR SG+ +PLYYPCAC GSIK+VH+DCLLQWL S R+CEVC Sbjct: 22 VCRICRNSGDSDNPLYYPCACRGSIKFVHEDCLLQWLDRSKTRRCEVC 69
>tr|A5BFY7|A5BFY7_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042268 PE=4 SV=1 Length = 1324
Score = 88.2 bits (217), Expect = 2e-16 Identities = 35/48 (72%), Positives = 40/48 (83%) Frame = +1
Query: 175 VCRICRTSGEKGSPLYYPCACSGSIKYVHQDCLLQWLSHSNARQCEVC 318 VCRICR SG+ +PLYYPCAC GSIK+VH+DCLLQWL S R+CEVC Sbjct: 434 VCRICRNSGDSDNPLYYPCACRGSIKFVHEDCLLQWLDRSKTRRCEVC 481
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