DK945838 |
Clone id |
YMU02A01NGRL0010_J20 |
Library |
YMU02 |
Length |
540 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0010_J20. 5' end sequence. |
Accession |
DK945838 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
GGAAATGACCAGAAAATTCATGAACAAGCCTGTGCGAATTCTTGTGAAGAGGGACGAGTC GACTTTGGAAGGTATCAAGCAGTTCTACGTGGATGTTAACAAGGAGGATTGGAAGCTCGA TACGCTGTGCGATTTATATGAAACTCTTGCGATCACGCAGAGTGTCATATTTGTAAACAC CAGAAGGAAGGTCGACTGGCTTACTGACAAAATGCGAGCTAGGGACCACACCGTTTCTGC CACTCACGGGGACATGGATCAAAATACAAGAGACGTGATCGTGCGTGAGTTTAGATCTGG GTCTTCCCGTGTACTGATTACTACTGATCTTTTGGCAAGGGGTATTGATGTTCAGCAGGT ATCATTGGTGATCAGTTATGATCTGCCTACTCAGCCTGAGAACTACCTGCATCGTATCGG TCGTGGTGGTCGATTTGGAAGGAAGGGTGTGGCTATCAACTTTGTTACAAAAGATGATGA GAGGATGTTGCAGGACATTCAGAGGTTCTACAATGTGGTTGTTGAAGAGCTCCCTTCGAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6Z2Z4 |
Definition |
sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica |
Align length |
179 |
Score (bit) |
309.0 |
E-value |
5.0e-84 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LRR8 |
Definition |
tr|B8LRR8|B8LRR8_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
179 |
Score (bit) |
316.0 |
E-value |
6.0e-85 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK945838|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0010_J20, 5' (540 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8LRR8|B8LRR8_PICSI Putative uncharacterized protein OS=Picea... 316 6e-85 tr|A8IP17|A8IP17_CHLRE Eukaryotic initiation factor 4A-like prot... 311 1e-83 tr|A9SGN5|A9SGN5_PHYPA Predicted protein OS=Physcomitrella paten... 311 2e-83 tr|A7P4J8|A7P4J8_VITVI Chromosome chr4 scaffold_6, whole genome ... 311 2e-83 tr|A5BNE8|A5BNE8_VITVI Putative uncharacterized protein OS=Vitis... 311 2e-83 tr|A9TZ99|A9TZ99_PHYPA Predicted protein OS=Physcomitrella paten... 310 2e-83 tr|A9P851|A9P851_POPTR Putative uncharacterized protein OS=Popul... 310 2e-83 tr|Q8H1A5|Q8H1A5_PEA DEAD box RNA helicase OS=Pisum sativum PE=2... 310 3e-83 tr|B4FBK3|B4FBK3_MAIZE Eukaryotic initiation factor 4A OS=Zea ma... 310 4e-83 tr|A9SY53|A9SY53_PHYPA Predicted protein OS=Physcomitrella paten... 310 4e-83 tr|B7EMF9|B7EMF9_ORYSJ cDNA clone:J033048E24, full insert sequen... 309 5e-83 tr|A3A343|A3A343_ORYSJ Putative uncharacterized protein OS=Oryza... 309 5e-83 tr|A2X0V4|A2X0V4_ORYSI Putative uncharacterized protein OS=Oryza... 309 5e-83 tr|Q9SYS8|Q9SYS8_MAIZE Translation initiation factor 4A2 (Fragme... 309 7e-83 tr|B7EPR0|B7EPR0_ORYSJ cDNA clone:001-114-H08, full insert seque... 309 7e-83 tr|A9RVE1|A9RVE1_PHYPA Predicted protein OS=Physcomitrella paten... 308 9e-83 tr|A2Q689|A2Q689_MEDTR Helicase, C-terminal OS=Medicago truncatu... 308 9e-83 tr|B7FJJ2|B7FJJ2_MEDTR Putative uncharacterized protein OS=Medic... 308 1e-82 tr|A7PE49|A7PE49_VITVI Chromosome chr11 scaffold_13, whole genom... 308 2e-82 tr|A9PA36|A9PA36_POPTR Putative uncharacterized protein OS=Popul... 307 2e-82 tr|A7P6N2|A7P6N2_VITVI Chromosome chr9 scaffold_7, whole genome ... 307 2e-82 tr|O24449|O24449_MAIZE Translational initiation factor eIF-4A OS... 307 3e-82 tr|B8LMF4|B8LMF4_PICSI Putative uncharacterized protein OS=Picea... 306 3e-82 tr|O24558|O24558_MAIZE Translation initiation factor OS=Zea mays... 306 4e-82 tr|A9PA53|A9PA53_POPTR Putative uncharacterized protein OS=Popul... 306 4e-82 tr|Q9SE87|Q9SE87_BRAOL EIF4A protein (Fragment) OS=Brassica oler... 306 6e-82 tr|Q6T8C6|Q6T8C6_HELAN Initiation factor eIF4A-15 OS=Helianthus ... 306 6e-82 tr|Q8H1A4|Q8H1A4_PEA DEAD box RNA helicase OS=Pisum sativum PE=2... 305 8e-82 tr|Q4U474|Q4U474_PENAM Eukaryotic initiation factor 4A OS=Pennis... 305 8e-82 tr|A9PD17|A9PD17_POPTR Putative uncharacterized protein OS=Popul... 305 1e-81
>tr|B8LRR8|B8LRR8_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 413
Score = 316 bits (809), Expect = 6e-85 Identities = 159/179 (88%), Positives = 165/179 (92%) Frame = +2
Query: 2 EMTRKFMNKPVRILVKRDESTLEGIKQFYVDVNKEDWKLDTLCDLYETLAITQSVIFVNT 181 E+TRKFM+KPVRILVKRDE TLEGIKQFYV+V KEDWKLDTLCDLYETLAITQSVIFVNT Sbjct: 229 EITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETLAITQSVIFVNT 288
Query: 182 RRKVDWLTDKMRARDHTVSATHGDMDQNTRDVIVREFRSGSSRVLITTDLLARGIDVQQV 361 RRKVDWLTDKMRARDHTVSATHGDMDQNTRD+I+REFRSGSSRVLITTDLLARGIDVQQV Sbjct: 289 RRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348
Query: 362 SLVISYDLPTQPENYLHXXXXXXXXXXXXVAINFVTKDDERMLQDIQRFYNVVVEELPS 538 SLVI+YDLPTQPENYLH VAINFVTKDDERMLQDIQRFYNVVVEELPS Sbjct: 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQRFYNVVVEELPS 407
>tr|A8IP17|A8IP17_CHLRE Eukaryotic initiation factor 4A-like protein OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_188942 PE=4 SV=1 Length = 413
Score = 311 bits (798), Expect = 1e-83 Identities = 156/179 (87%), Positives = 163/179 (91%) Frame = +2
Query: 2 EMTRKFMNKPVRILVKRDESTLEGIKQFYVDVNKEDWKLDTLCDLYETLAITQSVIFVNT 181 E+TRKFMNKPVRILVKRDE TLEGIKQFYV+V+KE+WKLDTLCDLYETLAITQSVIF NT Sbjct: 229 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVIFANT 288
Query: 182 RRKVDWLTDKMRARDHTVSATHGDMDQNTRDVIVREFRSGSSRVLITTDLLARGIDVQQV 361 RRKVDWLTDKMR RDHTVSATHGDMDQNTRDVI+REFRSGSSRVLITTDLLARGIDVQQV Sbjct: 289 RRKVDWLTDKMRERDHTVSATHGDMDQNTRDVIMREFRSGSSRVLITTDLLARGIDVQQV 348
Query: 362 SLVISYDLPTQPENYLHXXXXXXXXXXXXVAINFVTKDDERMLQDIQRFYNVVVEELPS 538 SLVI+YDLPTQPENYLH VAINFVTKDDERMLQDIQRFYN V+EELPS Sbjct: 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLQDIQRFYNTVIEELPS 407
>tr|A9SGN5|A9SGN5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_233331 PE=3 SV=1 Length = 413
Score = 311 bits (796), Expect = 2e-83 Identities = 154/179 (86%), Positives = 165/179 (92%) Frame = +2
Query: 2 EMTRKFMNKPVRILVKRDESTLEGIKQFYVDVNKEDWKLDTLCDLYETLAITQSVIFVNT 181 E+TRKFMNKPV+ILVKRDE TLEGIKQFYV+V++E+WKLDTLCDLYETLAITQSVIF+NT Sbjct: 229 EITRKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDLYETLAITQSVIFINT 288
Query: 182 RRKVDWLTDKMRARDHTVSATHGDMDQNTRDVIVREFRSGSSRVLITTDLLARGIDVQQV 361 RRKVDWLTDKMRARDHTVSATHGDMDQNTRD+I+REFRSGSSRVLITTDLLARGIDVQQV Sbjct: 289 RRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348
Query: 362 SLVISYDLPTQPENYLHXXXXXXXXXXXXVAINFVTKDDERMLQDIQRFYNVVVEELPS 538 SLVI+YDLPTQPENYLH VAINFVTK+DERMLQDIQRFYN VVEELPS Sbjct: 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKEDERMLQDIQRFYNTVVEELPS 407
>tr|A7P4J8|A7P4J8_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032180001 PE=3 SV=1 Length = 413
Score = 311 bits (796), Expect = 2e-83 Identities = 156/179 (87%), Positives = 165/179 (92%) Frame = +2
Query: 2 EMTRKFMNKPVRILVKRDESTLEGIKQFYVDVNKEDWKLDTLCDLYETLAITQSVIFVNT 181 E+TRKFMNKPVRILVKRDE TLEGIKQFYV+V+KE+WKL+TLCDLYETLAITQSVIFVNT Sbjct: 229 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNT 288
Query: 182 RRKVDWLTDKMRARDHTVSATHGDMDQNTRDVIVREFRSGSSRVLITTDLLARGIDVQQV 361 RRKVDWLTDKMR+RDHTVSATHGDMDQNTRD+I+REFRSGSSRVLITTDLLARGIDVQQV Sbjct: 289 RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348
Query: 362 SLVISYDLPTQPENYLHXXXXXXXXXXXXVAINFVTKDDERMLQDIQRFYNVVVEELPS 538 SLVI+YDLPTQPENYLH VAINFVTKDDERML DIQRFYNVVVEELPS Sbjct: 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNVVVEELPS 407
>tr|A5BNE8|A5BNE8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040122 PE=3 SV=1 Length = 413
Score = 311 bits (796), Expect = 2e-83 Identities = 156/179 (87%), Positives = 165/179 (92%) Frame = +2
Query: 2 EMTRKFMNKPVRILVKRDESTLEGIKQFYVDVNKEDWKLDTLCDLYETLAITQSVIFVNT 181 E+TRKFMNKPVRILVKRDE TLEGIKQFYV+V+KE+WKL+TLCDLYETLAITQSVIFVNT Sbjct: 229 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNT 288
Query: 182 RRKVDWLTDKMRARDHTVSATHGDMDQNTRDVIVREFRSGSSRVLITTDLLARGIDVQQV 361 RRKVDWLTDKMR+RDHTVSATHGDMDQNTRD+I+REFRSGSSRVLITTDLLARGIDVQQV Sbjct: 289 RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348
Query: 362 SLVISYDLPTQPENYLHXXXXXXXXXXXXVAINFVTKDDERMLQDIQRFYNVVVEELPS 538 SLVI+YDLPTQPENYLH VAINFVTKDDERML DIQRFYNVVVEELPS Sbjct: 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQRFYNVVVEELPS 407
>tr|A9TZ99|A9TZ99_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_226898 PE=3 SV=1 Length = 413
Score = 310 bits (795), Expect = 2e-83 Identities = 153/179 (85%), Positives = 165/179 (92%) Frame = +2
Query: 2 EMTRKFMNKPVRILVKRDESTLEGIKQFYVDVNKEDWKLDTLCDLYETLAITQSVIFVNT 181 E+TRKFMNKPV+ILVKRDE TLEGIKQFYV+V++E+WKLDTLCDLYETLAITQSVIF+NT Sbjct: 229 EITRKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDLYETLAITQSVIFINT 288
Query: 182 RRKVDWLTDKMRARDHTVSATHGDMDQNTRDVIVREFRSGSSRVLITTDLLARGIDVQQV 361 RRKVDWLTDKMRARDHTVSATHGDMDQNTRD+I+REFRSGSSRVLITTDLLARGIDVQQV Sbjct: 289 RRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348
Query: 362 SLVISYDLPTQPENYLHXXXXXXXXXXXXVAINFVTKDDERMLQDIQRFYNVVVEELPS 538 SLVI+YDLPTQPENYLH VAINFVTK+DERMLQDIQRFYN V+EELPS Sbjct: 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKEDERMLQDIQRFYNTVIEELPS 407
>tr|A9P851|A9P851_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 413
Score = 310 bits (795), Expect = 2e-83 Identities = 155/179 (86%), Positives = 164/179 (91%) Frame = +2
Query: 2 EMTRKFMNKPVRILVKRDESTLEGIKQFYVDVNKEDWKLDTLCDLYETLAITQSVIFVNT 181 E+TRKFMNKPVRILVKRDE TLEGIKQFYV+V+KE+WKL+TLCDLYETLAITQSVIFVNT Sbjct: 229 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNT 288
Query: 182 RRKVDWLTDKMRARDHTVSATHGDMDQNTRDVIVREFRSGSSRVLITTDLLARGIDVQQV 361 RRKVDWLTDKMR+RDHTVSATHGDMDQNTRD+I+REFRSGSSRVLITTDLLARGIDVQQV Sbjct: 289 RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348
Query: 362 SLVISYDLPTQPENYLHXXXXXXXXXXXXVAINFVTKDDERMLQDIQRFYNVVVEELPS 538 SLVI+YDLPTQPENYLH VAINFVTKDDERML DIQRFYNV VEELPS Sbjct: 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQRFYNVTVEELPS 407
>tr|Q8H1A5|Q8H1A5_PEA DEAD box RNA helicase OS=Pisum sativum PE=2 SV=1 Length = 413
Score = 310 bits (794), Expect = 3e-83 Identities = 154/179 (86%), Positives = 165/179 (92%) Frame = +2
Query: 2 EMTRKFMNKPVRILVKRDESTLEGIKQFYVDVNKEDWKLDTLCDLYETLAITQSVIFVNT 181 E+TRKFMNKPVRILVKRDE TLEGIKQFYV+V+KE+WKLDTLCDLYETLAITQSVIFVNT Sbjct: 229 EITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLDTLCDLYETLAITQSVIFVNT 288
Query: 182 RRKVDWLTDKMRARDHTVSATHGDMDQNTRDVIVREFRSGSSRVLITTDLLARGIDVQQV 361 RRKVDWLTDKMR+RDHTVSATHGDMDQNTRD+I+REFRSGSSRVLITTDLLARGIDVQQV Sbjct: 289 RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348
Query: 362 SLVISYDLPTQPENYLHXXXXXXXXXXXXVAINFVTKDDERMLQDIQRFYNVVVEELPS 538 SLVI+YDLPTQPENYLH VAINFVTKDDERML DIQ+FYNV++EELPS Sbjct: 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLGDIQKFYNVLIEELPS 407
>tr|B4FBK3|B4FBK3_MAIZE Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1 Length = 410
Score = 310 bits (793), Expect = 4e-83 Identities = 154/179 (86%), Positives = 164/179 (91%) Frame = +2
Query: 2 EMTRKFMNKPVRILVKRDESTLEGIKQFYVDVNKEDWKLDTLCDLYETLAITQSVIFVNT 181 E+TRKFMNKPVRILVKRDE TLEGIKQFYV+++KEDWKLDTLCDLYETLAITQSVIFVNT Sbjct: 226 EITRKFMNKPVRILVKRDELTLEGIKQFYVNIDKEDWKLDTLCDLYETLAITQSVIFVNT 285
Query: 182 RRKVDWLTDKMRARDHTVSATHGDMDQNTRDVIVREFRSGSSRVLITTDLLARGIDVQQV 361 RRKVDWLTDKMR+RDHTVSATHGDMDQNTRD+I+REFRSGSSRVLITTDLLARGIDVQQV Sbjct: 286 RRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 345
Query: 362 SLVISYDLPTQPENYLHXXXXXXXXXXXXVAINFVTKDDERMLQDIQRFYNVVVEELPS 538 SLVI+YDLPTQPENYLH VAINFVT+DDERML DIQRFYNV VEELP+ Sbjct: 346 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTVEELPA 404
>tr|A9SY53|A9SY53_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_107162 PE=3 SV=1 Length = 413
Score = 310 bits (793), Expect = 4e-83 Identities = 152/179 (84%), Positives = 165/179 (92%) Frame = +2
Query: 2 EMTRKFMNKPVRILVKRDESTLEGIKQFYVDVNKEDWKLDTLCDLYETLAITQSVIFVNT 181 E+TRKFMNKPV+ILVKRDE TLEGIKQFYV+V++E+WKLDTLCDLYETLAITQSVIF+NT Sbjct: 229 EITRKFMNKPVKILVKRDELTLEGIKQFYVNVDREEWKLDTLCDLYETLAITQSVIFINT 288
Query: 182 RRKVDWLTDKMRARDHTVSATHGDMDQNTRDVIVREFRSGSSRVLITTDLLARGIDVQQV 361 RRKVDWLTDKMRARDHTVSATHGDMDQNTRD+I+REFRSGSSRVLITTDLLARGIDVQQV Sbjct: 289 RRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQV 348
Query: 362 SLVISYDLPTQPENYLHXXXXXXXXXXXXVAINFVTKDDERMLQDIQRFYNVVVEELPS 538 SLVI+YDLPTQPENYLH VAINFVT+DD+RMLQDIQRFYN V+EELPS Sbjct: 349 SLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLQDIQRFYNTVIEELPS 407
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