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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK946447
Clone id YMU02A01NGRL0012_K17
Library
Length 482
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0012_K17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAGTAGGCTCGTGGATAACATTTAATCAGGTTGTTGAGCCTGCAATTGTGCCGCCGTGGC
CACTGAATGGTTATGTGAGAGGGGTAACTGCTAAGATTGTAAGAGAAATTCTTGGGGATC
TCCAGCGTGAATGCATTCACCTTGCAGAGATGAAACAGGGAAATGCTGAAGGTGCGTCTG
GAGCTGGATAGTGCTCTCTAATCGTTGCGACATTTCTCATTGAATGTTGTAACTGAAATC
TCACATCAGCTATAAGGAAGCAGGTGATTATACTCCGCCATTTCGTTAAAGCTTACCCTG
ACCCTTGCCTCCATTCCACGTTGTTGATTAATGTCAGTTACCGGTGAAAGATCAGAGCGA
ATTGGATTGAATGTATGGAGAAAGTAATTATAGAAGTCAGTGGTCTGGTGCATAGTATGG
AGAACTTATTTCAATCTTCATCATTCCATTGAAAGTTTGACTTGCAAATAGACAGCAAAC
TT
■■Homology search results ■■ -
sp_hit_id A1RS43
Definition sp|A1RS43|SRP54_PYRIL Signal recognition 54 kDa protein OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)
Align length 52
Score (bit) 29.3
E-value 9.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946447|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_K17, 5'
         (482 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1RS43|SRP54_PYRIL Signal recognition 54 kDa protein OS=Pyrob...    29   9.8  

>sp|A1RS43|SRP54_PYRIL Signal recognition 54 kDa protein
           OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189)
           GN=srp54 PE=3 SV=1
          Length = 433

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 94  RL*EKFLGISSVNAFTLQR*NREMLKVRLELDSAL*SLRHFSLNVVTEISHQ 249
           +L EK  G+S ++  TLQ  +RE+ +  L+ D  L  ++ F+ N V  +  +
Sbjct: 10  KLVEKIRGVSYIDEATLQELSREIQRALLKADVPLDMVKTFTENAVKRMREE 61
tr_hit_id A9RFP1
Definition tr|A9RFP1|A9RFP1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 49
Score (bit) 82.8
E-value 8.0e-15
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK946447|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0012_K17, 5'
         (482 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RFP1|A9RFP1_PHYPA Predicted protein OS=Physcomitrella paten...    83   8e-15
tr|A9TSV5|A9TSV5_PHYPA Predicted protein (Fragment) OS=Physcomit...    79   1e-13
tr|Q38888|Q38888_ARATH OBP32pep (Fragment) OS=Arabidopsis thalia...    49   1e-04
tr|Q9CAL6|Q9CAL6_ARATH Putative uncharacterized protein F24J13.5...    49   2e-04
tr|Q8LCZ0|Q8LCZ0_ARATH Putative uncharacterized protein OS=Arabi...    49   2e-04
tr|A9SIW2|A9SIW2_PHYPA Predicted protein OS=Physcomitrella paten...    48   2e-04
tr|A9SJC0|A9SJC0_PHYPA Predicted protein OS=Physcomitrella paten...    47   5e-04
tr|Q6K2P1|Q6K2P1_ORYSJ Putative uncharacterized protein P0706E03...    47   6e-04
tr|A3BXI6|A3BXI6_ORYSJ Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|A7QNY4|A7QNY4_VITVI Chromosome chr1 scaffold_135, whole genom...    45   0.001
tr|A9SYZ5|A9SYZ5_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|Q9ZUD8|Q9ZUD8_ARATH F5O8.12 protein OS=Arabidopsis thaliana G...    39   0.098
tr|Q9LQC3|Q9LQC3_ARATH F28C11.19 OS=Arabidopsis thaliana PE=4 SV=1     39   0.098
tr|Q8LCB8|Q8LCB8_ARATH Putative uncharacterized protein OS=Arabi...    38   0.28 
tr|A9RFQ9|A9RFQ9_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.37 
tr|A8P0M0|A8P0M0_BRUMA FG-GAP repeat family protein OS=Brugia ma...    35   1.8  

>tr|A9RFP1|A9RFP1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_113132 PE=4 SV=1
          Length = 222

 Score = 82.8 bits (203), Expect = 8e-15
 Identities = 34/49 (69%), Positives = 43/49 (87%)
 Frame = +3

Query: 6   GSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHLAEM 152
           GSW+ F QV+EPAIVPPWPLNGYVRGVT +I+RE+L DLQ EC+ L+++
Sbjct: 171 GSWVNFQQVLEPAIVPPWPLNGYVRGVTERIIREMLADLQLECLRLSQV 219


>tr|A9TSV5|A9TSV5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_6718 PE=4 SV=1
          Length = 192

 Score = 78.6 bits (192), Expect = 1e-13
 Identities = 34/50 (68%), Positives = 42/50 (84%)
 Frame = +3

Query: 3   VGSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHLAEM 152
           +GSWITF QVVEP+I PPWPL+ Y+RGV+ KIVRE+L DLQ+EC  L E+
Sbjct: 143 LGSWITFQQVVEPSIKPPWPLSNYIRGVSDKIVREMLADLQQECQRLTEL 192


>tr|Q38888|Q38888_ARATH OBP32pep (Fragment) OS=Arabidopsis thaliana
           PE=2 SV=1
          Length = 255

 Score = 48.9 bits (115), Expect = 1e-04
 Identities = 20/51 (39%), Positives = 35/51 (68%)
 Frame = +3

Query: 3   VGSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHLAEMK 155
           +GS +T +Q+++PAIVPP P++ Y+RG+TAK    ++ DL  E     +++
Sbjct: 205 IGSKVTLDQLIQPAIVPPPPISWYLRGITAKTTEMLIHDLLAETARSVQLE 255


>tr|Q9CAL6|Q9CAL6_ARATH Putative uncharacterized protein F24J13.5
           (Putative uncharacterized protein At1g70480) (Putative
           uncharacterized protein At1g70480; F24J13.5)
           OS=Arabidopsis thaliana GN=At1g70480/F24J13.5 PE=2 SV=1
          Length = 320

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 20/43 (46%), Positives = 32/43 (74%)
 Frame = +3

Query: 3   VGSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRE 131
           +GS +T +Q+++PAIVPP P++ Y+RG+TAK    ++ DL  E
Sbjct: 232 IGSKVTLDQLIQPAIVPPPPISWYLRGITAKTTEMLIHDLLAE 274


>tr|Q8LCZ0|Q8LCZ0_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 320

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 20/43 (46%), Positives = 32/43 (74%)
 Frame = +3

Query: 3   VGSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRE 131
           +GS +T +Q+++PAIVPP P++ Y+RG+TAK    ++ DL  E
Sbjct: 232 IGSKVTLDQLIQPAIVPPPPISWYLRGITAKTTEMLIHDLLAE 274


>tr|A9SIW2|A9SIW2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_130447 PE=4 SV=1
          Length = 266

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 23/50 (46%), Positives = 30/50 (60%)
 Frame = +3

Query: 3   VGSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHLAEM 152
           V S ++  QVV PA+VPP P   YVRG+T +    +L DLQ E   L E+
Sbjct: 165 VASIVSLEQVVRPAVVPPPPFKSYVRGITTRTTEMLLQDLQAEGKRLREL 214


>tr|A9SJC0|A9SJC0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_185602 PE=4 SV=1
          Length = 279

 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 24/49 (48%), Positives = 29/49 (59%)
 Frame = +3

Query: 3   VGSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHLAE 149
           V S IT  QVV+PA+VPP P   YVR +T +    +L DLQ E   L E
Sbjct: 179 VASIITLQQVVQPAVVPPPPFKNYVRKITTRTTEMLLQDLQAEGKRLRE 227


>tr|Q6K2P1|Q6K2P1_ORYSJ Putative uncharacterized protein P0706E03.11
           OS=Oryza sativa subsp. japonica GN=P0706E03.11 PE=4 SV=1
          Length = 378

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 21/47 (44%), Positives = 31/47 (65%)
 Frame = +3

Query: 3   VGSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHL 143
           VGS IT +Q++EPA+VPP P + Y+RG+T +    ++ DL  E   L
Sbjct: 278 VGSSITLDQLIEPAMVPPPPFSWYLRGITTRTTEMLVNDLIAETARL 324


>tr|A3BXI6|A3BXI6_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_027758 PE=4 SV=1
          Length = 1199

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 21/47 (44%), Positives = 31/47 (65%)
 Frame = +3

Query: 3    VGSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHL 143
            VGS IT +Q++EPA+VPP P + Y+RG+T +    ++ DL  E   L
Sbjct: 1099 VGSSITLDQLIEPAMVPPPPFSWYLRGITTRTTEMLVNDLIAETARL 1145


>tr|A7QNY4|A7QNY4_VITVI Chromosome chr1 scaffold_135, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002723001
           PE=4 SV=1
          Length = 323

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 17/47 (36%), Positives = 32/47 (68%)
 Frame = +3

Query: 3   VGSWITFNQVVEPAIVPPWPLNGYVRGVTAKIVREILGDLQRECIHL 143
           +GS ++  Q+++PAIVPP P++ Y+RG+T++    ++ DL  E   +
Sbjct: 229 IGSKVSLEQLIQPAIVPPPPISWYLRGITSRTTEMLINDLLAEAARI 275