DK947972
Clone id TST38A01NGRL0002_B02
Library
Length 616
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_B02. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
GTTTAAAGGTGCAGTAAAACTTAATATGCCACAGGCTAGAGAAAATTTTGATCTGTTCAA
GGGAGCTGCTGGAAAAGCTTACCTGCGGAGTGGTTTCTCCACGAAACGACCTGATGATCC
ACATCTTAGCAACGTAAATTATCAGAGGCCTGGTGCACGTACGACAGAGGACACAACAGC
GCAAAACTTTACACCGAGTGGAATAGGTGCATCACGTCTAAAAAAGTACAATCTGGTCAC
TTCACAGACCCCACATTCTGGGGAGGTGGGTCAAGCCAGTAGATCAGATGTCCCTATCAC
ATCATTGCATGAAGATGCTGCAAGGGTCCGTATTCGTGAAAATAGTCTTGGAGACTATTG
GAATAGCTGGGTCAGACTGCTCGAGGAGCAGGATCATGGTGCTAGGATAAAGTGCAGGCA
GTTGATTGCACCGTCCGACTATCTTACAAACTTTGTAGCAGACTGTCTAGAGGTGCCCCA
AGAGCAGTATCTGTATTCCAACGAAGGAGCATCAGGTAGAGTGGATTCACAACCTCATAA
TAAAAATTCTGGCTTCCACAGAAGGTTTCCAGATGATGGCAGTTCTCCTTCCGGGATGCG
TTCAGTTAATCTCTCT
■■Homology search results ■■ -
sp_hit_id Q48E77
Definition sp|Q48E77|IF2_PSE14 Translation initiation factor IF-2 OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6)
Align length 57
Score (bit) 32.3
E-value 2.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947972|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_B02, 5'
(616 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q48E77|IF2_PSE14 Translation initiation factor IF-2 OS=Pseudo... 32 2.0
sp|Q28GQ3|OCAD1_XENTR OCIA domain-containing protein 1 OS=Xenopu... 32 3.4
sp|Q9BXI6|TB10A_HUMAN TBC1 domain family member 10A OS=Homo sapi... 31 4.5
sp|Q3KI84|IF2_PSEPF Translation initiation factor IF-2 OS=Pseudo... 31 4.5
sp|Q4KIF6|IF2_PSEF5 Translation initiation factor IF-2 OS=Pseudo... 31 4.5
sp|O96133|YB145_PLAF7 Uncharacterized protein PFB0145c OS=Plasmo... 30 7.6
sp|O89084|PDE4A_MOUSE cAMP-specific 3',5'-cyclic phosphodiestera... 30 7.6
sp|A0LIN6|PDXA_SYNFM 4-hydroxythreonine-4-phosphate dehydrogenas... 30 9.9

>sp|Q48E77|IF2_PSE14 Translation initiation factor IF-2
OS=Pseudomonas syringae pv. phaseolicola (strain 1448A /
Race 6) GN=infB PE=3 SV=1
Length = 843

Score = 32.3 bits (72), Expect = 2.0
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2

Query: 92 GFSTKRPDDPHLSNVNYQRPGART---TEDTTAQNFTPSGIGASRLKKYNLVTSQTP 253
G +R + PH ++V + P R T D + +F G G SRLKK N Q+P
Sbjct: 200 GGDGERKNAPHRASVKEKAPAPRVAPRTTDEESDSFRRGGRGKSRLKKRNAHGFQSP 256


>sp|Q28GQ3|OCAD1_XENTR OCIA domain-containing protein 1 OS=Xenopus
tropicalis GN=ociad1 PE=2 SV=1
Length = 254

Score = 31.6 bits (70), Expect = 3.4
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2

Query: 227 YNLVTSQTPHSGEVGQASRSDVPITSLHEDAARVRIRENSLGDYW 361
Y+ + S+ + E+ R+D P+ S + AAR ++ N GD W
Sbjct: 208 YDELRSRNRETYEMAVTQRADAPVRSSLDRAARKDVKTNKYGDVW 252


>sp|Q9BXI6|TB10A_HUMAN TBC1 domain family member 10A OS=Homo sapiens
GN=TBC1D10A PE=1 SV=1
Length = 508

Score = 31.2 bits (69), Expect = 4.5
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 2/100 (2%)
Frame = +2

Query: 143 QRPGARTTEDTTA--QNFTPSGIGASRLKKYNLVTSQTPHSGEVGQASRSDVPITSLHED 316
Q P A TT++ ++ + +G R+ K+ + G + +VP+ L +
Sbjct: 28 QGPDAATTDELSSLGSDSEANGFAERRIDKFGFIVGSQGAEGAL-----EEVPLEVLRQ- 81

Query: 317 AARVRIRENSLGDYWNSWVRLLEEQDHGARIKCRQLIAPS 436
RE+ D N+W + + ++ R++C++ I PS
Sbjct: 82 ------RESKWLDMLNNWDKWMAKKHKKIRLRCQKGIPPS 115


>sp|Q3KI84|IF2_PSEPF Translation initiation factor IF-2
OS=Pseudomonas fluorescens (strain Pf0-1) GN=infB PE=3
SV=1
Length = 837

Score = 31.2 bits (69), Expect = 4.5
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2

Query: 86 RSGFSTKRPDDPHLSNVNYQRPGART---TEDTTAQNFTPSGIGASRLKKYNLVTSQTP 253
R G +R + PH ++V + P R T D + F G G ++LKK N Q+P
Sbjct: 192 RRGGDGERKNAPHRASVKEKAPAPRVAPRTTDEESDGFRRGGRGKAKLKKRNAHGFQSP 250


>sp|Q4KIF6|IF2_PSEF5 Translation initiation factor IF-2
OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
GN=infB PE=3 SV=1
Length = 838

Score = 31.2 bits (69), Expect = 4.5
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2

Query: 86 RSGFSTKRPDDPHLSNVNYQRPGART---TEDTTAQNFTPSGIGASRLKKYNLVTSQTP 253
R G +R + PH ++V + P R T D + F G G ++LKK N Q+P
Sbjct: 193 RRGGDGERKNAPHRASVKEKAPAPRVAPRTTDEESDGFRRGGRGKAKLKKRNAHGFQSP 251


>sp|O96133|YB145_PLAF7 Uncharacterized protein PFB0145c OS=Plasmodium
falciparum (isolate 3D7) GN=PFB0145c PE=2 SV=1
Length = 1979

Score = 30.4 bits (67), Expect = 7.6
Identities = 16/75 (21%), Positives = 34/75 (45%)
Frame = +2

Query: 335 RENSLGDYWNSWVRLLEEQDHGARIKCRQLIAPSDYLTNFVADCLEVPQEQYLYSNEGAS 514
R+N D + +++L++ I+C I D + E+Y+ +N+G
Sbjct: 906 RDNKYSDLYEKYIKLIKSICMIINIECCDDIENEDIIRRI---------EEYINNNKGLK 956

Query: 515 GRVDSQPHNKNSGFH 559
V+ + H ++S F+
Sbjct: 957 KEVEEKEHKRHSSFN 971


>sp|O89084|PDE4A_MOUSE cAMP-specific 3',5'-cyclic phosphodiesterase
4A OS=Mus musculus GN=Pde4a PE=2 SV=2
Length = 844

Score = 30.4 bits (67), Expect = 7.6
Identities = 21/68 (30%), Positives = 30/68 (44%)
Frame = +2

Query: 146 RPGARTTEDTTAQNFTPSGIGASRLKKYNLVTSQTPHSGEVGQASRSDVPITSLHEDAAR 325
RPG RTT + +F +G G ++ TP G S++ P LH AA
Sbjct: 76 RPGLRTTRMSWPSSFHGTGTGGGSSRRLEAENGPTPSPGRSPLDSQAS-PGLMLHAGAAT 134

Query: 326 VRIRENSL 349
+ RE+ L
Sbjct: 135 SQRRESFL 142


>sp|A0LIN6|PDXA_SYNFM 4-hydroxythreonine-4-phosphate dehydrogenase
OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
MPOB) GN=pdxA PE=3 SV=1
Length = 345

Score = 30.0 bits (66), Expect = 9.9
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = +2

Query: 113 DDPHLSNVNYQRPGARTTEDTTAQNFTPSGIGASRLKKYNLVTSQTPHSGEVGQASRSDV 292
D P L NV R R T + ++F G+ A RL V PH+GE G+ R ++
Sbjct: 178 DVPALLNVEMLREVIRITAEALIRDF---GLQAPRLA----VAGLNPHAGEEGRFGREEI 230

Query: 293 PI 298
I
Sbjct: 231 EI 232


tr_hit_id B1Z3Y5
Definition tr|B1Z3Y5|B1Z3Y5_BURA4 Short-chain dehydrogenase/reductase SDR OS=Burkholderia ambifaria (strain MC40-6)
Align length 71
Score (bit) 38.5
E-value 0.32
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947972|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_B02, 5'
(616 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B1Z3Y5|B1Z3Y5_BURA4 Short-chain dehydrogenase/reductase SDR O... 39 0.32
tr|A4JSV6|A4JSV6_BURVG Short-chain dehydrogenase/reductase SDR O... 39 0.32
tr|Q39MU4|Q39MU4_BURS3 Short-chain dehydrogenase/reductase SDR O... 38 0.42
tr|Q1BJ47|Q1BJ47_BURCA Short-chain dehydrogenase/reductase SDR O... 38 0.42
tr|B1KB78|B1KB78_BURCC Short-chain dehydrogenase/reductase SDR O... 38 0.42
tr|A0KE88|A0KE88_BURCH Short-chain dehydrogenase/reductase SDR O... 38 0.42
tr|B1FIM9|B1FIM9_9BURK Short-chain dehydrogenase/reductase SDR O... 38 0.54
tr|Q2NC63|Q2NC63_ERYLH Alpha-glucosidase OS=Erythrobacter litora... 37 1.2
tr|Q0B1X1|Q0B1X1_BURCM Short-chain dehydrogenase/reductase SDR O... 37 1.2
tr|Q584T7|Q584T7_9TRYP Putative uncharacterized protein OS=Trypa... 36 1.6
tr|Q1GWR3|Q1GWR3_SPHAL Alpha-glucosidase OS=Sphingopyxis alasken... 36 2.1
tr|Q1NHK1|Q1NHK1_9SPHN Alpha-glucosidase OS=Sphingomonas sp. SKA... 35 3.5
tr|Q5CN73|Q5CN73_CRYHO Putative uncharacterized protein OS=Crypt... 34 6.0
tr|B0N5Q7|B0N5Q7_9FIRM Putative uncharacterized protein OS=Clost... 34 7.8
tr|Q5AXW1|Q5AXW1_EMENI Putative uncharacterized protein OS=Emeri... 34 7.8

>tr|B1Z3Y5|B1Z3Y5_BURA4 Short-chain dehydrogenase/reductase SDR
OS=Burkholderia ambifaria (strain MC40-6)
GN=BamMC406_6012 PE=3 SV=1
Length = 262

Score = 38.5 bits (88), Expect = 0.32
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +2

Query: 302 SLHEDAARVRIRENSLGDYWNSWVRLLEEQDHGARIKCRQLIAPSDYLTNFVADCLEVPQ 481
S+ D A RIR NS+ W +W R+++E HG R K ++ AP +L V D EV Q
Sbjct: 164 SMAMDLAADRIRVNSVSPGW-TWSRVMDELTHGDRAKTNRVAAPF-HLLGRVGDPSEVAQ 221

Query: 482 EQYLYSNEGAS 514
++ AS
Sbjct: 222 VVTFLCSDAAS 232


>tr|A4JSV6|A4JSV6_BURVG Short-chain dehydrogenase/reductase SDR
OS=Burkholderia vietnamiensis (strain G4 / LMG 22486)
GN=Bcep1808_6462 PE=3 SV=1
Length = 262

Score = 38.5 bits (88), Expect = 0.32
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +2

Query: 302 SLHEDAARVRIRENSLGDYWNSWVRLLEEQDHGARIKCRQLIAPSDYLTNFVADCLEVPQ 481
S+ D A RIR NS+ W +W R+++E HG R K ++ AP +L V D EV Q
Sbjct: 164 SMAMDLAADRIRVNSVSPGW-TWSRVMDEMTHGDRAKTDRVAAPF-HLLGRVGDPSEVAQ 221

Query: 482 EQYLYSNEGAS 514
++ AS
Sbjct: 222 VVTFLCSDAAS 232


>tr|Q39MU4|Q39MU4_BURS3 Short-chain dehydrogenase/reductase SDR
OS=Burkholderia sp. (strain 383) GN=Bcep18194_C7178 PE=3
SV=1
Length = 262

Score = 38.1 bits (87), Expect = 0.42
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +2

Query: 302 SLHEDAARVRIRENSLGDYWNSWVRLLEEQDHGARIKCRQLIAPSDYLTNFVADCLEVPQ 481
S+ D A RIR NS+ W +W R+++E HG R K ++ AP +L V D EV Q
Sbjct: 164 SMAMDLAPDRIRVNSVSPGW-TWSRVMDEMTHGDRAKTDRVAAPF-HLLGRVGDPSEVAQ 221

Query: 482 EQYLYSNEGAS 514
++ AS
Sbjct: 222 VVTFLCSDAAS 232


>tr|Q1BJ47|Q1BJ47_BURCA Short-chain dehydrogenase/reductase SDR
OS=Burkholderia cenocepacia (strain AU 1054)
GN=Bcen_5486 PE=3 SV=1
Length = 262

Score = 38.1 bits (87), Expect = 0.42
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +2

Query: 302 SLHEDAARVRIRENSLGDYWNSWVRLLEEQDHGARIKCRQLIAPSDYLTNFVADCLEVPQ 481
S+ D A RIR NS+ W +W R+++E HG R K ++ AP +L V D EV Q
Sbjct: 164 SMAMDLAPDRIRVNSVSPGW-TWSRVMDEMTHGDRAKTDRVAAPF-HLLGRVGDPSEVAQ 221

Query: 482 EQYLYSNEGAS 514
++ AS
Sbjct: 222 VVTFLCSDAAS 232


>tr|B1KB78|B1KB78_BURCC Short-chain dehydrogenase/reductase SDR
OS=Burkholderia cenocepacia (strain MC0-3)
GN=Bcenmc03_6360 PE=4 SV=1
Length = 262

Score = 38.1 bits (87), Expect = 0.42
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +2

Query: 302 SLHEDAARVRIRENSLGDYWNSWVRLLEEQDHGARIKCRQLIAPSDYLTNFVADCLEVPQ 481
S+ D A RIR NS+ W +W R+++E HG R K ++ AP +L V D EV Q
Sbjct: 164 SMAMDLAPDRIRVNSVSPGW-TWSRVMDEMTHGDRAKTDRVAAPF-HLLRRVGDPSEVAQ 221

Query: 482 EQYLYSNEGAS 514
++ AS
Sbjct: 222 VVTFLCSDAAS 232


>tr|A0KE88|A0KE88_BURCH Short-chain dehydrogenase/reductase SDR
OS=Burkholderia cenocepacia (strain HI2424)
GN=Bcen2424_6772 PE=3 SV=1
Length = 262

Score = 38.1 bits (87), Expect = 0.42
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +2

Query: 302 SLHEDAARVRIRENSLGDYWNSWVRLLEEQDHGARIKCRQLIAPSDYLTNFVADCLEVPQ 481
S+ D A RIR NS+ W +W R+++E HG R K ++ AP +L V D EV Q
Sbjct: 164 SMAMDLAPDRIRVNSVSPGW-TWSRVMDEMTHGDRAKTDRVAAPF-HLLGRVGDPSEVAQ 221

Query: 482 EQYLYSNEGAS 514
++ AS
Sbjct: 222 VVTFLCSDAAS 232


>tr|B1FIM9|B1FIM9_9BURK Short-chain dehydrogenase/reductase SDR
OS=Burkholderia ambifaria IOP40-10
GN=BamIOP4010DRAFT_3889 PE=3 SV=1
Length = 262

Score = 37.7 bits (86), Expect = 0.54
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +2

Query: 302 SLHEDAARVRIRENSLGDYWNSWVRLLEEQDHGARIKCRQLIAPSDYLTNFVADCLEVPQ 481
S+ D A RIR NS+ W +W R+++E HG R K ++ AP +L V D EV Q
Sbjct: 164 SMAMDLAADRIRVNSVSPGW-TWSRVMDELTHGDRAKTDRVAAPF-HLLGRVGDPSEVAQ 221

Query: 482 EQYLYSNEGAS 514
++ AS
Sbjct: 222 VVTFLCSDAAS 232


>tr|Q2NC63|Q2NC63_ERYLH Alpha-glucosidase OS=Erythrobacter litoralis
(strain HTCC2594) GN=ELI_03180 PE=4 SV=1
Length = 681

Score = 36.6 bits (83), Expect = 1.2
Identities = 31/122 (25%), Positives = 50/122 (40%)
Frame = +2

Query: 164 TEDTTAQNFTPSGIGASRLKKYNLVTSQTPHSGEVGQASRSDVPITSLHEDAARVRIREN 343
TE A T I A +Y + +TP +G S + P+T ED + E
Sbjct: 151 TEFVIAGEGTAWWINAGAFNRYEYIYQETPITG----VSTAHTPMTVRLEDGTHLSFHEA 206

Query: 344 SLGDYWNSWVRLLEEQDHGARIKCRQLIAPSDYLTNFVADCLEVPQEQYLYSNEGASGRV 523
+L DY W++ +E Q + R +APS V + + ++ A+G V
Sbjct: 207 ALVDYSGMWLKRIEGQ------RFRATLAPSSRGAKVVRKGAFTTPWRTIRISDDAAGLV 260

Query: 524 DS 529
+S
Sbjct: 261 ES 262


>tr|Q0B1X1|Q0B1X1_BURCM Short-chain dehydrogenase/reductase SDR
OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD)
GN=Bamb_6308 PE=3 SV=1
Length = 262

Score = 36.6 bits (83), Expect = 1.2
Identities = 25/71 (35%), Positives = 37/71 (52%)
Frame = +2

Query: 302 SLHEDAARVRIRENSLGDYWNSWVRLLEEQDHGARIKCRQLIAPSDYLTNFVADCLEVPQ 481
S+ D + RIR NS+ W +W R+++E HG R K ++ AP +L V D EV Q
Sbjct: 164 SMAMDLSADRIRVNSVSPGW-TWSRVMDELTHGDRAKTDRVAAPF-HLLGRVGDPSEVAQ 221

Query: 482 EQYLYSNEGAS 514
++ AS
Sbjct: 222 VVTFLCSDAAS 232


>tr|Q584T7|Q584T7_9TRYP Putative uncharacterized protein
OS=Trypanosoma brucei GN=Tb927.6.2190 PE=4 SV=1
Length = 287

Score = 36.2 bits (82), Expect = 1.6
Identities = 17/85 (20%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +2

Query: 305 LHEDAARVRIRENSLGDYWN--SWVRLLEEQDHGARIKCRQLIAPSDYLTNFVADCLEVP 478
+ + ++ + + L + W+ + ++ EE++ G R + R +++P L + A+ ++
Sbjct: 82 IRAETSKQKHLQRQLQEVWDRVAMAKVEEEKEEGVRRRSRYVVSPPAILHHSTAELVQEN 141

Query: 479 QEQYLYSNEGASGRVDSQPHNKNSG 553
Q+ E +SG++ + PH ++ G
Sbjct: 142 SPQHFVPAEDSSGKLSALPHVESPG 166