DK947979
Clone id TST38A01NGRL0002_B09
Library
Length 671
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_B09. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
CCAACACCAGACAGTTTCGGCATCGAGGAAGCTCTTCTTTTAGTGGGTTTTCAGGAGTCA
AGAGTGATTATCAAAGATTAGCGGGTAATTAATCTCTGCATTCCCTGCATCATCATGCAA
GGCGCAGCGCTGCTCACTAGCCCCGCTGCCACTGCTGCTGCATTGACTCCCTGTGCTGCA
TTCCTGCGCTACACCTCCACAAATGTGAGGTGTACCAGTCCCCTCCCCTTGTTTTCTTCA
AGATCTCTGCAACAGAAGCGGCGCCCACTTCTTCGTGCACAGCAACAAGATCAGGATTAT
GTTACCTACGATGCGAAGAAATCGGTTTTCCCTGCTGAGGCTTGTGAAGAGCTCGGTGGT
GAAGCATGTGAAGTTGATGGTGTTGGCCCTGAGGTGAAGGGCTCTGCCTCTGCTCCCAAG
CAACAATCTTCGTCGAAGGCTGGGAGTGGTCCGGATCGGGAGTACGTGGATTACAAGGAA
AACAAGACTGTCTTTCCTGGAGAGGCTTGCGATGACCTCGGAGGTGAGTTTTGCGAGCCA
GAGTACCAAACTGGTGTTTTCCCGGAGAAGGCAGCGGCCAAGAAGTGAAGTCAGGAACTG
TTTGCTGTTGTTTGTTCAGCTCCTTATCAACAGTTTCTTAGCCAGGCAGATTATGCTGAT
TCACATACAAG
■■Homology search results ■■ -
sp_hit_id Q03200
Definition sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa subsp. japonica
Align length 28
Score (bit) 49.3
E-value 2.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947979|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_B09, 5'
(671 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa su... 49 2e-05
sp|Q49537|VLPE_MYCHR Variant surface antigen E OS=Mycoplasma hyo... 32 3.0
sp|Q9QXG9|TINF2_MOUSE TERF1-interacting nuclear factor 2 OS=Mus ... 32 4.0
sp|Q5RCP1|CI097_PONAB Uncharacterized protein C9orf97 homolog OS... 32 4.0
sp|Q5T7W7|CI097_HUMAN Uncharacterized protein C9orf97 OS=Homo sa... 32 4.0
sp|Q9NVE5|UBP40_HUMAN Ubiquitin carboxyl-terminal hydrolase 40 O... 31 6.8
sp|O13549|VPS63_YEAST Putative uncharacterized protein VPS63 OS=... 30 8.8

>sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa
subsp. japonica GN=LIR1 PE=2 SV=1
Length = 128

Score = 49.3 bits (116), Expect = 2e-05
Identities = 20/28 (71%), Positives = 23/28 (82%)
Frame = +1

Query: 454 DREYVDYKENKTVFPGEACDDLGGEFCE 537
DR+Y+ Y E TVFP EACDDLGGEFC+
Sbjct: 99 DRDYLSYDEPTTVFPEEACDDLGGEFCK 126



Score = 36.2 bits (82), Expect = 0.16
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1

Query: 466 VDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPE 567
VDY N +VFP EACD +GGE C + ++PE
Sbjct: 50 VDYSSNISVFPMEACDLIGGEACNVQ----MYPE 79


>sp|Q49537|VLPE_MYCHR Variant surface antigen E OS=Mycoplasma
hyorhinis GN=vlpE PE=4 SV=1
Length = 243

Score = 32.0 bits (71), Expect = 3.0
Identities = 29/97 (29%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Frame = -2

Query: 658 QHNLPG*ETVD--KELNKQQQTVPDFT----SWPLPSPGKHQFG---TLARKTHLRGHRK 506
QH+ P T KE N T D S P S G+H T + H
Sbjct: 135 QHSNPSNPTTSDPKESNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNP 194

Query: 505 PLQERQSCFPCNPRTPDPDHSQPSTKIVAWEQRQSPS 395
+ Q P NP T D HS PS + Q +PS
Sbjct: 195 TTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNPS 231


>sp|Q9QXG9|TINF2_MOUSE TERF1-interacting nuclear factor 2 OS=Mus
musculus GN=Tinf2 PE=2 SV=1
Length = 341

Score = 31.6 bits (70), Expect = 4.0
Identities = 23/51 (45%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = -2

Query: 622 ELNKQQQTVPDFTSWPLPSP--GKHQFGTLARKTHLRGHR---KPLQERQS 485
E + QQT P F S PLP G HQ +L HL GHR PL +R+S
Sbjct: 206 EESPHQQTRPAFHS-PLPKAKLGPHQPASLEHPEHLAGHRFNLAPLGKRKS 255


>sp|Q5RCP1|CI097_PONAB Uncharacterized protein C9orf97 homolog
OS=Pongo abelii PE=2 SV=1
Length = 516

Score = 31.6 bits (70), Expect = 4.0
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Frame = +1

Query: 457 REYVDYKENKTVFPGEACDD-----LGGEFCEPEYQTGVF---------PEKAAAKK*SQ 594
R YV+ + +F + C D GG C PE + GVF P+K + KK
Sbjct: 221 RLYVEVMLSFPLFKDDLCKDDFKTSKGGAHCFPELRVGVFEEIVPMGISPKKISYKKPGI 280

Query: 595 ELFAVVCSAPYQQFLSQADYADSHT 669
L ++FLSQA+ S T
Sbjct: 281 HLSPGEFHKEVEKFLSQANQEQSDT 305


>sp|Q5T7W7|CI097_HUMAN Uncharacterized protein C9orf97 OS=Homo
sapiens GN=C9orf97 PE=1 SV=1
Length = 516

Score = 31.6 bits (70), Expect = 4.0
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 14/85 (16%)
Frame = +1

Query: 457 REYVDYKENKTVFPGEACDD-----LGGEFCEPEYQTGVF---------PEKAAAKK*SQ 594
R YV+ + +F + C D GG C PE + GVF P+K + KK
Sbjct: 221 RLYVEVMLSFPLFKDDLCKDDFKTSKGGAHCFPELRVGVFEEIVPMGISPKKISYKKPGI 280

Query: 595 ELFAVVCSAPYQQFLSQADYADSHT 669
L ++FLSQA+ S T
Sbjct: 281 HLSPGEFHKEVEKFLSQANQEQSDT 305


>sp|Q9NVE5|UBP40_HUMAN Ubiquitin carboxyl-terminal hydrolase 40
OS=Homo sapiens GN=USP40 PE=2 SV=3
Length = 1235

Score = 30.8 bits (68), Expect = 6.8
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2

Query: 622 ELNKQQQTVPDFTSWPLPSPGKHQFGTLARKTH---LRGHRKPLQE 494
EL Q T+P F + +PSP + T+ RK LR R+PL+E
Sbjct: 999 ELKSQAMTLPPFLEFGVPSPAHLRAWTVERKRPGRLLRTDRQPLRE 1044


>sp|O13549|VPS63_YEAST Putative uncharacterized protein VPS63
OS=Saccharomyces cerevisiae GN=VPS63 PE=5 SV=1
Length = 108

Score = 30.4 bits (67), Expect = 8.8
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -3

Query: 606 SKQFLTSLLGRCLLRENTSLVLWLAKLTSEVIASLSRKDSLVFL 475
SK + L RCL + S +LW+AK+ +++ + ++SL+FL
Sbjct: 53 SKLYSKRLPNRCLNFKTASQLLWIAKM--QIVQTKINRESLIFL 94


tr_hit_id Q3ZDJ4
Definition tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment) OS=Picea abies
Align length 44
Score (bit) 76.6
E-value 1.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK947979|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_B09, 5'
(671 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment) O... 77 1e-12
tr|A9NL55|A9NL55_PICSI Putative uncharacterized protein OS=Picea... 77 1e-12
tr|A9NPG3|A9NPG3_PICSI Putative uncharacterized protein OS=Picea... 75 3e-12
tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genom... 75 4e-12
tr|B7FGR7|B7FGR7_MEDTR Putative uncharacterized protein OS=Medic... 70 1e-10
tr|Q39636|Q39636_CUCSA CR9 protein OS=Cucumis sativus GN=CR9 PE=... 68 5e-10
tr|Q3HNF6|Q3HNF6_LOLPR Light-induced protein 1-like OS=Lolium pe... 66 2e-09
tr|B6T5G1|B6T5G1_MAIZE Light-induced protein 1-like OS=Zea mays ... 66 2e-09
tr|B4FN76|B4FN76_MAIZE Putative uncharacterized protein OS=Zea m... 66 2e-09
tr|B6SZ11|B6SZ11_MAIZE Putative uncharacterized protein OS=Zea m... 65 3e-09
tr|A8IXK8|A8IXK8_BRACM Light regulated protein-like protein OS=B... 64 7e-09
tr|B6TXS6|B6TXS6_MAIZE Light-induced protein 1-like OS=Zea mays ... 63 1e-08
tr|B6SSM8|B6SSM8_MAIZE Light-induced protein 1-like OS=Zea mays ... 63 2e-08
tr|B0L633|B0L633_CICAR GA-like protein (Fragment) OS=Cicer ariet... 62 2e-08
tr|Q41016|Q41016_PEA GA protein OS=Pisum sativum GN=GA PE=2 SV=1 62 4e-08
tr|Q8S2S6|Q8S2S6_THEHA Light regulated protein-like protein OS=T... 60 9e-08
tr|Q84N27|Q84N27_9ROSI CCR protein OS=x Citrofortunella mitis PE... 60 2e-07
tr|A7PA27|A7PA27_VITVI Chromosome chr14 scaffold_9, whole genome... 58 6e-07
tr|Q96500|Q96500_ARATH Putative uncharacterized protein (A.thali... 55 3e-06
tr|A9PJL3|A9PJL3_POPJC Putative uncharacterized protein OS=Popul... 55 3e-06
tr|A9PJH2|A9PJH2_POPJC Putative uncharacterized protein OS=Popul... 55 3e-06
tr|Q7M1K1|Q7M1K1_CITPA Ccr protein OS=Citrus paradisi PE=4 SV=1 49 2e-04
tr|Q0JRG1|Q0JRG1_ORYSJ cDNA clone:J013120E23, full insert sequen... 49 2e-04
tr|A2WJN0|A2WJN0_ORYSI Putative uncharacterized protein OS=Oryza... 49 2e-04
tr|Q8RVJ1|Q8RVJ1_PINPS Putative cytokinin-repressed protein OS=P... 48 6e-04
tr|B1Q4T3|B1Q4T3_9ROSI CCR protein OS=Bruguiera gymnorhiza PE=4 ... 35 5.6
tr|B6P787|B6P787_BRAFL Putative uncharacterized protein OS=Branc... 35 5.6
tr|B0Y6Z1|B0Y6Z1_ASPFC Putative uncharacterized protein OS=Asper... 34 7.3
tr|A4D9M3|A4D9M3_ASPFU Putative uncharacterized protein OS=Asper... 34 9.5

>tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment)
OS=Picea abies GN=LIR PE=2 SV=1
Length = 117

Score = 76.6 bits (187), Expect = 1e-12
Identities = 35/44 (79%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Frame = +1

Query: 454 DREYVDY-KENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAAK 582
DREYV+Y E KTVFPGEACDDLGGEFCEPEYQ+GV+ EK AK
Sbjct: 74 DREYVEYASEQKTVFPGEACDDLGGEFCEPEYQSGVYKEKEPAK 117


>tr|A9NL55|A9NL55_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 143

Score = 76.6 bits (187), Expect = 1e-12
Identities = 35/44 (79%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Frame = +1

Query: 454 DREYVDY-KENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAAK 582
DREYV+Y E KTVFPGEACDDLGGEFCEPEYQ+GV+ EK AK
Sbjct: 100 DREYVEYASEQKTVFPGEACDDLGGEFCEPEYQSGVYKEKEPAK 143


>tr|A9NPG3|A9NPG3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 143

Score = 75.5 bits (184), Expect = 3e-12
Identities = 35/44 (79%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Frame = +1

Query: 454 DREYVDY-KENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAAK 582
DREYV+Y E KTVFPGEACDDLGGEFCEPEYQ+GV+ EK AK
Sbjct: 100 DREYVEYASELKTVFPGEACDDLGGEFCEPEYQSGVYKEKEPAK 143


>tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00006187001
PE=4 SV=1
Length = 139

Score = 75.1 bits (183), Expect = 4e-12
Identities = 32/39 (82%), Positives = 34/39 (87%)
Frame = +1

Query: 454 DREYVDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPEK 570
DREY++Y KTVFPGEACDDLGGEFCEPEYQ GVF EK
Sbjct: 101 DREYLEYNSPKTVFPGEACDDLGGEFCEPEYQEGVFQEK 139


>tr|B7FGR7|B7FGR7_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 144

Score = 70.1 bits (170), Expect = 1e-10
Identities = 44/127 (34%), Positives = 60/127 (47%), Gaps = 1/127 (0%)
Frame = +1

Query: 184 LRYTSTNVRCTSPLPLFSSRSLQQKRRPL-LRAQQQDQDYVTYDAKKSVFPXXXXXXXXX 360
+ + +TN+ + P L +SRS + + + D V Y++ SVFP
Sbjct: 21 ISHLATNL--SFPTKLIASRSSPPRYTAIKVVTDNSDPSTVDYNSAFSVFPAEACETVGG 78

Query: 361 XXXXVDGVGPEVXXXXXXXXXXXXXXXXXXXDREYVDYKENKTVFPGEACDDLGGEFCEP 540
D + PEV +REY+DY E KTVF EACDDLGG FCEP
Sbjct: 79 DACLAD-MNPEVKLQPEARNDTPKTAASGNIEREYLDYNEPKTVFQAEACDDLGGAFCEP 137

Query: 541 EYQTGVF 561
+YQ GV+
Sbjct: 138 DYQKGVY 144


>tr|Q39636|Q39636_CUCSA CR9 protein OS=Cucumis sativus GN=CR9 PE=2
SV=1
Length = 137

Score = 68.2 bits (165), Expect = 5e-10
Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Frame = +1

Query: 238 SRSLQQKRRPLLRAQQ----QDQDYVTYDAKKSVFPXXXXXXXXXXXXXVDGVGPEVXXX 405
+RS+ ++ + L+A+ QD V Y + SVFP V+ + PEV
Sbjct: 30 TRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVE-MYPEVKLK 88

Query: 406 XXXXXXXXXXXXXXXXDREYVDYKENKTVFPGEACDDLGGEFCEPEYQTGVF 561
+REY+ Y KTVFP EACDDLGGEFC+PEYQ GV+
Sbjct: 89 PEAKKGNSVTEPV---EREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY 137


>tr|Q3HNF6|Q3HNF6_LOLPR Light-induced protein 1-like OS=Lolium
perenne GN=LIR1 PE=2 SV=1
Length = 136

Score = 66.2 bits (160), Expect = 2e-09
Identities = 29/38 (76%), Positives = 31/38 (81%)
Frame = +1

Query: 454 DREYVDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPE 567
+REY+ Y E KTVFPGEACDDLGGEFCE YQTGV E
Sbjct: 99 EREYLSYDEAKTVFPGEACDDLGGEFCEAPYQTGVSKE 136



Score = 33.9 bits (76), Expect = 9.5
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +1

Query: 466 VDYKENKTVFPGEACDDLGGEFCE-----PEYQTGVFPEKAAAKK 585
VDY + +VFP EACD +G E CE PE + AAA K
Sbjct: 50 VDYSSDVSVFPMEACDLVGVEACEAAEMYPETKLSDSASAAAASK 94


>tr|B6T5G1|B6T5G1_MAIZE Light-induced protein 1-like OS=Zea mays
PE=2 SV=1
Length = 138

Score = 65.9 bits (159), Expect = 2e-09
Identities = 30/42 (71%), Positives = 32/42 (76%)
Frame = +1

Query: 454 DREYVDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAA 579
DR+Y+ Y E KTVFPGEACDDLGGEFCE YQ GV E A A
Sbjct: 97 DRDYLSYDEPKTVFPGEACDDLGGEFCEAPYQDGVSKELAHA 138



Score = 36.2 bits (82), Expect = 1.9
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1

Query: 466 VDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAA 579
+DY + +VFP EACD LGG+ C P AAA
Sbjct: 50 IDYSSSVSVFPMEACDLLGGDACNGPMXPEAKPXSAAA 87


>tr|B4FN76|B4FN76_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 138

Score = 65.9 bits (159), Expect = 2e-09
Identities = 30/42 (71%), Positives = 32/42 (76%)
Frame = +1

Query: 454 DREYVDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAA 579
DR+Y+ Y E KTVFPGEACDDLGGEFCE YQ GV E A A
Sbjct: 97 DRDYLSYDEPKTVFPGEACDDLGGEFCEAPYQDGVSKELAHA 138



Score = 35.4 bits (80), Expect = 3.3
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = +1

Query: 466 VDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAA 579
+DY + +VFP EACD LGG+ C P AAA
Sbjct: 50 IDYSSSVSVFPMEACDLLGGDACNGPMFPEAKPASAAA 87


>tr|B6SZ11|B6SZ11_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 125

Score = 65.5 bits (158), Expect = 3e-09
Identities = 30/42 (71%), Positives = 32/42 (76%)
Frame = +1

Query: 454 DREYVDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAA 579
DR+Y+ Y E KTVFPGEACDDLGGEFCE YQ GV E A A
Sbjct: 84 DRDYLSYDEPKTVFPGEACDDLGGEFCEAPYQDGVSRELAHA 125