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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947986
Clone id TST38A01NGRL0002_B17
Library
Length 699
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_B17. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGAGGAGGACGAGAATTCAGTTGCTGAAGAGACACTGTTCTTCGGCCTGCAGAAGCTCTT
GTCGCTCAACGATAGCACCCACTCATTCAGCTACAAGGCGGCGGGTGGAAATTTGCCGGG
CTTCGACGTCGATGGGCTGATTGATTACCACAGCTACTTCCAGCTGAAGGAACACCCCCA
GCACAAGGAAAAATCTGTGATCCAGTGGCGCTACACCTCCAAGCCCTCGCCCTACCTGTC
AAAGACCGAGGCGGACGAGGTCTGTTTCAGTCTTTACGACACGGCCGTCGGGGATCTCCG
CGCCCGCCTCGCTAGCCCACTCAAGACTGGTATTGCCCACCGCCGCTCTCCGCCCACCGA
GCCCGTCGCCTTCCTCAAGGCAGCCTTTTCTGAGGTCTGAGGGCCATCTCACAACCAGAT
GGGCTAATTTGGGCATTTTGGGAATTTCGACAAGTTAGAGGGCTATTTTGGTAATTTTTC
CTTCTGTTTAGTGCTTGATATACTCGTCCCTCAGCTTCTTCGGTTAAGATGTCCACTTTT
AGCTTCTTTGTCAAACTACGTCATGTCAAAGTCCGCTCGAGTGTGGCTGTACTTGCGTCA
TCTTGATAGTCAATAAAAGTTTCTTTTGTAACATCGATGTATTTTTGGTAGTTGGTGGAA
CCTTGTACTTGATATCTATGCCTTGCTCTAGTTTCTAGC
■■Homology search results ■■ -
sp_hit_id A1S3Z1
Definition sp|A1S3Z1|RIMM_SHEAM Ribosome maturation factor rimM OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Align length 32
Score (bit) 33.5
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947986|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_B17, 5'
         (699 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1S3Z1|RIMM_SHEAM Ribosome maturation factor rimM OS=Shewanel...    33   1.1  
sp|Q0HSK2|RIMM_SHESR Ribosome maturation factor rimM OS=Shewanel...    32   3.3  
sp|Q0HGA9|RIMM_SHESM Ribosome maturation factor rimM OS=Shewanel...    32   3.3  
sp|A0KZM2|RIMM_SHESA Ribosome maturation factor rimM OS=Shewanel...    32   3.3  
sp|Q8EH71|RIMM_SHEON Ribosome maturation factor rimM OS=Shewanel...    32   3.3  
sp|Q9VQD2|CP391_DROME Probable cytochrome P450 309a1 OS=Drosophi...    32   4.3  
sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein ...    31   5.6  
sp|P0C8I0|RIR2_ASFK5 Ribonucleoside-diphosphate reductase small ...    31   7.3  
sp|Q9VFJ0|CP131_DROME Probable cytochrome P450 313a1 OS=Drosophi...    31   7.3  
sp|Q96LP4|YS017_HUMAN Putative uncharacterized protein FLJ25328 ...    30   9.5  
sp|Q7M962|NAPA_WOLSU Periplasmic nitrate reductase OS=Wolinella ...    30   9.5  
sp|Q8K071|TM221_MOUSE Transmembrane protein 221 OS=Mus musculus ...    30   9.6  

>sp|A1S3Z1|RIMM_SHEAM Ribosome maturation factor rimM OS=Shewanella
           amazonensis (strain ATCC BAA-1098 / SB2B) GN=rimM PE=3
           SV=1
          Length = 176

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 128 VDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSK 223
           V+G+ DY  +F LKEH + +E  V QWR+  K
Sbjct: 32  VEGIFDYSPWF-LKEHGEWREVKVSQWRFHGK 62


>sp|Q0HSK2|RIMM_SHESR Ribosome maturation factor rimM OS=Shewanella
           sp. (strain MR-7) GN=rimM PE=3 SV=1
          Length = 176

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 128 VDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSK 223
           V+G+ DY  +  +KE+ + +E  VIQWRY  K
Sbjct: 32  VEGIFDYSPWL-IKENGEWREVKVIQWRYQGK 62


>sp|Q0HGA9|RIMM_SHESM Ribosome maturation factor rimM OS=Shewanella
           sp. (strain MR-4) GN=rimM PE=3 SV=1
          Length = 176

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 128 VDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSK 223
           V+G+ DY  +  +KE+ + +E  VIQWRY  K
Sbjct: 32  VEGIFDYSPWL-IKENGEWREVKVIQWRYQGK 62


>sp|A0KZM2|RIMM_SHESA Ribosome maturation factor rimM OS=Shewanella
           sp. (strain ANA-3) GN=rimM PE=3 SV=1
          Length = 176

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 128 VDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSK 223
           V+G+ DY  +  +KE+ + +E  VIQWRY  K
Sbjct: 32  VEGIFDYSPWL-IKENGEWREVKVIQWRYQGK 62


>sp|Q8EH71|RIMM_SHEON Ribosome maturation factor rimM OS=Shewanella
           oneidensis GN=rimM PE=3 SV=1
          Length = 177

 Score = 32.0 bits (71), Expect = 3.3
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 128 VDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSK 223
           V+G+ DY  +  +KE+ + +E  VIQWRY  K
Sbjct: 33  VEGIFDYSPWL-IKENGEWREVKVIQWRYQGK 63


>sp|Q9VQD2|CP391_DROME Probable cytochrome P450 309a1 OS=Drosophila
           melanogaster GN=Cyp309a1 PE=1 SV=3
          Length = 529

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 47  LQKLLSLNDSTHSFSYKAAGGNLPGFDVDGLIDYHSYFQLKEHPQHKEK 193
           L +L    +S H     A   +L GF+  G + YH  + L EH + +EK
Sbjct: 309 LIQLQQRGNSIHDSVGHALTVHLDGFETSGAVLYHMLYSLSEHHEEQEK 357


>sp|Q8BTI8|SRRM2_MOUSE Serine/arginine repetitive matrix protein 2
           OS=Mus musculus GN=Srrm2 PE=1 SV=2
          Length = 2703

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 1/129 (0%)
 Frame = -2

Query: 485 RRKNYQNSPLTCRNSQNAQISPSGCEMALRPQKRLP*GRRRARWAEXXXXXXXXXXXXXX 306
           RR++   SP+  R+   +Q   SG   +  P +R   GR R+R                 
Sbjct: 619 RRRSRTRSPVRRRSRSRSQARRSGRSRSRTPARRS--GRSRSRTPARRGRSRSRTPARRS 676

Query: 305 XXGDPRRPCRKD*NRPRPPRSLTGRARAWRCSATGSQIFPCAGGVPSAGSSCGNQS-AHR 129
                R P R+  +R R P     R+R+           P   G   + S   N+S   +
Sbjct: 677 ARSRSRTPARRGRSRSRTPARRRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQ 736

Query: 128 RRSPANFHP 102
           RRS +N  P
Sbjct: 737 RRSRSNSSP 745


>sp|P0C8I0|RIR2_ASFK5 Ribonucleoside-diphosphate reductase small
           chain OS=African swine fever virus (isolate
           Pig/Kenya/KEN-50/1950) GN=Ken-056 PE=3 SV=1
          Length = 327

 Score = 30.8 bits (68), Expect = 7.3
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +2

Query: 14  NSVAEETLFFG-LQKLLSLNDSTHSFSYKAAGGNLPGFDVDGLIDYHSYF 160
           N++ EE +    L++ + L D   S+++  A G++PGF  + L  Y  YF
Sbjct: 214 NNIPEEKIIHKILKEAVELVDEFISYAFDKARGSVPGFSKEMLFQYIRYF 263


>sp|Q9VFJ0|CP131_DROME Probable cytochrome P450 313a1 OS=Drosophila
           melanogaster GN=Cyp313a1 PE=2 SV=2
          Length = 492

 Score = 30.8 bits (68), Expect = 7.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 119 GFDVDGLIDYHSYFQLKEHPQHKE 190
           G+D   L  YH+ F L  HP+H+E
Sbjct: 298 GYDTSALTVYHALFLLANHPEHQE 321


>sp|Q96LP4|YS017_HUMAN Putative uncharacterized protein FLJ25328
           OS=Homo sapiens PE=2 SV=1
          Length = 205

 Score = 30.4 bits (67), Expect = 9.5
 Identities = 18/47 (38%), Positives = 20/47 (42%)
 Frame = -2

Query: 212 SATGSQIFPCAGGVPSAGSSCGNQSAHRRRSPANFHPPPCS*MSGCY 72
           SA G  I P  GG P   S     S   R SP+   P PCS   G +
Sbjct: 119 SAGGRGIAPTPGGQPCGSSRKSGSSCAWRWSPSGGSPWPCSRAGGAW 165
tr_hit_id A9S6R2
Definition tr|A9S6R2|A9S6R2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 60
Score (bit) 35.8
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947986|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_B17, 5'
         (699 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S6R2|A9S6R2_PHYPA Predicted protein OS=Physcomitrella paten...    36   2.7  
tr|A4SAI8|A4SAI8_OSTLU Predicted protein (Fragment) OS=Ostreococ...    35   3.5  

>tr|A9S6R2|A9S6R2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_163145 PE=4 SV=1
          Length = 279

 Score = 35.8 bits (81), Expect = 2.7
 Identities = 21/60 (35%), Positives = 34/60 (56%)
 Frame = +2

Query: 50  QKLLSLNDSTHSFSYKAAGGNLPGFDVDGLIDYHSYFQLKEHPQHKEKSVIQWRYTSKPS 229
           QKL+ +N S H FSY++   N  G D    + Y+S FQ K+  +   K++++W +   PS
Sbjct: 72  QKLVVINPSEHVFSYESLENN-TGVD----LGYYSAFQAKQ--EEDGKTLVRWAFRFSPS 124


>tr|A4SAI8|A4SAI8_OSTLU Predicted protein (Fragment) OS=Ostreococcus
           lucimarinus (strain CCE9901) GN=OSTLU_94026 PE=4 SV=1
          Length = 110

 Score = 35.4 bits (80), Expect = 3.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 164 LKEHPQHKEKSVIQWRYTSKPSPYLSKTEADEVCF 268
           L E+ QHK+   ++WRY  +P    ++TEA   C+
Sbjct: 10  LSEYEQHKDYETLKWRYVKRPGAQAARTEAWYGCY 44