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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK947996
Clone id TST38A01NGRL0002_C04
Library
Length 712
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_C04. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GCAGAGGCTACCAAACCCTAGGCTAAGCTTTTCTCTGCATCAGAAACTGCCTTCTTCTCC
ATGGATCACAAGGTGCACCCCATGCCCCATCCTTCCGCCCCGCCCGCCCACTCTCGACAT
TCCTCCCTTGGCACGCAGAGCACCGCAAGCTCCGTCGCCGTCCAAATGCCCGACGATCAC
GTCCTCCGCAAAGAGCAGGAACGGATCTTGATGCAAGACTTCGGCAGCGATGGCATGCAG
CAGAAAGACTTCGTCTACAAGATGCCAGAGCCTCTGCCCCCGGGTCATCCGAGCGTGCGA
GCCGCAAGGCGGCGAGAGCGGCACGGATGCTGCTGCGGCCGCTCCTGCTGCTGCTGTTTG
GGCATTCTTTGCTCCATCTTTGCCGCCATAGTCATCATATTGGGAATCACCGCCCTCATC
CTCTACTTGGTGCTGCAGCCCAAAGCGCCCGATTTCTCCGTCTCAGACGCCACCATCACC
TCCTTCAATCTCTCCTCGCAGCCTCTCTCTGCTTCAAATGCCATCGCCGACGCCAATCTG
TACCTCAACGCAGACGTTACCTTCAACGTGAGCGCGCAAAATCCAAACAAGAAAATTGGC
ATCTACTATGATGCAGTGGATGTGACGCTCTTCTACGAGGACCAAAATATAGGCGAGGGT
TCAATCCCTGCCTTCTACCAAGGCCACCAAAACACTACCCTCCTTCTCTTGC
■■Homology search results ■■ -
sp_hit_id Q9C615
Definition sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana
Align length 84
Score (bit) 54.7
E-value 5.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947996|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_C04, 5'
         (712 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thalia...    55   5e-07
sp|Q0WW40|FBK5_ARATH F-box/Kelch-repeat protein At1g16250 OS=Ara...    31   7.6  
sp|A2A5X5|KR10D_MOUSE Putative keratin-associated protein 10-lik...    31   7.6  
sp|Q9Z7Z5|OMCA_CHLPN Small cysteine-rich outer membrane protein ...    30   9.9  

>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana
           GN=SYP24 PE=3 SV=1
          Length = 416

 Score = 54.7 bits (130), Expect = 5e-07
 Identities = 30/84 (35%), Positives = 44/84 (52%)
 Frame = +1

Query: 454 FSVSDATITSFNLSSQPLSASNAIADANLYLNADVTFNVSAQNPNKKIGIYYDAVDVTLF 633
           F V DA +T F+L S            N  L   ++ N+S +N    IGI+YD  + T++
Sbjct: 9   FQVYDAELTHFDLES------------NNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVY 56

Query: 634 YEDQNIGEGSIPAFYQGHQNTTLL 705
           Y +Q +G   +P FY G +NT LL
Sbjct: 57  YMNQRLGAVPMPLFYLGSKNTMLL 80


>sp|Q0WW40|FBK5_ARATH F-box/Kelch-repeat protein At1g16250
           OS=Arabidopsis thaliana GN=At1g16250 PE=2 SV=1
          Length = 383

 Score = 30.8 bits (68), Expect = 7.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 6   GYQTLG*AFLCIRNCLLLHGSQGAPHAPSFRPARPLST 119
           G+   G A +C+ NCLL+ G   AP   SF   +P+ T
Sbjct: 95  GWHHSGFACVCVSNCLLVIGGCYAPSVSSFPHQKPVVT 132


>sp|A2A5X5|KR10D_MOUSE Putative keratin-associated protein 10-like
           ENSP00000375147 homolog OS=Mus musculus PE=3 SV=1
          Length = 502

 Score = 30.8 bits (68), Expect = 7.6
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 143 PQAPSPSKCPTITSSAKSRNGS*CKTS-AAMACSRKTSSTRCQ-SLCPRVIRACEP 304
           P  P+PS CP++ S+A S     C+TS     CS    ++ CQ S C  ++  CEP
Sbjct: 215 PVCPTPSCCPSVCSAASSCQPVGCETSPCEPPCS---EASACQPSACMALV--CEP 265


>sp|Q9Z7Z5|OMCA_CHLPN Small cysteine-rich outer membrane protein
           omcA OS=Chlamydia pneumoniae GN=omcA PE=2 SV=1
          Length = 90

 Score = 30.4 bits (67), Expect = 9.9
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 143 PQAPSP-SKCPTITSSAKSRNGS*CKTSAAMACSRKTSSTRCQSLCPRVIRACEPQG 310
           P APS  + C  I    +S  G+ C  S   +CS    ST C S  P+V     P G
Sbjct: 31  PCAPSSCNPCEVIRKKERSCGGNACG-SYVPSCSNPCGSTECNSQSPQVKGCTSPDG 86
tr_hit_id A9NNJ0
Definition tr|A9NNJ0|A9NNJ0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 106
Score (bit) 92.8
E-value 2.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK947996|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_C04, 5'
         (712 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NNJ0|A9NNJ0_PICSI Putative uncharacterized protein OS=Picea...    93   2e-17
tr|B1Q4T2|B1Q4T2_9ROSI Harpin-induced protein OS=Bruguiera gymno...    92   3e-17
tr|Q6L7J8|Q6L7J8_TOBAC Harpin inducing protein 1-like 9 OS=Nicot...    92   3e-17
tr|A9NKZ0|A9NKZ0_PICSI Putative uncharacterized protein OS=Picea...    89   2e-16
tr|Q9SRN1|Q9SRN1_ARATH T19F11.5 protein (At3g11650) OS=Arabidops...    89   4e-16
tr|Q9LKQ3|Q9LKQ3_ARATH NDR1/HIN1-Like protein 2 OS=Arabidopsis t...    89   4e-16
tr|Q75QH3|Q75QH3_CAPCH Hin1 like protein OS=Capsicum chinense GN...    89   4e-16
tr|Q6RY60|Q6RY60_SOLTU Hin1-like protein (Fragment) OS=Solanum t...    88   5e-16
tr|B0ZC11|B0ZC11_CASGL Hairpin-inducing protein OS=Casuarina gla...    88   5e-16
tr|Q8H1B5|Q8H1B5_SOLTU Hin1-like protein OS=Solanum tuberosum PE...    88   6e-16
tr|Q32ZJ1|Q32ZJ1_SOLTU HIN1-like protein (Fragment) OS=Solanum t...    88   6e-16
tr|Q9M663|Q9M663_TOBAC Harpin inducing protein (Hin1) OS=Nicotia...    87   1e-15
tr|P93353|P93353_TOBAC Hin1 protein OS=Nicotiana tabacum GN=hin1...    87   1e-15
tr|Q6L7J7|Q6L7J7_TOBAC Harpin inducing protein 1-like 18 OS=Nico...    86   2e-15
tr|A9NWB5|A9NWB5_PICSI Putative uncharacterized protein OS=Picea...    86   2e-15
tr|A7PTL1|A7PTL1_VITVI Chromosome undetermined scaffold_30, whol...    86   2e-15
tr|A9S624|A9S624_PHYPA Predicted protein OS=Physcomitrella paten...    86   2e-15
tr|A9P136|A9P136_PICSI Putative uncharacterized protein OS=Picea...    85   5e-15
tr|Q9FNH6|Q9FNH6_ARATH Harpin-induced protein-like OS=Arabidopsi...    84   7e-15
tr|Q94K35|Q94K35_ARATH Putative harpin-induced protein (Fragment...    84   7e-15
tr|B0ZVZ0|B0ZVZ0_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    84   7e-15
tr|B0ZVY9|B0ZVY9_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    84   7e-15
tr|B0ZVS7|B0ZVS7_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    84   7e-15
tr|B0ZVS1|B0ZVS1_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    84   7e-15
tr|B0ZVQ2|B0ZVQ2_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    84   7e-15
tr|B0ZVQ1|B0ZVQ1_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    84   7e-15
tr|B0ZVP9|B0ZVP9_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    84   7e-15
tr|B0ZVP8|B0ZVP8_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    84   7e-15
tr|A7PAX7|A7PAX7_VITVI Chromosome chr16 scaffold_10, whole genom...    84   7e-15
tr|B0ZVQ4|B0ZVQ4_ARATH NHL3 (Fragment) OS=Arabidopsis thaliana G...    84   9e-15

>tr|A9NNJ0|A9NNJ0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 244

 Score = 92.8 bits (229), Expect = 2e-17
 Identities = 45/106 (42%), Positives = 63/106 (59%)
 Frame = +1

Query: 388 IVIILGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYLNADVTFN 567
           + +I GI  LI +L L+P+ P F V + T++  N+             AN  LNA + FN
Sbjct: 72  LAVIAGIGILITWLALRPQRPKFHVENVTVSQLNV-------------ANSELNATMQFN 118

Query: 568 VSAQNPNKKIGIYYDAVDVTLFYEDQNIGEGSIPAFYQGHQNTTLL 705
           +S +NPNKKIGIYYD++     Y  + IG   +P FYQGH+NTT+L
Sbjct: 119 ISVRNPNKKIGIYYDSIVARAIYRREKIGSNQLPVFYQGHKNTTVL 164


>tr|B1Q4T2|B1Q4T2_9ROSI Harpin-induced protein OS=Bruguiera
           gymnorhiza PE=2 SV=1
          Length = 200

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 44/105 (41%), Positives = 65/105 (61%)
 Frame = +1

Query: 391 VIILGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYLNADVTFNV 570
           V+I+GI  L+++LVL+P    F V+DAT+T FN++            AN  L  ++  N+
Sbjct: 50  VVIIGIAILVIWLVLRPNKIKFHVTDATLTQFNIT------------ANNTLQYNLALNL 97

Query: 571 SAQNPNKKIGIYYDAVDVTLFYEDQNIGEGSIPAFYQGHQNTTLL 705
           + +NPNK+IGIYYD +D   FYE    G   +  FYQGH+NT++L
Sbjct: 98  TVRNPNKRIGIYYDKIDAAAFYEGNRFGHALLTPFYQGHKNTSVL 142


>tr|Q6L7J8|Q6L7J8_TOBAC Harpin inducing protein 1-like 9
           OS=Nicotiana tabacum GN=hin9 PE=2 SV=1
          Length = 229

 Score = 92.0 bits (227), Expect = 3e-17
 Identities = 43/109 (39%), Positives = 69/109 (63%)
 Frame = +1

Query: 379 FAAIVIILGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYLNADV 558
           F  I++I+G+ AL+L+LVL+P    F V+DAT+T F+LS+            N  +N D+
Sbjct: 49  FFTILVIIGVAALVLWLVLRPNKVKFYVTDATLTQFDLST-----------TNNTINYDL 97

Query: 559 TFNVSAQNPNKKIGIYYDAVDVTLFYEDQNIGEGSIPAFYQGHQNTTLL 705
             N++ +NPNK+IGIYYD+++    Y+ +     ++  FYQGH+NT+ L
Sbjct: 98  ALNMTIRNPNKRIGIYYDSIEARAMYQGERFASQNLEPFYQGHKNTSSL 146


>tr|A9NKZ0|A9NKZ0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 205

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 39/106 (36%), Positives = 64/106 (60%)
 Frame = +1

Query: 388 IVIILGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYLNADVTFN 567
           I++++G+  LI +L L+P+ P + + D  ++ F ++   L            + A + FN
Sbjct: 31  IIVLVGLAVLITWLALKPEKPKYYLEDGAVSQFKINHDGL------------VTAKLLFN 78

Query: 568 VSAQNPNKKIGIYYDAVDVTLFYEDQNIGEGSIPAFYQGHQNTTLL 705
           ++ +NPNKK+ IYYD +D  L Y+D+ I   SIP F+QGH+NTT L
Sbjct: 79  ITTRNPNKKVAIYYDKIDALLLYDDEEIAWASIPPFFQGHKNTTFL 124


>tr|Q9SRN1|Q9SRN1_ARATH T19F11.5 protein (At3g11650) OS=Arabidopsis
           thaliana GN=At3g11650 PE=2 SV=1
          Length = 240

 Score = 88.6 bits (218), Expect = 4e-16
 Identities = 41/108 (37%), Positives = 68/108 (62%)
 Frame = +1

Query: 385 AIVIILGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYLNADVTF 564
           A+ +ILG+ ALIL+L+ +P A  F V+DA +  F+             + NL+ + D+ F
Sbjct: 61  AVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDP----------NNNLHYSLDLNF 110

Query: 565 NVSAQNPNKKIGIYYDAVDVTLFYEDQNIGEGSIPAFYQGHQNTTLLL 708
            +  +NPN+++G+YYD   V+ +Y DQ  G  ++ +FYQGH+NTT++L
Sbjct: 111 TI--RNPNQRVGVYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVIL 156


>tr|Q9LKQ3|Q9LKQ3_ARATH NDR1/HIN1-Like protein 2 OS=Arabidopsis
           thaliana GN=NHL2 PE=2 SV=1
          Length = 240

 Score = 88.6 bits (218), Expect = 4e-16
 Identities = 41/108 (37%), Positives = 68/108 (62%)
 Frame = +1

Query: 385 AIVIILGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYLNADVTF 564
           A+ +ILG+ ALIL+L+ +P A  F V+DA +  F+             + NL+ + D+ F
Sbjct: 61  AVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDP----------NNNLHYSLDLNF 110

Query: 565 NVSAQNPNKKIGIYYDAVDVTLFYEDQNIGEGSIPAFYQGHQNTTLLL 708
            +  +NPN+++G+YYD   V+ +Y DQ  G  ++ +FYQGH+NTT++L
Sbjct: 111 TI--RNPNQRVGVYYDEFSVSGYYGDQRFGSANVSSFYQGHKNTTVIL 156


>tr|Q75QH3|Q75QH3_CAPCH Hin1 like protein OS=Capsicum chinense
           GN=HIN1-Cc PE=2 SV=1
          Length = 228

 Score = 88.6 bits (218), Expect = 4e-16
 Identities = 44/106 (41%), Positives = 68/106 (64%)
 Frame = +1

Query: 388 IVIILGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYLNADVTFN 567
           I+I+LG+ AL+L+LVL+P    F V+DAT+T F+LS+           AN  L  D+  N
Sbjct: 52  ILIVLGVIALVLWLVLRPNKVKFYVTDATLTQFDLST-----------ANNTLYYDLALN 100

Query: 568 VSAQNPNKKIGIYYDAVDVTLFYEDQNIGEGSIPAFYQGHQNTTLL 705
           ++ +NPNK+IGIYYD+++    Y+ +     ++  FYQGH+NT+ L
Sbjct: 101 MTIRNPNKRIGIYYDSIEARGMYKGERFASQNLEPFYQGHKNTSSL 146


>tr|Q6RY60|Q6RY60_SOLTU Hin1-like protein (Fragment) OS=Solanum
           tuberosum PE=2 SV=1
          Length = 187

 Score = 88.2 bits (217), Expect = 5e-16
 Identities = 43/106 (40%), Positives = 67/106 (63%)
 Frame = +1

Query: 388 IVIILGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYLNADVTFN 567
           ++I LG+ AL+L+LVL+P    F V+DAT+T F+LS+           AN  L  D+  N
Sbjct: 52  LLIALGVIALVLWLVLRPNKVKFYVTDATLTQFDLST-----------ANNTLYYDLALN 100

Query: 568 VSAQNPNKKIGIYYDAVDVTLFYEDQNIGEGSIPAFYQGHQNTTLL 705
           ++ +NPNK++GIYYD+++    Y+ Q     ++  FYQGH+NT+ L
Sbjct: 101 MTIRNPNKRVGIYYDSIEARAMYQGQRFASHNLEPFYQGHKNTSNL 146


>tr|B0ZC11|B0ZC11_CASGL Hairpin-inducing protein OS=Casuarina glauca
           PE=2 SV=1
          Length = 225

 Score = 88.2 bits (217), Expect = 5e-16
 Identities = 41/107 (38%), Positives = 65/107 (60%)
 Frame = +1

Query: 385 AIVIILGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYLNADVTF 564
           ++++ILG+ ALI +L+ +P + +F V+DAT+T F+ S             N  L  ++  
Sbjct: 50  SVIVILGLAALIFWLIFRPTSINFHVTDATLTQFDFSD------------NNTLQYNLAL 97

Query: 565 NVSAQNPNKKIGIYYDAVDVTLFYEDQNIGEGSIPAFYQGHQNTTLL 705
           NVS +N N+KIG+YYD ++   +YEDQ     S+  FYQGH+ T+ L
Sbjct: 98  NVSVRNSNRKIGVYYDTIEARAYYEDQRFATDSLTPFYQGHKTTSTL 144


>tr|Q8H1B5|Q8H1B5_SOLTU Hin1-like protein OS=Solanum tuberosum PE=2
           SV=1
          Length = 225

 Score = 87.8 bits (216), Expect = 6e-16
 Identities = 43/106 (40%), Positives = 67/106 (63%)
 Frame = +1

Query: 388 IVIILGITALILYLVLQPKAPDFSVSDATITSFNLSSQPLSASNAIADANLYLNADVTFN 567
           I+I+LG+ AL+L+LVL+P   +F V+DAT+T F+ S+            N  L  D+  N
Sbjct: 50  ILIVLGVIALVLWLVLRPNKVNFYVTDATLTQFDYST-----------TNNTLYYDLALN 98

Query: 568 VSAQNPNKKIGIYYDAVDVTLFYEDQNIGEGSIPAFYQGHQNTTLL 705
           ++ +NPNK+IGIYYD+++    Y+ Q     ++  FYQGH+NT+ L
Sbjct: 99  MTIRNPNKRIGIYYDSIEARGMYQGQRFASQNLERFYQGHKNTSYL 144