DK948001 |
Clone id |
TST38A01NGRL0002_C09 |
Library |
TST38 |
Length |
652 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_C09. 5' end sequence. |
Accession |
DK948001 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL496Contig1 |
Sequence |
CAGGCACTAAATTTACGAAGATTTGGCGTATGTGTAACAATGGCTCCCTTCCTTGGCCTC AAAACACCCAGCTTTTGCACATTGGTGGAGATGTTTTGAGCTTGCAGGATTCCGTGAATT TGGAGCTACCTGAAAGTGGGCTTTTGTGCGGGGAAGAGGTGGAAGTCTCAGTTGATCTCA CGGCGCCGGAGAAGGCTGGACGATACATTTCACATTGGCGTCTTATATCCCCAGCAGGGC AGAAGTTTGGTCAAAGAGTGTGGGTTACAATCCAAGTCGTGCCCCAGGGAGAACAATCTC CAATGCTACAGGAGTCCCTAAGAAAAGGGGAGGAGGTGAAAGACAACGTGAAGAATGATA GGCCCACAATTGTTGAAGTGCCTATAGTTTCAATGGAAGCAGCAGAGAAGGAGGCCACTC AATATACTGAGAAGAAAGATGAAATCATGGTTGAAGGCGTGGCTTGCCCTAGCGCTCGAG ATGTTACTGATCTTAAAGTCACAGAGCTTGGCCCAGAAGACATAAGTCAGGAGTTGGAAG GGTTTTCTCTTGTGGAGAGACCTGATGTGGAATTCGGTGATGAAGAAATGAACGATAATG CTGATAATGCAAACAAAGAAAAAAACGACCAAGAGCTGAAGCTTCAATCGCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5RC94 |
Definition |
sp|Q5RC94|NBR1_PONAB Next to BRCA1 gene 1 protein OS=Pongo abelii |
Align length |
197 |
Score (bit) |
75.5 |
E-value |
2.0e-13 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948001|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0002_C09, 5' (652 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5RC94|NBR1_PONAB Next to BRCA1 gene 1 protein OS=Pongo abeli... 75 2e-13 sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapien... 75 2e-13 sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculu... 74 7e-13 sp|Q501R9|NBR1_RAT Next to BRCA1 gene 1 protein OS=Rattus norveg... 71 4e-12 sp|Q9H6K1|CF106_HUMAN Uncharacterized protein C6orf106 OS=Homo s... 62 3e-09 sp|Q5F3N9|CF106_CHICK Uncharacterized protein C6orf106 homolog O... 62 3e-09 sp|Q5BL31|CF106_DANRE Uncharacterized protein C6orf106 homolog O... 58 5e-08 sp|Q3TT38|CF106_MOUSE Uncharacterized protein C6orf106 homolog O... 54 5e-07 sp|Q9P792|YN8B_SCHPO ZZ-type zinc finger-containing protein P35G... 38 0.053 sp|Q9JL35|NSBP1_MOUSE Nucleosome-binding protein 1 OS=Mus muscul... 34 0.76 sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE... 33 1.3 sp|Q9A3G7|RUVA_CAUCR Holliday junction ATP-dependent DNA helicas... 32 2.2 sp|A0K4S6|GRPE_BURCH Protein grpE OS=Burkholderia cenocepacia (s... 32 2.2 sp|Q1BYX5|GRPE_BURCA Protein grpE OS=Burkholderia cenocepacia (s... 32 2.2 sp|Q5UZW0|ENGB_HALMA Probable GTP-binding protein engB OS=Haloar... 32 2.2 sp|Q8TXJ2|RS12_METKA 30S ribosomal protein S12P OS=Methanopyrus ... 28 2.6 sp|Q2NEK8|RS12_METST 30S ribosomal protein S12P OS=Methanosphaer... 32 3.8 sp|A4J0F0|DNAA_DESRM Chromosomal replication initiator protein d... 32 3.8 sp|Q09847|NU146_SCHPO Nucleoporin nup146 OS=Schizosaccharomyces ... 31 4.9 sp|Q2SYZ6|GRPE_BURTA Protein grpE OS=Burkholderia thailandensis ... 31 4.9 sp|Q63R45|GRPE_BURPS Protein grpE OS=Burkholderia pseudomallei G... 31 4.9 sp|A3ND70|GRPE_BURP6 Protein grpE OS=Burkholderia pseudomallei (... 31 4.9 sp|Q3JP08|GRPE_BURP1 Protein grpE OS=Burkholderia pseudomallei (... 31 4.9 sp|A3NYX9|GRPE_BURP0 Protein grpE OS=Burkholderia pseudomallei (... 31 4.9 sp|A1V0U4|GRPE_BURMS Protein grpE OS=Burkholderia mallei (strain... 31 4.9 sp|Q62HD3|GRPE_BURMA Protein grpE OS=Burkholderia mallei GN=grpE... 31 4.9 sp|A2S567|GRPE_BURM9 Protein grpE OS=Burkholderia mallei (strain... 31 4.9 sp|A3MNA1|GRPE_BURM7 Protein grpE OS=Burkholderia mallei (strain... 31 4.9 sp|O50249|Y618_METMP Uncharacterized protein MMP0618 OS=Methanoc... 30 8.4 sp|Q8XW36|GRPE_RALSO Protein grpE OS=Ralstonia solanacearum GN=g... 30 8.4
>sp|Q5RC94|NBR1_PONAB Next to BRCA1 gene 1 protein OS=Pongo abelii GN=NBR1 PE=2 SV=1 Length = 894
Score = 75.5 bits (184), Expect = 2e-13 Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 18/197 (9%) Frame = +3
Query: 3 GTKFTKIWRMCNNGSLPWPQNTQLLHIGGDVLSLQDSVNLELPESGLLCGEEVEVSVDLT 182 GTKF K WRM N G++ W +T+L + G+ L+L + ++ L G VSV+ Sbjct: 319 GTKFIKHWRMKNTGNVKWSADTKLKFMWGN-LTLASTEKKDVLVPCLKAGHVGVVSVEFI 377
Query: 183 APEKAGRYISHWRLISPAGQKFGQRVWVTIQVVP-QGEQSPMLQESLRKGEEVKDNVKND 359 AP G Y SHWRL S GQ+FG RVW +I V P E+SP +++ KG + + K D Sbjct: 378 APALEGTYTSHWRL-SHKGQQFGPRVWCSIIVDPFPSEESP---DNIEKG--MISSSKTD 431
Query: 360 RPTIVEVPIVSMEAAEKEATQYTEKKD-----------------EIMVEGVACPSARDVT 488 T + + E++ + TE+ + E+ + V +A+D+ Sbjct: 432 DLTCQQEETFLLAKEERQLGEVTEQTEGTAACIPQKAKNVASERELYIPSVDLLTAQDLL 491
Query: 489 DLKVTELGPEDISQELE 539 ++ ++ +I QELE Sbjct: 492 SFELLDI---NIVQELE 505
>sp|Q14596|NBR1_HUMAN Next to BRCA1 gene 1 protein OS=Homo sapiens GN=NBR1 PE=1 SV=2 Length = 966
Score = 75.5 bits (184), Expect = 2e-13 Identities = 61/197 (30%), Positives = 97/197 (49%), Gaps = 18/197 (9%) Frame = +3
Query: 3 GTKFTKIWRMCNNGSLPWPQNTQLLHIGGDVLSLQDSVNLELPESGLLCGEEVEVSVDLT 182 GTKF K WRM N G++ W +T+L + G+ L+L + ++ L G VSV+ Sbjct: 389 GTKFIKHWRMKNTGNVKWSADTKLKFMWGN-LTLASTEKKDVLVPCLKAGHVGVVSVEFI 447
Query: 183 APEKAGRYISHWRLISPAGQKFGQRVWVTIQVVP-QGEQSPMLQESLRKGEEVKDNVKND 359 AP G Y SHWRL S GQ+FG RVW +I V P E+SP +++ KG + + K D Sbjct: 448 APALEGTYTSHWRL-SHKGQQFGPRVWCSIIVDPFPSEESP---DNIEKG--MISSSKTD 501
Query: 360 RPTIVEVPIVSMEAAEKEATQYTEKKD-----------------EIMVEGVACPSARDVT 488 T + + E++ + TE+ + E+ + V +A+D+ Sbjct: 502 DLTCQQEETFLLAKEERQLGEVTEQTEGTAACIPQKAKNVASERELYIPSVDLLTAQDLL 561
Query: 489 DLKVTELGPEDISQELE 539 ++ ++ +I QELE Sbjct: 562 SFELLDI---NIVQELE 575
>sp|P97432|NBR1_MOUSE Next to BRCA1 gene 1 protein OS=Mus musculus GN=Nbr1 PE=2 SV=1 Length = 988
Score = 73.9 bits (180), Expect = 7e-13 Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 13/192 (6%) Frame = +3
Query: 3 GTKFTKIWRMCNNGSLPWPQNTQLLHIGGDVLSLQDSVNLELPESGLLCGEEVEVSVDLT 182 GTKF K WRM N G++ W +T+L + G+ L+L + ++ L G VSV+ Sbjct: 390 GTKFIKHWRMKNTGNVKWNTDTKLKFMWGN-LTLASTEKKDVLVPCLKAGHVGVVSVEFI 448
Query: 183 APEKAGRYISHWRLISPAGQKFGQRVWVTIQVVP-QGEQSPMLQESLRKGEEVKDNVKND 359 AP G Y SHWRL S GQ+FG RVW +I V P +SP E R D+ + Sbjct: 449 APTLEGTYTSHWRL-SHKGQQFGPRVWCSIIVDPFPSSESPDNVEGDRISSSKADDFSCE 507
Query: 360 RPTIV-----EVPIVSME-------AAEKEATQYTEKKDEIMVEGVACPSARDVTDLKVT 503 + E+P+ + A+ + T+ + E+ + V +A+D+ ++ Sbjct: 508 QEEAFLLAEEEIPLGEVTKQTEGTGASASQKTRRAASERELYIPSVDLLTAQDLLSFELL 567
Query: 504 ELGPEDISQELE 539 ++ +I QELE Sbjct: 568 DI---NIVQELE 576
>sp|Q501R9|NBR1_RAT Next to BRCA1 gene 1 protein OS=Rattus norvegicus GN=Nbr1 PE=1 SV=1 Length = 983
Score = 71.2 bits (173), Expect = 4e-12 Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 13/192 (6%) Frame = +3
Query: 3 GTKFTKIWRMCNNGSLPWPQNTQLLHIGGDVLSLQDSVNLELPESGLLCGEEVEVSVDLT 182 GTKF K WRM N G++ W +T+L + G+ L+L + ++ L G VSV+ Sbjct: 391 GTKFIKHWRMKNTGNVKWSADTKLKFMWGN-LTLASTEKKDVLVPCLKAGHIGVVSVEFI 449
Query: 183 APEKAGRYISHWRLISPAGQKFGQRVWVTIQVVP-QGEQSPMLQESLRKGEEVKDNVKND 359 AP G Y HWRL S GQ+FG RVW +I V P +SP+ E D+ + Sbjct: 450 APTLEGTYTLHWRL-SHKGQQFGPRVWCSIIVDPFPSSESPVNLERDGISSSKADDFTCE 508
Query: 360 RPTIV-----EVPIVSME-------AAEKEATQYTEKKDEIMVEGVACPSARDVTDLKVT 503 + E+P+ + ++ + TQ+ + E+ + V +A+D+ ++ Sbjct: 509 QEEAFLLAEEEIPLGEVTKQTEGTGSSAPQKTQHAASERELYIPSVDLLTAQDLLSFELL 568
Query: 504 ELGPEDISQELE 539 ++ +I QELE Sbjct: 569 DI---NIVQELE 577
>sp|Q9H6K1|CF106_HUMAN Uncharacterized protein C6orf106 OS=Homo sapiens GN=C6orf106 PE=1 SV=2 Length = 298
Score = 61.6 bits (148), Expect = 3e-09 Identities = 32/91 (35%), Positives = 49/91 (53%) Frame = +3
Query: 6 TKFTKIWRMCNNGSLPWPQNTQLLHIGGDVLSLQDSVNLELPESGLLCGEEVEVSVDLTA 185 T+F K WR+ N+G+ WP L ++GGD VN+ + S L E +VSV + + Sbjct: 93 TQFVKTWRIQNSGAEAWPPGVCLKYVGGDQFG---HVNMVMVRS-LEPQEIADVSVQMCS 148
Query: 186 PEKAGRYISHWRLISPAGQKFGQRVWVTIQV 278 P +AG Y WR+ + G +G +WV + V Sbjct: 149 PSRAGMYQGQWRMCTATGLYYGDVIWVILSV 179
>sp|Q5F3N9|CF106_CHICK Uncharacterized protein C6orf106 homolog OS=Gallus gallus GN=RCJMB04_11e11 PE=2 SV=1 Length = 291
Score = 61.6 bits (148), Expect = 3e-09 Identities = 33/91 (36%), Positives = 48/91 (52%) Frame = +3
Query: 6 TKFTKIWRMCNNGSLPWPQNTQLLHIGGDVLSLQDSVNLELPESGLLCGEEVEVSVDLTA 185 T+FTK WR+ N G+ WP L ++GGD VN+ + S L E +VSV + + Sbjct: 93 TQFTKTWRIQNTGTEVWPPGVCLKYVGGDQFG---HVNMVMVRS-LEPQEIADVSVQMCS 148
Query: 186 PEKAGRYISHWRLISPAGQKFGQRVWVTIQV 278 P AG Y WR+ + G +G +WV + V Sbjct: 149 PSTAGMYQGQWRMCTATGLYYGDVIWVILSV 179
>sp|Q5BL31|CF106_DANRE Uncharacterized protein C6orf106 homolog OS=Danio rerio GN=zgc:101577 PE=2 SV=1 Length = 283
Score = 57.8 bits (138), Expect = 5e-08 Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Frame = +3
Query: 6 TKFTKIWRMCNNGSLPWPQNTQLLHIGGDVLSLQDSVNLELPESGLLCGEEV-EVSVDLT 182 T FTK WR+ N G+ WP L ++GGD VN+ + S L +E+ +VSV + Sbjct: 93 TPFTKTWRIQNTGTESWPPGVCLKYVGGDQFG---HVNMVMVRS--LDPQEISDVSVQMR 147
Query: 183 APEKAGRYISHWRLISPAGQKFGQRVWVTIQVVPQG 290 +P G Y WR+ + G +G +WV + V G Sbjct: 148 SPAVPGMYQGQWRMCTATGLFYGDVIWVILSVEEGG 183
>sp|Q3TT38|CF106_MOUSE Uncharacterized protein C6orf106 homolog OS=Mus musculus GN=D17Wsu92e PE=2 SV=1 Length = 291
Score = 54.3 bits (129), Expect = 5e-07 Identities = 30/91 (32%), Positives = 47/91 (51%) Frame = +3
Query: 6 TKFTKIWRMCNNGSLPWPQNTQLLHIGGDVLSLQDSVNLELPESGLLCGEEVEVSVDLTA 185 T+F K WR+ N+G+ WP L ++GGD VN+ + S L E +VSV + + Sbjct: 93 TQFIKTWRIQNSGAEAWPTGVCLKYVGGDQFG---HVNMVMVRS-LEPQEIADVSVQMCS 148
Query: 186 PEKAGRYISHWRLISPAGQKFGQRVWVTIQV 278 +AG Y WR+ + G + +WV + V Sbjct: 149 LSRAGMYQGQWRMCTDTGLYYEDVIWVILSV 179
>sp|Q9P792|YN8B_SCHPO ZZ-type zinc finger-containing protein P35G2.11c OS=Schizosaccharomyces pombe GN=SPBP35G2.11c PE=2 SV=1 Length = 397
Score = 37.7 bits (86), Expect = 0.053 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Frame = +3
Query: 3 GTKFTKIWRMCNNGSLPWPQNTQLLHIGGDVLSLQDSVNLELPESGLLCGEEVEVSVDLT 182 G F KIW + N WP + GGD L D+ S + GE+V +V L Sbjct: 292 GCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGEDVNFTVALK 351
Query: 183 APEKAGR--YISHWRLISPAGQKFGQRVWVTIQV 278 PEK+ + + + + + S G F + + ++V Sbjct: 352 VPEKSNKEIFTAFFNICSDDGSVFHKSLCAFLRV 385
>sp|Q9JL35|NSBP1_MOUSE Nucleosome-binding protein 1 OS=Mus musculus GN=Nsbp1 PE=1 SV=2 Length = 406
Score = 33.9 bits (76), Expect = 0.76 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 14/111 (12%) Frame = +3
Query: 267 TIQVVPQGEQSPMLQESLRKGEEVKD-----NVKNDRPTIVEVPIVSMEAAE-----KEA 416 T VV + + + + K E+VKD N +N I+E PI MEA E E Sbjct: 45 TTNVVEENKDASTIPIPETKPEDVKDECNMENAENGEAKIMEAPIPKMEAEEVKEQINED 104
Query: 417 TQYT--EKKDEIMVEGVACPSARDVTDLKVTELGPE--DISQELEGFSLVE 557 T+ EKK+ + E ++ D++ E G E D +E+E + E Sbjct: 105 TEEDGGEKKEAVAAEAKDDELKANIQDVEKDEDGKEHKDTGEEVEDGKIEE 155
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SHX9 |
Definition |
tr|A9SHX9|A9SHX9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
179 |
Score (bit) |
147.0 |
E-value |
4.0e-34 |
Report |
|