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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948009
Clone id TST38A01NGRL0002_C18
Library
Length 649
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_C18. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGTATCAGAGCACTAGCTTTGTCTTGGGTAAAAAGCTCCTGGAAGGAAGAGTTTGAGCAG
ACAGGAAACAAAGGGGGAGGCTCTGAGAGAGTTGGAAGAACAACCTTGTTGATCTCACTC
TCTGCGGGGTTGTCTTATTTCAGCTCCGACGGCTGTTGGTGGCACTACCACAACAATGCC
CATGTAAGGGCGGTTCAACCATCAATGCAGTGCCTAAGAGGGCAGCACTACCGACTAACA
AGAGAAGGCCGGCTAGGCTCAGGAGGCTGTCAGGGGCTCTGGGAGTAGACCAAGGGCACG
ATTGCAGGAAAAGGCTCGTTCATGTAGGAGAAGGCAACAACAACACACAAGGAGTGGGGG
TTTTGAGAGCACTGCAGAGGGGCGCCAGGCCTTGCACATGGCAGCTACATAAGCCTCAAG
GGATCTCTACAGTAAGCTTGCATGACGTCATAAGGTAGTACATGAGACAGGGGTCCATGC
CTAGACCACGGATCAAGCTCGAGCCATGGTGCTGACAGAGTCGGCAGCGTGGTAGAGTGA
CGAGTCCATGTCATCACGGGATAAAGCTGCGAAGACCACGTGTGTGCTGCGCACAGCGCC
GTCAACCATGATATCAGCACCCCAATGTTTTTTTTTATTAAAGCTTTCG
■■Homology search results ■■ -
sp_hit_id Q5FVJ4
Definition sp|Q5FVJ4|RELL2_RAT RELT-like protein 2 OS=Rattus norvegicus
Align length 104
Score (bit) 34.7
E-value 0.44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948009|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_C18, 5'
         (649 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5FVJ4|RELL2_RAT RELT-like protein 2 OS=Rattus norvegicus GN=...    35   0.44 
sp|Q8NC24|RELL2_HUMAN RELT-like protein 2 OS=Homo sapiens GN=REL...    34   0.76 
sp|Q8BRJ3|RELL2_MOUSE RELT-like protein 2 OS=Mus musculus GN=Rel...    33   1.7  
sp|Q2KI80|RELL2_BOVIN RELT-like protein 2 OS=Bos taurus GN=RELL2...    32   2.9  
sp|Q76I79|SSH1_MOUSE Protein phosphatase Slingshot homolog 1 OS=...    30   8.3  
sp|Q5R8Q4|PATL1_PONAB Protein PAT1 homolog 1 OS=Pongo abelii GN=...    30   8.3  
sp|Q86TB9|PATL1_HUMAN Protein PAT1 homolog 1 OS=Homo sapiens GN=...    30   8.3  
sp|P39881|CUX1_CANFA Homeobox protein cut-like 1 (Fragment) OS=C...    30   8.4  

>sp|Q5FVJ4|RELL2_RAT RELT-like protein 2 OS=Rattus norvegicus
           GN=Rell2 PE=2 SV=1
          Length = 302

 Score = 34.7 bits (78), Expect = 0.44
 Identities = 33/104 (31%), Positives = 46/104 (44%)
 Frame = +1

Query: 76  GGSERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRLTREGRL 255
           G SE  G T  L S+ A  S    DG   H+H   H+ +  P + C R +   L R+GR 
Sbjct: 94  GDSEGEG-TVQLSSVDATSSL--QDGAPSHHHT-VHLGSAAPCIHCSRSKRPPLVRQGRS 149

Query: 256 GSGGCQGLWE*TKGTIAGKGSFM*EKATTTHKEWGF*EHCRGAP 387
             G  +G     + T+   G F   + T   K +G  EH  G+P
Sbjct: 150 KEG--KGRPRPGETTVFSVGRF---RVTHIEKRYGLHEHRDGSP 188


>sp|Q8NC24|RELL2_HUMAN RELT-like protein 2 OS=Homo sapiens GN=RELL2
           PE=1 SV=1
          Length = 303

 Score = 33.9 bits (76), Expect = 0.76
 Identities = 33/104 (31%), Positives = 45/104 (43%)
 Frame = +1

Query: 76  GGSERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRLTREGRL 255
           G SE  G T  L S+ A  S    DG   H+H   H+ +  P + C R +   L R+GR 
Sbjct: 94  GDSEGEG-TVQLSSVDATSSL--QDGAPSHHHT-VHLGSAAPCLHCSRSKRPPLVRQGRS 149

Query: 256 GSGGCQGLWE*TKGTIAGKGSFM*EKATTTHKEWGF*EHCRGAP 387
             G  +     T  T+   G F   + T   K +G  EH  G+P
Sbjct: 150 KEGKSRPRTGET--TVFSVGRF---RVTHIEKRYGLHEHRDGSP 188


>sp|Q8BRJ3|RELL2_MOUSE RELT-like protein 2 OS=Mus musculus GN=Rell2
           PE=2 SV=1
          Length = 303

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 32/104 (30%), Positives = 45/104 (43%)
 Frame = +1

Query: 76  GGSERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRLTREGRL 255
           G SE  G T  L S+ A  S    DG   H+H   H+ +  P + C R +   L R+GR 
Sbjct: 94  GDSEGEG-TVQLSSVDATSSL--QDGAPSHHHT-VHLGSAAPCIHCSRSKRPPLVRQGRS 149

Query: 256 GSGGCQGLWE*TKGTIAGKGSFM*EKATTTHKEWGF*EHCRGAP 387
             G  +      + T+   G F   + T   K +G  EH  G+P
Sbjct: 150 KEGKSRP--RPGETTVFSVGRF---RVTHIEKRYGLHEHRDGSP 188


>sp|Q2KI80|RELL2_BOVIN RELT-like protein 2 OS=Bos taurus GN=RELL2
           PE=2 SV=1
          Length = 303

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 32/104 (30%), Positives = 45/104 (43%)
 Frame = +1

Query: 76  GGSERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRLTREGRL 255
           G SE  G T  L S+ A  S    DG   H+H   H+ +  P + C R +   L R+GR 
Sbjct: 94  GDSEGEG-TVQLSSVDATSSL--QDGAPSHHHT-VHLGSSAPCIHCSRNKRPPLVRQGRS 149

Query: 256 GSGGCQGLWE*TKGTIAGKGSFM*EKATTTHKEWGF*EHCRGAP 387
             G  +      + T+   G F   + T   K +G  EH  G+P
Sbjct: 150 KEGKSRP--RPGETTVFSVGRF---RVTHIEKRYGLHEHRDGSP 188


>sp|Q76I79|SSH1_MOUSE Protein phosphatase Slingshot homolog 1 OS=Mus
           musculus GN=Ssh1 PE=1 SV=1
          Length = 1042

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 10/128 (7%)
 Frame = +3

Query: 42  EGRV*ADRKQRGRL*ESWKNNLVDLTLCGVVLFQLRRLLVALPQQCPCKGGSTINAVPKR 221
           EG + A +++  +L   W+    D T+     F    L  AL  Q PC   +T   +P R
Sbjct: 444 EGILDASKQRHNKL---WRQQPTDDTIAEPSEFLPETLDGALDAQLPCLDDTTHPGLP-R 499

Query: 222 AALPTNKRRPARLRRLSGALGVDQGHDCRKRLVHVGE-------GNNNTQGVGVLRAL-- 374
           +  P     P   RRLS  L +   HD    LVH+ +           +Q V V + +  
Sbjct: 500 SLAPGGPALPCCFRRLSDPLLLPH-HDETGGLVHLEDLEKDALLEEEESQPVEVHKLVQH 558

Query: 375 -QRGARPC 395
            Q GAR C
Sbjct: 559 PQEGARLC 566


>sp|Q5R8Q4|PATL1_PONAB Protein PAT1 homolog 1 OS=Pongo abelii
           GN=PATL1 PE=2 SV=1
          Length = 770

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 23/82 (28%), Positives = 33/82 (40%)
 Frame = -3

Query: 533 TTLPTLSAPWLELDPWSRHGPLSHVLPYDVMQAYCRDPLRLM*LPCARPGAPLQCSQNPH 354
           +T P + +P +   P     P    +P    Q  C  P+ +      R  AP     +P+
Sbjct: 177 STSPIIGSPPVRAVPIGTP-PKQMAVPSFTQQILCPKPVHVRPPMPPRYPAPYGERMSPN 235

Query: 353 SLCVVVAFSYMNEPFPAIVPLV 288
            LC V   S +  PFP  VP V
Sbjct: 236 QLCSVPNSSLLGHPFPPSVPPV 257


>sp|Q86TB9|PATL1_HUMAN Protein PAT1 homolog 1 OS=Homo sapiens
           GN=PATL1 PE=1 SV=2
          Length = 770

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 23/82 (28%), Positives = 33/82 (40%)
 Frame = -3

Query: 533 TTLPTLSAPWLELDPWSRHGPLSHVLPYDVMQAYCRDPLRLM*LPCARPGAPLQCSQNPH 354
           +T P + +P +   P     P    +P    Q  C  P+ +      R  AP     +P+
Sbjct: 177 STSPIIGSPPVRAVPIGTP-PKQMAVPSFTQQILCPKPVHVRPPMPPRYPAPYGERMSPN 235

Query: 353 SLCVVVAFSYMNEPFPAIVPLV 288
            LC V   S +  PFP  VP V
Sbjct: 236 QLCSVPNSSLLGHPFPPSVPPV 257


>sp|P39881|CUX1_CANFA Homeobox protein cut-like 1 (Fragment)
           OS=Canis familiaris GN=CUX1 PE=2 SV=1
          Length = 975

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 266 AVRGSGSRPRARLQEKARSCRRRQQQHTRSGG 361
           A RG   RP AR + + R  RRR+++H R GG
Sbjct: 857 AARGPSRRPGARAKPRRR--RRRRRRHARGGG 886
tr_hit_id B3K5R8
Definition tr|B3K5R8|B3K5R8_9BACI Short-chain dehydrogenase/reductase SDR OS=Geobacillus sp. Y412MC10
Align length 112
Score (bit) 39.3
E-value 0.21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948009|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_C18, 5'
         (649 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3K5R8|B3K5R8_9BACI Short-chain dehydrogenase/reductase SDR O...    39   0.21 
tr|B4N7A0|B4N7A0_DROWI GK21064 OS=Drosophila willistoni GN=GK210...    34   6.7  
tr|Q6ZUC7|Q6ZUC7_HUMAN cDNA FLJ43812 fis, clone TESTI4001206 OS=...    34   6.7  

>tr|B3K5R8|B3K5R8_9BACI Short-chain dehydrogenase/reductase SDR
           OS=Geobacillus sp. Y412MC10 GN=GYMC10DRAFT_1005 PE=4
           SV=1
          Length = 260

 Score = 39.3 bits (90), Expect = 0.21
 Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
 Frame = +3

Query: 87  ESWKNNLVDLTLCGVVLFQLRRLLVALPQQCPCKGGSTINAVPKRAALPTNKRRPARLRR 266
           ESW ++L DL L G + F       A+P      GG+ IN     A  P     P+ + R
Sbjct: 107 ESWASDL-DLKLFGAIRFSR----AAVPHLRNSGGGAIINVTTSWAKTPPASSMPSSVSR 161

Query: 267 LSG-ALGVDQGHDCRKRLVHVGEGNNNTQGVGVLRALQRGARPCTWQLHKPQ 419
            +G A+     HD  K  + V     NT  +G +R+ Q  AR   W+   P+
Sbjct: 162 AAGQAMTKAMSHDLAKDHIRV-----NTVCIGTIRSAQLEAR---WKRESPE 205


>tr|B4N7A0|B4N7A0_DROWI GK21064 OS=Drosophila willistoni GN=GK21064
            PE=4 SV=1
          Length = 1068

 Score = 34.3 bits (77), Expect = 6.7
 Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = -3

Query: 620  VLISWLTALCAAHTWSSQLYPVMTWTRHSTTLPTLSA--PWLELDPWSRHGPLSHV--LP 453
            + + ++   C +H +S +L     WT+    L TL +  PW +L P+ R G  +HV  LP
Sbjct: 839  IKVWYIVNYCGSHDYSCRL-----WTQGGRYLGTLGSVLPWTKLSPFERAGDDTHVYRLP 893

Query: 452  YDVMQAYCRDPLRLM 408
             D+ +      L+++
Sbjct: 894  PDIKKVASSTTLKVI 908


>tr|Q6ZUC7|Q6ZUC7_HUMAN cDNA FLJ43812 fis, clone TESTI4001206
           OS=Homo sapiens PE=2 SV=1
          Length = 138

 Score = 34.3 bits (77), Expect = 6.7
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = +3

Query: 549 CHHGIKLRRPRVCCAQRR 602
           CHH I LR P  CCAQRR
Sbjct: 19  CHHSISLRTPMDCCAQRR 36