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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948015
Clone id TST38A01NGRL0002_C24
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_C24. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTAGGTATGGTGCTTGATTTTTACCGAGCTGCTGCACCACTAATGTGGTTGCATTCACGA
GCTCATGCAGAAAGATGCTGGCAAAAACTTTGGCCTGTGTTGATATGGGTGGAGGCTGTC
AGCTCTGAGGATGAAGTGCCGGTACAAGGTTATACGTTTGTGTATTGTCTTCACCTTTTC
TGATTCATGGGCCTCATTTGCAATGGTGGGTTTGCAAGACTATGTAGCAAATCTATTTGC
CCTGATGCTTCCCATGGTGAAGTAAGCCTAACCCTTGAGGTTTTGATCTTATCGAGGGGT
TTTGCTTTTAGTCATGTTTGGCAATTGCTTCCGGACCTTGTAATGATTACGTGCAGCATG
CGCATGTGGCAACAGTTGTCTGGTTCTTGCATTGTCGGCACTTCGAGTTTTGAACTTTTC
TCAAGCTTCAACCTTGCAGTAGTTTGCAGTACATCTAAATGAGAGTGGGCCATGTTAATC
TNNNANAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
■■Homology search results ■■ -
sp_hit_id Q3M769
Definition sp|Q3M769|SYR_ANAVT Arginyl-tRNA synthetase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
Align length 42
Score (bit) 31.6
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948015|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_C24, 5'
         (486 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3M769|SYR_ANAVT Arginyl-tRNA synthetase OS=Anabaena variabil...    32   2.0  
sp|Q60976|JERKY_MOUSE Jerky protein OS=Mus musculus GN=Jrk PE=2 ...    32   2.0  
sp|O75564|JERKY_HUMAN Jerky protein homolog OS=Homo sapiens GN=J...    31   3.4  
sp|Q6ZS10|YS008_HUMAN C-type lectin and transmembrane domain-con...    30   7.6  

>sp|Q3M769|SYR_ANAVT Arginyl-tRNA synthetase OS=Anabaena variabilis
           (strain ATCC 29413 / PCC 7937) GN=argS PE=3 SV=1
          Length = 588

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = -1

Query: 420 EKFKTRSADNARTRQLLPHAHAARNHYKVRKQLPNMTKSKTP 295
           +KFKTRS D  R R LL  A  +R H  + ++L    + +TP
Sbjct: 382 KKFKTRSGDTVRLRDLLDEA-VSRAHADLEERLKAEEREETP 422


>sp|Q60976|JERKY_MOUSE Jerky protein OS=Mus musculus GN=Jrk PE=2
           SV=2
          Length = 557

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 70  ERCWQKLWPVLIWVEAVSSEDE 135
           +R W+KLWP + + E  SSE+E
Sbjct: 379 QRAWRKLWPTVTFTEGSSSEEE 400


>sp|O75564|JERKY_HUMAN Jerky protein homolog OS=Homo sapiens GN=JRK
           PE=2 SV=2
          Length = 520

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 73  RCWQKLWPVLIWVEAVSSEDEVPVQ 147
           R W+KLWP + + E  SSE+E+  +
Sbjct: 332 RAWRKLWPSVAFAEGSSSEEELEAE 356


>sp|Q6ZS10|YS008_HUMAN C-type lectin and transmembrane
           domain-containing protein FLJ45910 OS=Homo sapiens PE=2
           SV=1
          Length = 306

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 28  AAAPLMWLHSRAHAERCWQKLWPVLIWVEAVSS 126
           AA P+ WL+ R+    C QK W V + +  V+S
Sbjct: 148 AATPVPWLNQRSGGPGCCQKRWMVYLCLLVVTS 180
tr_hit_id A0NWE9
Definition tr|A0NWE9|A0NWE9_9RHOB Sterol desaturase family protein OS=Labrenzia aggregata IAM 12614
Align length 79
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948015|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_C24, 5'
         (486 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A0NWE9|A0NWE9_9RHOB Sterol desaturase family protein OS=Labre...    39   0.17 
tr|Q2F658|Q2F658_BOMMO Solute carrier family 35 member B3 OS=Bom...    36   1.1  
tr|Q63MJ8|Q63MJ8_BURPS Family S15 non-peptidase homologue OS=Bur...    34   3.2  
tr|Q3JGD0|Q3JGD0_BURP1 Family S15 non-peptidase homologue OS=Bur...    34   3.2  
tr|A3P3K8|A3P3K8_BURP0 Hydrolase, CocE/NonD family OS=Burkholder...    34   3.2  
tr|A3NI02|A3NI02_BURP6 Hydrolase, CocE/NonD family OS=Burkholder...    34   3.2  
tr|A3MEQ2|A3MEQ2_BURM7 X-prolyl-dipeptidyl aminopeptidase OS=Bur...    34   3.2  
tr|A2RW22|A2RW22_BURM9 Family S15 non-peptidase OS=Burkholderia ...    34   3.2  
tr|B7CGM7|B7CGM7_BURPS Hydrolase, CocE/NonD family OS=Burkholder...    34   3.2  
tr|B2H6B3|B2H6B3_BURPS Hydrolase, CocE/NonD family OS=Burkholder...    34   3.2  
tr|B1H4U4|B1H4U4_BURPS Hydrolase, CocE/NonD family OS=Burkholder...    34   3.2  
tr|A8KQK7|A8KQK7_BURPS Hydrolase, CocE/NonD family OS=Burkholder...    34   3.2  
tr|A8EKA5|A8EKA5_BURPS Hydrolase, CocE/NonD family OS=Burkholder...    34   3.2  
tr|A5TFL8|A5TFL8_BURMA Putative family S15 non-peptidase OS=Burk...    34   3.2  
tr|A4LI58|A4LI58_BURPS Hydrolase, CocE/NonD family OS=Burkholder...    33   5.5  
tr|Q5TYS6|Q5TYS6_DANRE Novel protein (Fragment) OS=Danio rerio G...    33   7.0  

>tr|A0NWE9|A0NWE9_9RHOB Sterol desaturase family protein
           OS=Labrenzia aggregata IAM 12614 GN=SIAM614_16012 PE=4
           SV=1
          Length = 259

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
 Frame = +1

Query: 229 KSICPDASHGEVSLTLEVLILSRGFAFSHVWQLLPDLVMITCSMRMWQQLSGSCIVGTSS 408
           +SI P     + S T++ LI    F +  VW +LP   +   ++R++ Q+SG  +VG S 
Sbjct: 129 RSIAPTVWSNDSSTTVDTLI--EHFFYLLVWFVLPVPALSVFALRLFDQISG--MVGHSG 184

Query: 409 FELFSS----FNLAVVCST 453
           FE F+S    F   ++C+T
Sbjct: 185 FEYFASKSSRFPSPLICTT 203


>tr|Q2F658|Q2F658_BOMMO Solute carrier family 35 member B3 OS=Bombyx
           mori PE=2 SV=1
          Length = 375

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
 Frame = +1

Query: 103 IWVEAVSSEDEVPVQGYTFVYCLHLF*FMGLICNGGFARLCSKSICPDAS--HGEVSLTL 276
           I V+ ++   E PV+ Y  ++ L L  +MGL       R+C  ++    +     +S+ +
Sbjct: 246 ILVDGLAYGAETPVEMYRNIFLLSLSGYMGLQAVLTLVRICGATVAVTVTTMRKALSIII 305

Query: 277 EVLILSRGFAFSHVW 321
             L+ S+ F F +VW
Sbjct: 306 SFLLFSKPFVFQYVW 320


>tr|Q63MJ8|Q63MJ8_BURPS Family S15 non-peptidase homologue
           OS=Burkholderia pseudomallei GN=BPSS0654 PE=4 SV=1
          Length = 578

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 22  YRAAAPL-MWLHSRAHAERCWQKLW 93
           YRA  P+ +WLHSR H +  WQK W
Sbjct: 310 YRAKKPVQLWLHSRNHDDPAWQKEW 334


>tr|Q3JGD0|Q3JGD0_BURP1 Family S15 non-peptidase homologue
           OS=Burkholderia pseudomallei (strain 1710b) GN=pepX PE=4
           SV=1
          Length = 654

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 22  YRAAAPL-MWLHSRAHAERCWQKLW 93
           YRA  P+ +WLHSR H +  WQK W
Sbjct: 386 YRAKKPVQLWLHSRNHDDPAWQKEW 410


>tr|A3P3K8|A3P3K8_BURP0 Hydrolase, CocE/NonD family OS=Burkholderia
           pseudomallei (strain 1106a) GN=BURPS1106A_A0882 PE=4
           SV=1
          Length = 578

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 22  YRAAAPL-MWLHSRAHAERCWQKLW 93
           YRA  P+ +WLHSR H +  WQK W
Sbjct: 310 YRAKKPVQLWLHSRNHDDPAWQKEW 334


>tr|A3NI02|A3NI02_BURP6 Hydrolase, CocE/NonD family OS=Burkholderia
           pseudomallei (strain 668) GN=BURPS668_A0974 PE=4 SV=1
          Length = 654

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 22  YRAAAPL-MWLHSRAHAERCWQKLW 93
           YRA  P+ +WLHSR H +  WQK W
Sbjct: 386 YRAKKPVQLWLHSRNHDDPAWQKEW 410


>tr|A3MEQ2|A3MEQ2_BURM7 X-prolyl-dipeptidyl aminopeptidase
           OS=Burkholderia mallei (strain NCTC 10247)
           GN=BMA10247_A1555 PE=4 SV=1
          Length = 578

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 22  YRAAAPL-MWLHSRAHAERCWQKLW 93
           YRA  P+ +WLHSR H +  WQK W
Sbjct: 310 YRAKKPVQLWLHSRNHDDPAWQKEW 334


>tr|A2RW22|A2RW22_BURM9 Family S15 non-peptidase OS=Burkholderia
           mallei (strain NCTC 10229) GN=BMA10229_0065 PE=4 SV=1
          Length = 578

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 22  YRAAAPL-MWLHSRAHAERCWQKLW 93
           YRA  P+ +WLHSR H +  WQK W
Sbjct: 310 YRAKKPVQLWLHSRNHDDPAWQKEW 334


>tr|B7CGM7|B7CGM7_BURPS Hydrolase, CocE/NonD family OS=Burkholderia
           pseudomallei 576 GN=BUC_5051 PE=4 SV=1
          Length = 578

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 22  YRAAAPL-MWLHSRAHAERCWQKLW 93
           YRA  P+ +WLHSR H +  WQK W
Sbjct: 310 YRAKKPVQLWLHSRNHDDPAWQKEW 334


>tr|B2H6B3|B2H6B3_BURPS Hydrolase, CocE/NonD family OS=Burkholderia
           pseudomallei 1655 GN=BURPS1655_I0139 PE=4 SV=1
          Length = 578

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 22  YRAAAPL-MWLHSRAHAERCWQKLW 93
           YRA  P+ +WLHSR H +  WQK W
Sbjct: 310 YRAKKPVQLWLHSRNHDDPAWQKEW 334