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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948018
Clone id TST38A01NGRL0002_D03
Library
Length 680
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_D03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GCCATCGCTAGCTCTGAGATCTCCAACACCATGGATGCCCTCTGCAGCGTCAACTTCTCT
TTGCGTCAGTTTTCCATTCGGCGATGGTCGTCGTCTCCCCTGCTCATTAACCGCCTGGCT
ATGCCGAGCTTTTCTCTGTGTGGTCCGTCCTCTTCATCTCCTGCGAAACCCCTGATCATC
GTTAGCTCTTACAGTCCAAGGCGGCCCTCTGATAGAAGCTACAGAAGGGACCAGCCGAAC
GTATACGAGCTCGACCTAGAGGAGCAGGTGTCACAGATTGACATGGATCCCAACAAGATG
CTTCAACCAGGAGACCCTAACTCTATGCAGGCCATCATCAAGGATGTCATGCCTGTTGGC
TACTTTGTTTCTCTTCCCACAGGCAGAGATGGCTACCTTCCTGCAGATGATTTGGGTTTC
ACAGGTGGGCTTGCAATCTTGCGCAAGCTCTTCAAAGAAGGGCAGGAGATCACTGTGCGA
ATTGTATGCAGAGGCGGGGCAGGAAGGGAGATTATTTCTGTGAAAAAGCCAGAGTTTGCA
CCTCCAAGTGAGCAGAAGACCATTGAAAGCTTAAGGCTTCATTTTGAGAATGAGAAGAAG
AACAGGATGAATCCCCGAAATCGGCGGCGTCAGCAATACAACAATTACTAGGGTTGGGCC
ATGTATCAATTGAGCCAGGC
■■Homology search results ■■ -
sp_hit_id A6L0A5
Definition sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154)
Align length 50
Score (bit) 33.1
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948018|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_D03, 5'
         (680 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase OS...    33   1.4  
sp|Q64N73|PNP_BACFR Polyribonucleotide nucleotidyltransferase OS...    33   1.8  
sp|Q5L7Z7|PNP_BACFN Polyribonucleotide nucleotidyltransferase OS...    33   1.8  
sp|A5URV5|PNP_ROSS1 Polyribonucleotide nucleotidyltransferase OS...    32   2.4  
sp|Q8A4N6|PNP_BACTN Polyribonucleotide nucleotidyltransferase OS...    32   2.4  
sp|Q9P5N2|YH83_SCHPO Uncharacterized amino-acid permease C359.03...    32   3.1  
sp|Q0S208|PNP_RHOSR Polyribonucleotide nucleotidyltransferase OS...    32   3.1  
sp|O65405|CRK28_ARATH Cysteine-rich receptor-like protein kinase...    32   3.1  
sp|Q30TH2|PNP_SULDN Polyribonucleotide nucleotidyltransferase OS...    32   4.1  
sp|A6LFK9|PNP_PARD8 Polyribonucleotide nucleotidyltransferase OS...    32   4.1  
sp|Q8CPH2|TRMFO_STAES Methylenetetrahydrofolate--tRNA-(uracil-5-...    31   5.3  
sp|Q5HPU1|TRMFO_STAEQ Methylenetetrahydrofolate--tRNA-(uracil-5-...    31   5.3  
sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria mening...    31   5.3  
sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae GN=...    31   6.9  
sp|Q31GJ9|PNP_THICR Polyribonucleotide nucleotidyltransferase OS...    30   9.1  

>sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
           NCTC 11154) GN=pnp PE=3 SV=1
          Length = 711

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 337 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 486
           ++ VMP G FV    G+DG L   ++ +     I     KEG EI V+++
Sbjct: 636 VRSVMPYGVFVEFLPGKDGLLHISEIDWKRLETIEEAGLKEGDEIEVKLL 685


>sp|Q64N73|PNP_BACFR Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides fragilis GN=pnp PE=3 SV=1
          Length = 708

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 337 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 486
           ++ +MP G FV    G+DG L   ++ +     +     KEG EI V+++
Sbjct: 636 VRSIMPYGAFVEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685


>sp|Q5L7Z7|PNP_BACFN Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
           GN=pnp PE=3 SV=1
          Length = 708

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 337 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 486
           ++ +MP G FV    G+DG L   ++ +     +     KEG EI V+++
Sbjct: 636 VRSIMPYGAFVEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685


>sp|A5URV5|PNP_ROSS1 Polyribonucleotide nucleotidyltransferase
           OS=Roseiflexus sp. (strain RS-1) GN=pnp PE=3 SV=1
          Length = 747

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +1

Query: 346 VMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV-CRGGAGREIIS 519
           +MP G FV+L  G+DG +   +L   G +  +  + K G EI V ++    G G+  +S
Sbjct: 639 IMPFGAFVNLAPGKDGMVHVSELD-VGRVENVEDVIKMGDEINVMVIGIEPGTGKVSLS 696


>sp|Q8A4N6|PNP_BACTN Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides thetaiotaomicron GN=pnp PE=3 SV=1
          Length = 708

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 337 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 486
           ++ +MP G F+    G+DG L   ++ +     +     KEG EI V+++
Sbjct: 636 VRSIMPYGAFIEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685


>sp|Q9P5N2|YH83_SCHPO Uncharacterized amino-acid permease C359.03c
           OS=Schizosaccharomyces pombe GN=SPBC359.03c PE=2 SV=1
          Length = 579

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +1

Query: 310 GDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVC 489
           G+   + A+IK V  VG+ +       G +P D  G+ GG  I +K F+ G +    +  
Sbjct: 212 GEVEFVLALIKVVATVGFIILAIIINCGGVPTDHRGYIGGSIIKQKPFRHGFKGFCSVYT 271

Query: 490 RGG---AGREIISVKKPEFAPP 546
                 +G EI+ +   E   P
Sbjct: 272 TAAFSFSGTEIVGLAAAEVGDP 293


>sp|Q0S208|PNP_RHOSR Polyribonucleotide nucleotidyltransferase
           OS=Rhodococcus sp. (strain RHA1) GN=pnp PE=3 SV=1
          Length = 757

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +1

Query: 358 GYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGR-EIISVKKPE 534
           G FVSL  GRDG +    LG    +A +  +   G ++ V I      G+  +I V++  
Sbjct: 683 GAFVSLLPGRDGLVHISKLGSGKRIAKVEDVVSVGSKLRVEIADIDNRGKISLIPVEEDG 742

Query: 535 FAPPSEQ 555
            A P+EQ
Sbjct: 743 AAAPAEQ 749


>sp|O65405|CRK28_ARATH Cysteine-rich receptor-like protein kinase 28
           OS=Arabidopsis thaliana GN=CRK28 PE=2 SV=2
          Length = 683

 Score = 32.0 bits (71), Expect = 3.1
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 364 FVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITV-RIVCRGGAG 504
           F +L    D + P ++LG  G  ++ + +F  GQEI V R+ C  G G
Sbjct: 351 FETLKAATDNFSPENELGRGGFGSVYKGVFSGGQEIAVKRLSCTSGQG 398


>sp|Q30TH2|PNP_SULDN Polyribonucleotide nucleotidyltransferase
           OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
           1251) GN=pnp PE=3 SV=1
          Length = 721

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 328 QAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 486
           + I+K ++  G F+ LP G DG L    +     +  +  + KEG+EI V I+
Sbjct: 658 KGIVKKIVEFGAFIELPDGVDGLLHISKIS-DQRVEKVSDILKEGEEINVEIL 709


>sp|A6LFK9|PNP_PARD8 Polyribonucleotide nucleotidyltransferase
           OS=Parabacteroides distasonis (strain ATCC 8503 / DSM
           20701 / NCTC 11152) GN=pnp PE=3 SV=1
          Length = 746

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 337 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 486
           I  +MP G FV    G+DG L   ++ +     + +   KEG  ++V++V
Sbjct: 636 ISSIMPYGAFVEFMPGKDGLLHISEIDWKRLETVEQAGLKEGDTVSVKLV 685
tr_hit_id A6E805
Definition tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylase OS=Pedobacter sp. BAL39
Align length 79
Score (bit) 40.4
E-value 0.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948018|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_D03, 5'
         (680 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylas...    40   0.10 
tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genom...    40   0.10 
tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton th...    40   0.18 
tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein OS=Bacte...    39   0.31 
tr|A4SGB6|A4SGB6_PROVI SSU ribosomal protein S1P OS=Prosthecochl...    37   1.5  
tr|A7I0M8|A7I0M8_CAMHC 30S ribosomal protein S1 OS=Campylobacter...    36   2.0  
tr|A4XKP1|A4XKP1_CALS8 Hydroxymethylbutenyl pyrophosphate reduct...    35   3.4  
tr|B6YKM5|B6YKM5_9BACT RNA binding S1 domain protein OS=Thermoto...    35   3.4  
tr|B4U6I5|B4U6I5_HYDS0 RNA binding S1 domain protein OS=Hydrogen...    35   4.4  
tr|B1YGQ3|B1YGQ3_EXIS2 RNA binding S1 domain protein OS=Exiguoba...    35   4.4  
tr|A6LNG6|A6LNG6_THEM4 Hydroxymethylbutenyl pyrophosphate reduct...    35   4.4  
tr|B5YH71|B5YH71_THEYD 30S ribosomal protein S1 OS=Thermodesulfo...    35   5.8  
tr|Q08WR4|Q08WR4_STIAU RNA binding S1 OS=Stigmatella aurantiaca ...    35   5.8  
tr|Q3AFC3|Q3AFC3_CARHZ Ribonuclease R OS=Carboxydothermus hydrog...    34   7.5  
tr|Q1D6H1|Q1D6H1_MYXXD Ribosomal protein S1 family protein OS=My...    34   7.5  
tr|B3DUV3|B3DUV3_METI4 Ribosomal protein S1 OS=Methylacidiphilum...    34   7.5  
tr|A7HME7|A7HME7_FERNB Hydroxymethylbutenyl pyrophosphate reduct...    34   7.5  
tr|A1AM10|A1AM10_PELPD SSU ribosomal protein S1P OS=Pelobacter p...    34   7.5  
tr|A9SJH6|A9SJH6_PHYPA Predicted protein OS=Physcomitrella paten...    34   7.5  
tr|A4R541|A4R541_MAGGR Putative uncharacterized protein OS=Magna...    34   7.5  
tr|Q8KFN4|Q8KFN4_CHLTE Ribosomal protein S1 OS=Chlorobium tepidu...    34   9.8  
tr|Q0AA52|Q0AA52_ALHEH SSU ribosomal protein S1P OS=Alkalilimnic...    34   9.8  
tr|B3QQD6|B3QQD6_CHLP8 RNA binding S1 domain protein OS=Chloroba...    34   9.8  
tr|B2RZJ3|B2RZJ3_BORHD SSU ribosomal protein S1P OS=Borrelia her...    34   9.8  
tr|A0PYT7|A0PYT7_CLONN Leucine Rich Repeat domain protein OS=Clo...    34   9.8  
tr|Q7X1F1|Q7X1F1_9BACT Lfe154p1 (Fragment) OS=Leptospirillum fer...    34   9.8  
tr|B2QDR6|B2QDR6_9BACL RNA binding S1 domain protein OS=Exiguoba...    34   9.8  
tr|O24288|O24288_PEA Polynucleotide phosphorylase OS=Pisum sativ...    34   9.8  

>tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylase
           OS=Pedobacter sp. BAL39 GN=PBAL39_00932 PE=4 SV=1
          Length = 715

 Score = 40.4 bits (93), Expect = 0.10
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
 Frame = +1

Query: 337 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREII 516
           +K +MP G FV +  G+DG L   ++ +T  L  +  +FKEG ++ V+++     G+  +
Sbjct: 636 VKSIMPFGAFVEIMPGKDGLLHISEIDWT-RLETMDGVFKEGDKLQVKLLDIDKQGKMKL 694

Query: 517 SVK-------KPEFAPPSE 552
           S K       KPE AP ++
Sbjct: 695 SRKVLLPRPPKPEGAPANK 713


>tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016702001
           PE=4 SV=1
          Length = 553

 Score = 40.4 bits (93), Expect = 0.10
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = +1

Query: 325 MQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTG-GLAILRKLFKEGQEITVRIVCRGGA 501
           ++  +K++   G F+SLP G +G+LP  +    G G  +     + GQE++VR++ R   
Sbjct: 266 LEGTVKNLNRAGAFISLPEGEEGFLPTSEEADEGFGNLMGGSSLQVGQEVSVRVL-RISR 324

Query: 502 GREIISVKKPEFAPPSEQKTIESL 573
           G+  +++KK E A   + K  E +
Sbjct: 325 GQVTLTMKKEEDAEKLDLKLGEGV 348


>tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton
           thalassium (strain ATCC 35110 / GB-78) GN=Ctha_0115 PE=4
           SV=1
          Length = 616

 Score = 39.7 bits (91), Expect = 0.18
 Identities = 23/82 (28%), Positives = 41/82 (50%)
 Frame = +1

Query: 337 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREII 516
           I  ++  G  V LP+G DG++PA  L   GG+  +   FK G E+ ++++      + II
Sbjct: 486 IAQIIEKGVIVELPSGVDGFVPASHL-LQGGVRDINASFKVGDELPLKVIEFDRENKRII 544

Query: 517 SVKKPEFAPPSEQKTIESLRLH 582
                 F   S+++  E ++ H
Sbjct: 545 LSALEYFKGKSKEEIEEYMKQH 566


>tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein
           OS=Bacteroides capillosus ATCC 29799 GN=BACCAP_00512
           PE=4 SV=1
          Length = 150

 Score = 38.9 bits (89), Expect = 0.31
 Identities = 21/63 (33%), Positives = 36/63 (57%)
 Frame = +1

Query: 358 GYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREIISVKKPEF 537
           G FVSLP G+ G +   ++ ++  +  ++   KEGQE+ V+++     GR  +S+KK   
Sbjct: 20  GAFVSLPEGKSGLVHISEIAYSY-VNDVKDYLKEGQEVKVKVIGIDENGRINLSIKKAMD 78

Query: 538 APP 546
            PP
Sbjct: 79  PPP 81


>tr|A4SGB6|A4SGB6_PROVI SSU ribosomal protein S1P
           OS=Prosthecochloris vibrioformis (strain DSM 265)
           GN=Cvib_1514 PE=4 SV=1
          Length = 602

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 27/90 (30%), Positives = 42/90 (46%)
 Frame = +1

Query: 331 AIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGRE 510
           A I  ++  G  V LP   DG++PA  L   GG+  +   FK G  + +R++      + 
Sbjct: 492 AEISQIIEKGVIVILPGDVDGFVPATHL-LQGGVKDIHSSFKIGDALPLRVIEFDKENKR 550

Query: 511 IISVKKPEFAPPSEQKTIESLRLHFENEKK 600
           II +   E+     ++ IES      NEKK
Sbjct: 551 II-LSALEYFKDKSKEEIESYLQAHPNEKK 579


>tr|A7I0M8|A7I0M8_CAMHC 30S ribosomal protein S1 OS=Campylobacter
           hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 /
           CH001A) GN=CHAB381_0481 PE=4 SV=1
          Length = 557

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +1

Query: 301 LQPGDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVR 480
           L+ GD  ++Q  + ++ P G FV L    +G+L   ++ +   +   +    EGQEI V 
Sbjct: 284 LEVGD--TIQVTVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDFISEGQEINVE 341

Query: 481 IVCRGGAGREI-ISVK 525
           +V   G  R + +S+K
Sbjct: 342 VVEINGDDRRLRVSLK 357


>tr|A4XKP1|A4XKP1_CALS8 Hydroxymethylbutenyl pyrophosphate reductase
           OS=Caldicellulosiruptor saccharolyticus (strain ATCC
           43494 / DSM 8903) GN=Csac_1891 PE=4 SV=1
          Length = 662

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 18/68 (26%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
 Frame = +1

Query: 334 IIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREI 513
           +I ++   G  V+   G  G++PA ++ ++  +  ++KLFK G+++ VR++      ++I
Sbjct: 481 VIAEIRQKGIVVNFE-GLRGFVPASEISYSKRIEDVKKLFKVGEQVKVRVIDIDKQKKQI 539

Query: 514 -ISVKKPE 534
            +S+KK +
Sbjct: 540 YLSIKKTQ 547


>tr|B6YKM5|B6YKM5_9BACT RNA binding S1 domain protein
           OS=Thermotogales bacterium TBF 19.5.1 GN=KoleDRAFT_0875
           PE=4 SV=1
          Length = 572

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 17/74 (22%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
 Frame = +1

Query: 268 VSQIDMDPNKMLQPGDP--NSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAIL 441
           + Q+  DP   ++   P  + ++ ++K ++P G+FV +  G +G +   ++ +      L
Sbjct: 263 LKQLQEDPWNTVEEKYPVGSVVEGVVKSIVPFGFFVMIEPGVEGLVHISEVFWGNVRRDL 322

Query: 442 RKLFKEGQEITVRI 483
           ++L +EG  + V+I
Sbjct: 323 KELIREGDRVKVKI 336


>tr|B4U6I5|B4U6I5_HYDS0 RNA binding S1 domain protein
           OS=Hydrogenobaculum sp. (strain Y04AAS1)
           GN=HY04AAS1_0061 PE=4 SV=1
          Length = 525

 Score = 35.0 bits (79), Expect = 4.4
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +1

Query: 304 QPGDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRI 483
           +PG    ++  +K+V P G F+ LP G DG LP  ++     L       + GQ ITV++
Sbjct: 423 KPGQ--QVELAVKEVRPFGTFLGLPEGIDGLLPISEIPKNTNL-------EPGQNITVKV 473

Query: 484 V 486
           +
Sbjct: 474 L 474


>tr|B1YGQ3|B1YGQ3_EXIS2 RNA binding S1 domain protein
           OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM
           13490 / 255-15) GN=Exig_0049 PE=4 SV=1
          Length = 176

 Score = 35.0 bits (79), Expect = 4.4
 Identities = 21/79 (26%), Positives = 39/79 (49%)
 Frame = +1

Query: 319 NSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGG 498
           + +Q  +  +   G FV LPTG+ G +   ++     +  +  +   GQEITV+++    
Sbjct: 7   SKVQGKVTGITNFGAFVELPTGKTGLVHISEVA-DSYVKDINDVLTVGQEITVKVLSVEN 65

Query: 499 AGREIISVKKPEFAPPSEQ 555
            G+  +S+KK    P  E+
Sbjct: 66  DGKIGLSIKKAVDRPEGER 84