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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948034
Clone id TST38A01NGRL0002_D22
Library
Length 581
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_D22. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CCTTACCAGGGCTTGACATGCTGCGAATCCTCTTGAAAGAGGGGAGCGCCTTCGGGAACG
CAGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCC
GCAACGAGCGCAACCCCCGTGTTTAGTTGCCATTACCAAGTTTGGAACCCTAGACAGACT
GCCGGTGACAAGCCGGAGGAAGGTGGGGATGACGTCAAGTCAGCATGCCCCTTACGCCCT
GGGCGACACACGTGCTACAATGGCCGAAACAGAGAGCCGCGACCCCGCGAGGGCAAGCTA
ACCTCAGAAACTCGGTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAGCCGGA
ATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATCCGTTCCCGGGCCTTGTACACA
CCGCCCGTCACACTACGGAAGCTGGCCATGCCCGAAGTCGTTGGCTTAACCGCAAGGGGA
CAGATGCCTAAGGCAGGGCTAGTGACTGGAGTGAAGTCGGAACAAGGTAGCCGTACCGGA
AGGTGCGGCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q89DD2
Definition sp|Q89DD2|EX7L_BRAJA Exodeoxyribonuclease 7 large subunit OS=Bradyrhizobium japonicum
Align length 65
Score (bit) 31.6
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948034|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_D22, 5'
         (553 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q89DD2|EX7L_BRAJA Exodeoxyribonuclease 7 large subunit OS=Bra...    32   2.7  
sp|Q5R8Q7|GTPB1_PONAB GTP-binding protein 1 (Fragment) OS=Pongo ...    31   3.5  
sp|Q9UNN5|FAF1_HUMAN FAS-associated factor 1 OS=Homo sapiens GN=...    30   7.9  

>sp|Q89DD2|EX7L_BRAJA Exodeoxyribonuclease 7 large subunit
           OS=Bradyrhizobium japonicum GN=xseA PE=3 SV=1
          Length = 545

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = -1

Query: 349 AGELQPAIRTETEFLRLACPRGVAALCFGHCSTCVAQGVRGMLT*RHPHLPPACHRQSV* 170
           AG+L    R   +    A PRG+ A    H     A G +  L   H  +  A HR +V 
Sbjct: 321 AGDLLAIPRQRLDSAGAALPRGLKANTHAHFRRFTAAGAKLTLRVLHGQIAQADHRLTVC 380

Query: 169 GSKLG 155
           G +LG
Sbjct: 381 GERLG 385


>sp|Q5R8Q7|GTPB1_PONAB GTP-binding protein 1 (Fragment) OS=Pongo
           abelii GN=GTPBP1 PE=2 SV=2
          Length = 602

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = -2

Query: 411 GPGTDSPPYG*PAITSDSGFMQASCSLQSELRPSF*G*LALAGSRLSVSAIVARVSP 241
           GP   +PP G  A +  +G   ASC+LQ + +PS  G     G R  V +  A V+P
Sbjct: 543 GPAVGAPPPGDEASSLGAGQPAASCNLQPQPKPSS-GGRRRGGQRYKVKSQGACVTP 598


>sp|Q9UNN5|FAF1_HUMAN FAS-associated factor 1 OS=Homo sapiens
           GN=FAF1 PE=1 SV=2
          Length = 650

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 356 PESLVIAGQPYGGESVPGPCTHRPSHYGSWPCPKS 460
           P+   I    YGGE++PGP  +  SH  S P   S
Sbjct: 46  PQENGILQSEYGGETIPGPAFNPASHPASAPTSSS 80
tr_hit_id A4EB57
Definition tr|A4EB57|A4EB57_9ACTN Putative uncharacterized protein OS=Collinsella aerofaciens ATCC 25986
Align length 65
Score (bit) 92.4
E-value 3.0e-37
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948034|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_D22, 5'
         (553 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4EB57|A4EB57_9ACTN Putative uncharacterized protein OS=Colli...    92   3e-37
tr|A4QMB2|A4QMB2_PINKO ORF137 OS=Pinus koraiensis PE=4 SV=1           136   8e-31
tr|A4EBI3|A4EBI3_9ACTN Putative uncharacterized protein OS=Colli...    91   2e-28
tr|A8SIB0|A8SIB0_9FIRM Putative uncharacterized protein OS=Parvi...    86   3e-27
tr|A9LGX2|A9LGX2_9BACT Putative uncharacterized protein OS=uncul...   124   4e-27
tr|A5APK5|A5APK5_VITVI Putative uncharacterized protein OS=Vitis...    87   3e-26
tr|A8SSP0|A8SSP0_9FIRM Putative uncharacterized protein OS=Copro...    94   5e-25
tr|A8SSM3|A8SSM3_9FIRM Putative uncharacterized protein OS=Copro...    93   1e-24
tr|A5ZLI4|A5ZLI4_9BACE Putative uncharacterized protein OS=Bacte...    56   5e-23
tr|A7VD49|A7VD49_9CLOT Putative uncharacterized protein OS=Clost...    89   2e-22
tr|B4V366|B4V366_9ACTO Putative uncharacterized protein OS=Strep...   105   1e-21
tr|B0TIG6|B0TIG6_HELMI Putative uncharacterized protein OS=Helio...   104   3e-21
tr|B5GPA2|B5GPA2_STRCL Putative uncharacterized protein OS=Strep...   103   8e-21
tr|B5GFB1|B5GFB1_9ACTO Putative uncharacterized protein OS=Strep...   101   3e-20
tr|Q848V9|Q848V9_BACME Putative uncharacterized protein OS=Bacil...    68   6e-20
tr|B1SRT7|B1SRT7_9BACI Putative uncharacterized protein OS=Geoba...   100   7e-20
tr|B1SBJ4|B1SBJ4_9STRE Putative uncharacterized protein (Fragmen...    77   9e-20
tr|A6P027|A6P027_9BACE Putative uncharacterized protein OS=Bacte...    77   1e-19
tr|A7B8Q3|A7B8Q3_9ACTO Putative uncharacterized protein OS=Actin...    99   2e-19
tr|A7VSA4|A7VSA4_9CLOT Putative uncharacterized protein OS=Clost...    75   2e-19
tr|B5H5N2|B5H5N2_STRPR Putative uncharacterized protein OS=Strep...    95   2e-18
tr|B6XZ95|B6XZ95_ANATH Putative uncharacterized protein OS=Anaer...    77   6e-18
tr|B0TBS2|B0TBS2_HELMI Putative uncharacterized protein OS=Helio...    67   1e-17
tr|Q3RFD0|Q3RFD0_XYLFA Putative uncharacterized protein OS=Xylel...    92   2e-17
tr|Q3R8Y4|Q3R8Y4_XYLFA Putative uncharacterized protein OS=Xylel...    92   2e-17
tr|A7UXY7|A7UXY7_BACUN Putative uncharacterized protein OS=Bacte...    90   7e-17
tr|A5ZLI5|A5ZLI5_9BACE Putative uncharacterized protein OS=Bacte...    89   2e-16
tr|B5G7E6|B5G7E6_9ACTO Putative uncharacterized protein OS=Strep...    89   2e-16
tr|A7PXZ9|A7PXZ9_VITVI Chromosome chr15 scaffold_37, whole genom...    89   2e-16
tr|B1BA66|B1BA66_CLOBO Putative lipoprotein OS=Clostridium botul...    47   4e-16

>tr|A4EB57|A4EB57_9ACTN Putative uncharacterized protein
           OS=Collinsella aerofaciens ATCC 25986 GN=COLAER_01671
           PE=4 SV=1
          Length = 160

 Score = 92.4 bits (228), Expect(3) = 3e-37
 Identities = 45/65 (69%), Positives = 48/65 (73%)
 Frame = +1

Query: 166 NPRQTAGDKPEEGGDDVKSACPLRPGRHTCYNGRNREPRPREGKLTSETRSQFGLQAATR 345
           NPR TA  K EEGGDDVKS+CPL PG HTCYNGR R   PREG+   E+R QFGL AATR
Sbjct: 49  NPRGTAAVKAEEGGDDVKSSCPLCPGLHTCYNGRYRGMPPREGERIPESRPQFGLGAATR 108

Query: 346 LHEAG 360
            HE G
Sbjct: 109 PHEVG 113



 Score = 58.9 bits (141), Expect(3) = 3e-37
 Identities = 27/31 (87%), Positives = 27/31 (87%)
 Frame = +3

Query: 60  ADTGGAWLSSARAVRCWVKSRNERNPRV*LP 152
           A TGGAWLSSAR VRCWVKSRNERNPR  LP
Sbjct: 13  AHTGGAWLSSARVVRCWVKSRNERNPRRVLP 43



 Score = 48.1 bits (113), Expect(3) = 3e-37
 Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
 Frame = +2

Query: 344 ACMKPESLVIA---GQPYGGESVPGPCTHRPSHYGSWPCPKSLA*PQGDRCLRQG 499
           A  +P  + +A   G    GE VPGPCTHRPSH+ S   PKS A P+G R  R G
Sbjct: 105 AATRPHEVGVASNRGSACRGECVPGPCTHRPSHHPSRLHPKSPAQPRGGRRRRCG 159


>tr|A4QMB2|A4QMB2_PINKO ORF137 OS=Pinus koraiensis PE=4 SV=1
          Length = 137

 Score =  136 bits (342), Expect = 8e-31
 Identities = 68/77 (88%), Positives = 69/77 (89%)
 Frame = -3

Query: 551 KPHLPVRLPCSDFTPVTSPALGICPLAVKPTTSGMASFRSVTGGVYKARERIHRRMADRR 372
           +PHLPVRLPC DFTPVTSPA GI  LAVK TT GMAS  SVTGGVYKARERIHRRMADRR
Sbjct: 61  QPHLPVRLPCYDFTPVTSPAFGIPLLAVKVTTWGMASSHSVTGGVYKARERIHRRMADRR 120

Query: 371 LLAIPASCRRVAACNPN 321
           LLAIPASCRRVAACNPN
Sbjct: 121 LLAIPASCRRVAACNPN 137


>tr|A4EBI3|A4EBI3_9ACTN Putative uncharacterized protein
           OS=Collinsella aerofaciens ATCC 25986 GN=COLAER_01802
           PE=4 SV=1
          Length = 115

 Score = 90.5 bits (223), Expect(2) = 2e-28
 Identities = 44/64 (68%), Positives = 48/64 (75%)
 Frame = +1

Query: 166 NPRQTAGDKPEEGGDDVKSACPLRPGRHTCYNGRNREPRPREGKLTSETRSQFGLQAATR 345
           NPR TA  K EEGGDDVKS+CPL PG HTCYNGR R   PREG+   E+R QFGL AATR
Sbjct: 49  NPRGTAAVKAEEGGDDVKSSCPLCPGLHTCYNGRYRGMPPREGERIPESRPQFGLGAATR 108

Query: 346 LHEA 357
            HE+
Sbjct: 109 PHES 112



 Score = 58.9 bits (141), Expect(2) = 2e-28
 Identities = 27/31 (87%), Positives = 27/31 (87%)
 Frame = +3

Query: 60  ADTGGAWLSSARAVRCWVKSRNERNPRV*LP 152
           A TGGAWLSSAR VRCWVKSRNERNPR  LP
Sbjct: 13  AHTGGAWLSSARVVRCWVKSRNERNPRRVLP 43


>tr|A8SIB0|A8SIB0_9FIRM Putative uncharacterized protein
           OS=Parvimonas micra ATCC 33270 GN=PEPMIC_00056 PE=4 SV=1
          Length = 122

 Score = 85.9 bits (211), Expect(2) = 3e-27
 Identities = 48/82 (58%), Positives = 54/82 (65%)
 Frame = +2

Query: 164 GTLDRLPVTSRRKVGMTSSQHAPYALGDTRATMAETESRDPARAS*PQKLGLSSDCRLQL 343
           GTL+RLP+T+RRKVGMTS+ HA Y LG TRATM  T   +    S   K  LSSDCRLQL
Sbjct: 2   GTLERLPMTNRRKVGMTSNHHALYVLGYTRATMVGTTRSEIEMLSETLKTNLSSDCRLQL 61

Query: 344 ACMKPESLVIAGQPYGGESVPG 409
           A MK E LVIA Q     + PG
Sbjct: 62  AYMKSELLVIANQNVAVNAFPG 83



 Score = 59.3 bits (142), Expect(2) = 3e-27
 Identities = 29/48 (60%), Positives = 32/48 (66%)
 Frame = +3

Query: 384 HTAVNPFPGLVHTARHTTEAGHARSRWLNRKGTDA*GRASDWSEVGTR 527
           + AVN FPGLVHTARHT   G+ RSR  NRK     GR +DW EV TR
Sbjct: 75  NVAVNAFPGLVHTARHTMGVGNTRSRRSNRKEEGVEGRVNDWGEVVTR 122


>tr|A9LGX2|A9LGX2_9BACT Putative uncharacterized protein
           OS=uncultured planctomycete 3FN GN=3FN_20 PE=4 SV=1
          Length = 112

 Score =  124 bits (310), Expect = 4e-27
 Identities = 69/110 (62%), Positives = 74/110 (67%)
 Frame = +2

Query: 164 GTLDRLPVTSRRKVGMTSSQHAPYALGDTRATMAETESRDPARAS*PQKLGLSSDCRLQL 343
           GTL+RLPV +RRK G TSS H  Y  G TRATM  T+    AR S PQK  LSSDCRLQL
Sbjct: 3   GTLERLPVLNRRKAGTTSSHHGLYVQGCTRATMGRTKGSKLARVSKPQKASLSSDCRLQL 62

Query: 344 ACMKPESLVIAGQPYGGESVPGPCTHRPSHYGSWPCPKSLA*PQGDRCLR 493
           A MK ESLVIAGQ Y GE VP PCTHRPS + S   P S + P G R LR
Sbjct: 63  AYMKLESLVIAGQLYCGEYVPEPCTHRPSSHESGGHPTSPSQPSGGRRLR 112


>tr|A5APK5|A5APK5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_012000 PE=3 SV=1
          Length = 1193

 Score = 87.4 bits (215), Expect(2) = 3e-26
 Identities = 45/55 (81%), Positives = 46/55 (83%)
 Frame = -3

Query: 551 KPHLPVRLPCSDFTPVTSPALGICPLAVKPTTSGMASFRSVTGGVYKARERIHRR 387
           +PHLPVRLP  DFTPVTSPA GI  LAVK TTSGMAS  SVTGGVYKARERIH R
Sbjct: 118 QPHLPVRLPYYDFTPVTSPAFGIPLLAVKVTTSGMASSHSVTGGVYKARERIHCR 172



 Score = 54.7 bits (130), Expect(2) = 3e-26
 Identities = 26/38 (68%), Positives = 28/38 (73%)
 Frame = -1

Query: 364 RFRLHAGELQPAIRTETEFLRLACPRGVAALCFGHCST 251
           R R+H  ELQPAIRTE  FL LA PRG+A LC  HCST
Sbjct: 166 RERIHCRELQPAIRTEDGFLELAHPRGIATLCPDHCST 203


>tr|A8SSP0|A8SSP0_9FIRM Putative uncharacterized protein
           OS=Coprococcus eutactus ATCC 27759 GN=COPEUT_01256 PE=4
           SV=1
          Length = 100

 Score = 94.4 bits (233), Expect(2) = 5e-25
 Identities = 52/82 (63%), Positives = 59/82 (71%)
 Frame = +2

Query: 164 GTLDRLPVTSRRKVGMTSSQHAPYALGDTRATMAETESRDPARAS*PQKLGLSSDCRLQL 343
           GTL+RLP  +RRKVGMTS+ HAPY LG TRATMA T+  +P +AS PQK  LSSDC LQL
Sbjct: 2   GTLERLPGITRRKVGMTSNHHAPYDLGYTRATMAVTKRSEPVKASKPQKGCLSSDCSLQL 61

Query: 344 ACMKPESLVIAGQPYGGESVPG 409
             MK ESLVIA Q     + PG
Sbjct: 62  DYMKLESLVIADQHAAVNTFPG 83



 Score = 43.5 bits (101), Expect(2) = 5e-25
 Identities = 19/26 (73%), Positives = 21/26 (80%)
 Frame = +3

Query: 384 HTAVNPFPGLVHTARHTTEAGHARSR 461
           H AVN FPGLVHTARHT   G+ARS+
Sbjct: 75  HAAVNTFPGLVHTARHTMGVGNARSQ 100


>tr|A8SSM3|A8SSM3_9FIRM Putative uncharacterized protein
           OS=Coprococcus eutactus ATCC 27759 GN=COPEUT_01243 PE=4
           SV=1
          Length = 100

 Score = 93.2 bits (230), Expect(2) = 1e-24
 Identities = 52/82 (63%), Positives = 58/82 (70%)
 Frame = +2

Query: 164 GTLDRLPVTSRRKVGMTSSQHAPYALGDTRATMAETESRDPARAS*PQKLGLSSDCRLQL 343
           GTL+RLP  +RRKVGMTS+ HAPY LG TRATMA T+   P +AS PQK  LSSDC LQL
Sbjct: 2   GTLERLPGITRRKVGMTSNHHAPYDLGYTRATMAVTKRSKPVKASKPQKGCLSSDCSLQL 61

Query: 344 ACMKPESLVIAGQPYGGESVPG 409
             MK ESLVIA Q     + PG
Sbjct: 62  DYMKLESLVIADQHAAVNTFPG 83



 Score = 43.5 bits (101), Expect(2) = 1e-24
 Identities = 19/26 (73%), Positives = 21/26 (80%)
 Frame = +3

Query: 384 HTAVNPFPGLVHTARHTTEAGHARSR 461
           H AVN FPGLVHTARHT   G+ARS+
Sbjct: 75  HAAVNTFPGLVHTARHTMGVGNARSQ 100


>tr|A5ZLI4|A5ZLI4_9BACE Putative uncharacterized protein
           OS=Bacteroides caccae ATCC 43185 GN=BACCAC_03786 PE=4
           SV=1
          Length = 153

 Score = 55.8 bits (133), Expect(3) = 5e-23
 Identities = 26/37 (70%), Positives = 28/37 (75%)
 Frame = +1

Query: 175 QTAGDKPEEGGDDVKSACPLRPGRHTCYNGRNREPRP 285
           +TA  + EEGGDDVKSA PLRPG HTCYNG  R P P
Sbjct: 51  ETAVVRCEEGGDDVKSARPLRPGLHTCYNGGYRRPLP 87



 Score = 54.3 bits (129), Expect(3) = 5e-23
 Identities = 28/45 (62%), Positives = 32/45 (71%)
 Frame = +2

Query: 308 KLGLSSDCRLQLACMKPESLVIAGQPYGGESVPGPCTHRPSHYGS 442
           K  LSSD  LQ   +K +SLVIA QP+ GE VPGPCTHRPS + S
Sbjct: 95  KTSLSSDRSLQPDFVKLDSLVIAHQPWRGEYVPGPCTHRPSSHES 139



 Score = 41.2 bits (95), Expect(3) = 5e-23
 Identities = 18/23 (78%), Positives = 19/23 (82%)
 Frame = +3

Query: 69  GGAWLSSARAVRCWVKSRNERNP 137
           G AWLSSARAVRC +K  NERNP
Sbjct: 15  GAAWLSSARAVRCRLKCHNERNP 37


>tr|A7VD49|A7VD49_9CLOT Putative uncharacterized protein
           OS=Clostridium sp. L2-50 GN=CLOL250_00829 PE=4 SV=1
          Length = 100

 Score = 88.6 bits (218), Expect(2) = 2e-22
 Identities = 50/82 (60%), Positives = 57/82 (69%)
 Frame = +2

Query: 164 GTLDRLPVTSRRKVGMTSSQHAPYALGDTRATMAETESRDPARAS*PQKLGLSSDCRLQL 343
           GTL+RLP  +RRKVGMTS+ HAPY LG TRATMA T+  +  + S PQK  LSSDC LQL
Sbjct: 2   GTLERLPGITRRKVGMTSNHHAPYDLGYTRATMAVTKRSETVKWSKPQKGCLSSDCSLQL 61

Query: 344 ACMKPESLVIAGQPYGGESVPG 409
             MK ESLVIA Q     + PG
Sbjct: 62  DYMKLESLVIADQNAAVNTFPG 83



 Score = 40.8 bits (94), Expect(2) = 2e-22
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +3

Query: 384 HTAVNPFPGLVHTARHTTEAGHARSR 461
           + AVN FPGLVHTARHT   G+ARS+
Sbjct: 75  NAAVNTFPGLVHTARHTMGVGNARSQ 100