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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948055
Clone id TST38A01NGRL0002_E19
Library
Length 584
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_E19. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AGATTCTCGGTCCTTCTTACGCAGAGGTCCTGCATCATCTCTTCGTTCCAATATCAGGGC
GGTGGCGCAATATGCTTCAGAAGGGGGTGACGGCAAGTATGCTTCGGAGGCAGTTCGTGA
ATGTATTGCTTCACTTGAAGAACTTGATTCCCTTTTACTAAGGGCCTCAAGGAATGATTC
GTCTGCGACTATTCAGAAGATGACGGAAAAATTAGATGCAGCGGTAGCTGCTCTGGACAA
GCTTTTGACTACTGTTCCTGCTTCAATGTTGGAGAAAGGTAAGGCCATTGCAGCTTCGTA
TCGGGAATCCACTCCTTTATCTGCTGCCCCCGACGAAGCAGACGCAGACACAAAGGTGCT
AGAAAGTCTCTTGTAGCTTAAGGAAGGCAGTCTTGATATATATTTATCATCAATATATAT
TGTTACTGGCTATTCAAGAGAGGTATCTTGACTTTAGCTGGACCTCTACTCTTCAATACC
AAAGAGATTCCCAGTAGGGAAGCAAGGATTGTGCAGCTACAGCTGCATTTCTAAGAAGAT
TATCAGGTTGCAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8TPJ2
Definition sp|Q8TPJ2|PURA1_METAC Adenylosuccinate synthetase 1 OS=Methanosarcina acetivorans
Align length 36
Score (bit) 30.8
E-value 4.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948055|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_E19, 5'
         (555 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TPJ2|PURA1_METAC Adenylosuccinate synthetase 1 OS=Methanosa...    31   4.6  

>sp|Q8TPJ2|PURA1_METAC Adenylosuccinate synthetase 1
           OS=Methanosarcina acetivorans GN=purA1 PE=3 SV=1
          Length = 424

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 29  PASSLRSNIRAVAQYASEGGDGKYASEAVRECIASL 136
           PA S+ S I     ++S+ GDG + +E +  CI SL
Sbjct: 252 PARSITSVIGVAKAFSSQVGDGPFPTEVLDNCIVSL 287
tr_hit_id B8APD0
Definition tr|B8APD0|B8APD0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 119
Score (bit) 106.0
E-value 7.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948055|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_E19, 5'
         (555 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8APD0|B8APD0_ORYSI Putative uncharacterized protein OS=Oryza...   106   7e-22
tr|A9TVU7|A9TVU7_PHYPA Predicted protein OS=Physcomitrella paten...   104   4e-21
tr|A7P4T6|A7P4T6_VITVI Chromosome chr4 scaffold_6, whole genome ...    97   7e-19
tr|O48702|O48702_ARATH Expressed protein (Putative uncharacteriz...    93   8e-18
tr|Q0DUN5|Q0DUN5_ORYSJ Os03g0176600 protein OS=Oryza sativa subs...    78   3e-13
tr|Q10R05|Q10R05_ORYSJ Expressed protein (Putative uncharacteriz...    68   3e-10
tr|A8IS75|A8IS75_CHLRE Predicted protein OS=Chlamydomonas reinha...    48   3e-04
tr|A3AEP5|A3AEP5_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.049
tr|Q10R04|Q10R04_ORYSJ cDNA clone:J033148K19, full insert sequen...    40   0.083
tr|Q0DUN3|Q0DUN3_ORYSJ Os03g0176800 protein (Fragment) OS=Oryza ...    40   0.083
tr|B8APR4|B8APR4_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.083
tr|B4VPS2|B4VPS2_9CYAN Putative uncharacterized protein OS=Micro...    36   1.2  
tr|Q0DUN4|Q0DUN4_ORYSJ Os03g0176700 protein OS=Oryza sativa subs...    35   3.5  
tr|A7P8H1|A7P8H1_VITVI Chromosome chr3 scaffold_8, whole genome ...    34   4.6  
tr|A5AYY1|A5AYY1_VITVI Putative uncharacterized protein OS=Vitis...    34   4.6  
tr|B2ARM9|B2ARM9_PODAN Predicted CDS Pa_4_6980 OS=Podospora anse...    34   6.0  
tr|A5UDV2|A5UDV2_HAEIE Autoinducer-2 (AI-2) kinase OS=Haemophilu...    33   7.8  
tr|A2BJK4|A2BJK4_HYPBU Putative uncharacterized protein OS=Hyper...    33   7.8  

>tr|B8APD0|B8APD0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10231 PE=4 SV=1
          Length = 231

 Score =  106 bits (265), Expect = 7e-22
 Identities = 59/119 (49%), Positives = 76/119 (63%)
 Frame = +2

Query: 2   DSRSFLRRGPASSLRSNIRAVAQYASEGGDGKYASEAVRECIASLEELDSLLLRASRNDS 181
           +SRS LR GPASSLR NIRAVAQYAS  G GK AS+AV EC+ +LE+LDSLLL+ASRN+ 
Sbjct: 106 ESRSLLRSGPASSLRINIRAVAQYASSSGQGKAASDAVDECLRALEDLDSLLLQASRNNP 165

Query: 182 SATIQKMTEXXXXXXXXXXXXXXXXPASMLEKGKAIAASYRESTPLSAAPDEADADTKV 358
           SA++  M                  P+++L+KGKAIA +YR  T      D  + D ++
Sbjct: 166 SASVDVMRSKISVALGALDNLLQTVPSAVLDKGKAIANAYRTPTDDYEMGDATELDPRL 224


>tr|A9TVU7|A9TVU7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172263 PE=4 SV=1
          Length = 289

 Score =  104 bits (259), Expect = 4e-21
 Identities = 54/102 (52%), Positives = 70/102 (68%)
 Frame = +2

Query: 2   DSRSFLRRGPASSLRSNIRAVAQYASEGGDGKYASEAVRECIASLEELDSLLLRASRNDS 181
           D+RS LR GPA SLR++IRAVAQYA+E G+GK A+EAV +C+++LE+LDSLL RASR   
Sbjct: 135 DARSMLRNGPAGSLRNDIRAVAQYAAEAGNGKTANEAVDQCLSALEDLDSLLFRASRESG 194

Query: 182 SATIQKMTEXXXXXXXXXXXXXXXXPASMLEKGKAIAASYRE 307
           SA+I  M                  P ++LEKGKA+A +YRE
Sbjct: 195 SASIDVMKSRVSTAVTALDKLLATVPENILEKGKAVATAYRE 236


>tr|A7P4T6|A7P4T6_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032275001
           PE=4 SV=1
          Length = 182

 Score = 96.7 bits (239), Expect = 7e-19
 Identities = 55/116 (47%), Positives = 73/116 (62%)
 Frame = +2

Query: 8   RSFLRRGPASSLRSNIRAVAQYASEGGDGKYASEAVRECIASLEELDSLLLRASRNDSSA 187
           RS LR GPA+SLR NIRAVAQYAS+ G+GK A   V +C+ +LEELDSLLL+ASR++  A
Sbjct: 62  RSLLRYGPAASLRVNIRAVAQYASDSGNGKTAFNDVDQCLRALEELDSLLLQASRSNPGA 121

Query: 188 TIQKMTEXXXXXXXXXXXXXXXXPASMLEKGKAIAASYRESTPLSAAPDEADADTK 355
           +++ M                  P+ +L+KGKAIA +YR +    A P+  D D K
Sbjct: 122 SVETMKAKIGVALDALDSLLQTVPSDILDKGKAIADAYR-TPDEDADPENLDPDMK 176


>tr|O48702|O48702_ARATH Expressed protein (Putative uncharacterized
           protein) (Putative uncharacterized protein At2g26340)
           OS=Arabidopsis thaliana GN=At2g26340 PE=2 SV=2
          Length = 230

 Score = 93.2 bits (230), Expect = 8e-18
 Identities = 52/113 (46%), Positives = 68/113 (60%)
 Frame = +2

Query: 8   RSFLRRGPASSLRSNIRAVAQYASEGGDGKYASEAVRECIASLEELDSLLLRASRNDSSA 187
           R  LR GPASSLR NIRAVAQYAS+ G  K A++ V  C+ +LEELDSL LRASR DS+A
Sbjct: 108 RRQLRSGPASSLRVNIRAVAQYASDDGFSKTATDDVDRCLRALEELDSLFLRASRKDSNA 167

Query: 188 TIQKMTEXXXXXXXXXXXXXXXXPASMLEKGKAIAASYRESTPLSAAPDEADA 346
           T+  M                  P+ +L+KGKA+   YR ++   A  D+ ++
Sbjct: 168 TVVLMKSQLGTALTALDSLLQTVPSQVLDKGKAMVEVYRSASEEDAGSDDLES 220


>tr|Q0DUN5|Q0DUN5_ORYSJ Os03g0176600 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0176600 PE=4 SV=1
          Length = 108

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 43/99 (43%), Positives = 59/99 (59%)
 Frame = +2

Query: 62  VAQYASEGGDGKYASEAVRECIASLEELDSLLLRASRNDSSATIQKMTEXXXXXXXXXXX 241
           VAQYAS  G GK AS+AV EC+ +LE+LDSLLL+ASRN+ SA++  M             
Sbjct: 3   VAQYASSSGQGKAASDAVDECLRALEDLDSLLLQASRNNPSASVDVMRSKISVALGALDN 62

Query: 242 XXXXXPASMLEKGKAIAASYRESTPLSAAPDEADADTKV 358
                P+++L+KGKAIA +YR  T      D  + D ++
Sbjct: 63  LLQTVPSAVLDKGKAIADAYRTPTDDYEMGDATELDPRL 101


>tr|Q10R05|Q10R05_ORYSJ Expressed protein (Putative uncharacterized
           protein) OS=Oryza sativa subsp. japonica
           GN=LOC_Os03g07960 PE=4 SV=1
          Length = 194

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 45/119 (37%), Positives = 58/119 (48%)
 Frame = +2

Query: 2   DSRSFLRRGPASSLRSNIRAVAQYASEGGDGKYASEAVRECIASLEELDSLLLRASRNDS 181
           +SRS LR GPASSLR NIRAVAQYAS  G GK AS+AV EC+  L+ +            
Sbjct: 106 ESRSLLRSGPASSLRINIRAVAQYASSSGQGKAASDAVDECLRLLQTV------------ 153

Query: 182 SATIQKMTEXXXXXXXXXXXXXXXXPASMLEKGKAIAASYRESTPLSAAPDEADADTKV 358
                                    P+++L+KGKAIA +YR  T      D  + D ++
Sbjct: 154 -------------------------PSAVLDKGKAIADAYRTPTDDYEMGDATELDPRL 187


>tr|A8IS75|A8IS75_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_206257 PE=4 SV=1
          Length = 273

 Score = 48.1 bits (113), Expect = 3e-04
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
 Frame = +2

Query: 5   SRSFLRRGPASSLRSNIRAVAQYASEGGDGKYASEAVRECIASLEELDSLLLRASRNDSS 184
           +R  LR GP + LR NIRA+ +YA+  G        V     +LE  D LLL A R+ + 
Sbjct: 132 ARELLRAGPYNGLRDNIRAIGEYAARDGRTTEVGPLVTGFFKALEGYDQLLLNALRDKTP 191

Query: 185 ATIQKMTEXXXXXXXXXXXXXXXXPASMLEKGKAI------AASYRESTPLSAAPDEAD 343
               K+                  PA +LE+ + +       A+ R+  P   A   A+
Sbjct: 192 VEADKLDACIADLYAAFDKLIATVPADILEQAQRVLDVTMAKAAVRQEEPAGGAEGGAE 250


>tr|A3AEP5|A3AEP5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009267 PE=4 SV=1
          Length = 766

 Score = 40.8 bits (94), Expect = 0.049
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
 Frame = +2

Query: 8   RSFLRRGPASSLRSNIRAVAQYASEGGDGKYASEAVRECIASLEELDS----LLLRASRN 175
           RS ++  P SSL SNI+ VA Y +     K AS+AV  C+ +L +L S    L LRAS  
Sbjct: 640 RSLVQSSPVSSLHSNIQNVAGYYASNDIEKAASKAVNICLRTLAQLVSGNVFLSLRAS-E 698

Query: 176 DSSATIQKMT 205
           D +  +Q+ T
Sbjct: 699 DLNQVLQEST 708


>tr|Q10R04|Q10R04_ORYSJ cDNA clone:J033148K19, full insert sequence
           OS=Oryza sativa subsp. japonica GN=LOC_Os03g07970 PE=2
           SV=1
          Length = 472

 Score = 40.0 bits (92), Expect = 0.083
 Identities = 22/59 (37%), Positives = 35/59 (59%)
 Frame = +2

Query: 8   RSFLRRGPASSLRSNIRAVAQYASEGGDGKYASEAVRECIASLEELDSLLLRASRNDSS 184
           RS ++  P SSL SNI+ VA Y +     K AS+AV  C+ + E+L+ +L  ++   S+
Sbjct: 361 RSLVQSSPVSSLHSNIQNVAGYYASNDIEKAASKAVNICLRASEDLNQVLQESTSYPSA 419


>tr|Q0DUN3|Q0DUN3_ORYSJ Os03g0176800 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os03g0176800 PE=4 SV=1
          Length = 539

 Score = 40.0 bits (92), Expect = 0.083
 Identities = 22/59 (37%), Positives = 35/59 (59%)
 Frame = +2

Query: 8   RSFLRRGPASSLRSNIRAVAQYASEGGDGKYASEAVRECIASLEELDSLLLRASRNDSS 184
           RS ++  P SSL SNI+ VA Y +     K AS+AV  C+ + E+L+ +L  ++   S+
Sbjct: 428 RSLVQSSPVSSLHSNIQNVAGYYASNDIEKAASKAVNICLRASEDLNQVLQESTSYPSA 486