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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948126
Clone id TST38A01NGRL0002_H21
Library
Length 632
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_H21. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGGCCGCACAACTTTGTACAAGAAAGTTGGGTTTTTTTTTTTTTTTTGTAGGGAGAAAGG
AGGTAGAGATCAAGTAAGTGGGGCAACAACTGTCACCCCTGCCAGTTGTTCCACGTATAG
GAGATAGGGATGACGGGATTTGAACCTGCGACATTTTGTACCCAAAACAAACACGCTACC
GAGCTGCGTTACATCCCTTTTGGTTGTACTTGATACCATCAACCCCTTGCTTGTTATTCG
ATCCAATTGATTATAATCTTTTCCCACGAATACTGGCTACCGTCGAAGTAGGAATGCATT
TTTTGGGAAGCTGCTAATCCCTGCCCTCTCTTTATTTTAATTCCCACTTTTCATTCTCTA
CACCACTTCTCGACTTAGTATTCTGGAGTCGGGTACTGGAAAAAACTTTATTCTTCTTTC
AAGTAAATGTGAGAATTTGATTTAGATATAGTTAGATTTTAAGTAGTAAAGCTGGTGAGG
ATAAAGGCAAGTAGGTAGGGAAATAAAAAATTGATAAGAAGGAGGATTCCAATGCAACAT
GTAAAAATATATCTTTCCACAGCCCCTGTTGTAGCTACAATATGGTTTGGCTTACTGGCT
GGTTTATTAATAGAAATAAATCGATTCTTTCC
■■Homology search results ■■ -
sp_hit_id Q85FK2
Definition sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX OS=Adiantum capillus-veneris
Align length 33
Score (bit) 69.3
E-value 1.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948126|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_H21, 5'
         (585 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX OS...    69   1e-11
sp|Q1ACI1|PSAJ_CHAVU Photosystem I reaction center subunit IX OS...    61   4e-09
sp|Q8M9Y5|PSAJ_CHAGL Photosystem I reaction center subunit IX OS...    61   4e-09
sp|A6BM27|PSAJ_GNEPA Photosystem I reaction center subunit IX OS...    61   5e-09
sp|Q8WI01|PSAJ_PSINU Photosystem I reaction center subunit IX OS...    60   6e-09
sp|Q6YXM2|PSAJ_PHYPA Photosystem I reaction center subunit IX OS...    60   6e-09
sp|P12191|PSAJ_MARPO Photosystem I reaction center subunit IX OS...    60   6e-09
sp|A2T353|PSAJ_ANGEV Photosystem I reaction center subunit IX OS...    60   6e-09
sp|Q32RT6|PSAJ_STAPU Photosystem I reaction center subunit IX OS...    60   8e-09
sp|Q32RH5|PSAJ_ZYGCR Photosystem I reaction center subunit IX OS...    59   2e-08
sp|Q5SD35|PSAJ_HUPLU Photosystem I reaction center subunit IX OS...    59   2e-08
sp|A6H5K2|PSAJ_CYCTA Photosystem I reaction center subunit IX OS...    58   4e-08
sp|Q859W0|PSAJ_ANTFO Photosystem I reaction center subunit IX OS...    57   5e-08
sp|B2Y1X9|PSAJ_WELMI Photosystem I reaction center subunit IX OS...    57   7e-08
sp|Q2PMR4|PSAJ_SOYBN Photosystem I reaction center subunit IX OS...    55   2e-07
sp|A4GGC6|PSAJ_PHAVU Photosystem I reaction center subunit IX OS...    55   2e-07
sp|Q3BAM0|PSAJ_PHAAO Photosystem I reaction center subunit IX OS...    55   2e-07
sp|Q7YJV6|PSAJ_CALFG Photosystem I reaction center subunit IX OS...    55   2e-07
sp|Q09G26|PSAJ_PLAOC Photosystem I reaction center subunit IX OS...    55   3e-07
sp|Q06FK6|PSAJ_PELHO Photosystem I reaction center subunit IX OS...    55   3e-07
sp|A4GYT1|PSAJ_POPTR Photosystem I reaction center subunit IX OS...    55   3e-07
sp|Q14FD7|PSAJ_POPAL Photosystem I reaction center subunit IX OS...    55   3e-07
sp|B1NWH0|PSAJ_MANES Photosystem I reaction center subunit IX OS...    55   3e-07
sp|A9L9B6|PSAJ_LEMMI Photosystem I reaction center subunit IX OS...    55   3e-07
sp|B2XWM5|PSAJ_FAGEA Photosystem I reaction center subunit IX OS...    55   3e-07
sp|Q70XY6|PSAJ_AMBTC Photosystem I reaction center subunit IX OS...    55   3e-07
sp|Q0ZJ00|PSAJ_VITVI Photosystem I reaction center subunit IX OS...    54   4e-07
sp|P12193|PSAJ_TOBAC Photosystem I reaction center subunit IX OS...    54   4e-07
sp|Q2VEF8|PSAJ_SOLTU Photosystem I reaction center subunit IX OS...    54   4e-07
sp|Q2MI80|PSAJ_SOLLC Photosystem I reaction center subunit IX OS...    54   4e-07

>sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX
           OS=Adiantum capillus-veneris GN=psaJ PE=2 SV=2
          Length = 42

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF
Sbjct: 1   MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 33


>sp|Q1ACI1|PSAJ_CHAVU Photosystem I reaction center subunit IX
           OS=Chara vulgaris GN=psaJ PE=3 SV=1
          Length = 41

 Score = 61.2 bits (147), Expect = 4e-09
 Identities = 28/33 (84%), Positives = 31/33 (93%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           MQ VK YLSTAPV+AT+WFGLLAG+LIEINRFF
Sbjct: 1   MQDVKTYLSTAPVLATLWFGLLAGILIEINRFF 33


>sp|Q8M9Y5|PSAJ_CHAGL Photosystem I reaction center subunit IX
           OS=Chaetosphaeridium globosum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 61.2 bits (147), Expect = 4e-09
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           MQ+ K YLSTAPV+ATIWFG LAGLLIEINRFF
Sbjct: 1   MQYFKTYLSTAPVIATIWFGFLAGLLIEINRFF 33


>sp|A6BM27|PSAJ_GNEPA Photosystem I reaction center subunit IX
           OS=Gnetum parvifolium GN=psaJ PE=3 SV=1
          Length = 43

 Score = 60.8 bits (146), Expect = 5e-09
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           MQ +K YLSTAPV+AT WFGLLAGLLIEINRFF
Sbjct: 1   MQDIKTYLSTAPVLATFWFGLLAGLLIEINRFF 33


>sp|Q8WI01|PSAJ_PSINU Photosystem I reaction center subunit IX
           OS=Psilotum nudum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 60.5 bits (145), Expect = 6e-09
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           MQ VK YLSTAPV+AT+WFG LAGLLIEINRFF
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFF 33


>sp|Q6YXM2|PSAJ_PHYPA Photosystem I reaction center subunit IX
           OS=Physcomitrella patens GN=psaJ PE=3 SV=1
          Length = 41

 Score = 60.5 bits (145), Expect = 6e-09
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           MQ VK YLSTAPV+AT+WFG LAGLLIEINRFF
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFF 33


>sp|P12191|PSAJ_MARPO Photosystem I reaction center subunit IX
           OS=Marchantia polymorpha GN=psaJ PE=3 SV=1
          Length = 42

 Score = 60.5 bits (145), Expect = 6e-09
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           MQ VK YLSTAPV+AT+WFG LAGLLIEINRFF
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFF 33


>sp|A2T353|PSAJ_ANGEV Photosystem I reaction center subunit IX
           OS=Angiopteris evecta GN=psaJ PE=3 SV=1
          Length = 44

 Score = 60.5 bits (145), Expect = 6e-09
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           MQ VK YLSTAPV+AT+WFG LAGLLIEINRFF
Sbjct: 1   MQDVKTYLSTAPVLATLWFGFLAGLLIEINRFF 33


>sp|Q32RT6|PSAJ_STAPU Photosystem I reaction center subunit IX
           OS=Staurastrum punctulatum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 60.1 bits (144), Expect = 8e-09
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           MQ VK YLSTAPV+A IWFG+LAGLLIEINRFF
Sbjct: 1   MQDVKTYLSTAPVLAAIWFGILAGLLIEINRFF 33


>sp|Q32RH5|PSAJ_ZYGCR Photosystem I reaction center subunit IX
           OS=Zygnema circumcarinatum GN=psaJ PE=3 SV=1
          Length = 42

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 27/33 (81%), Positives = 30/33 (90%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           MQ+VK YLSTAPV+A IWF +LAGLLIEINRFF
Sbjct: 1   MQYVKTYLSTAPVLAAIWFAILAGLLIEINRFF 33
tr_hit_id B7ZI94
Definition tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum parvifolium
Align length 33
Score (bit) 60.8
E-value 5.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948126|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_H21, 5'
         (585 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum parvif...    61   5e-08
tr|B7ZIH4|B7ZIH4_EPHEU Photosystem I subunit IX OS=Ephedra equis...    58   3e-07
tr|B3IWG8|B3IWG8_TAKLE Photosystem I subunit IX OS=Takakia lepid...    58   3e-07
tr|Q4FFL9|Q4FFL9_GINBI Photosystem I subunit IX (Fragment) OS=Gi...    58   4e-07
tr|A9QB35|A9QB35_9SPER Photosystem I subunit IX (Fragment) OS=Cy...    58   4e-07
tr|B7ZI29|B7ZI29_WELMI Photosystem I subunit IX OS=Welwitschia m...    57   8e-07
tr|Q4FFL5|Q4FFL5_9ASPA Photosystem I subunit IX (Fragment) OS=Yu...    55   2e-06
tr|B6RRE9|B6RRE9_9CARY PSI reaction centre subunit IX OS=Heliosp...    55   2e-06
tr|B7T458|B7T458_9ROSI Photosystem I subunit IX OS=Pelargonium c...    55   3e-06
tr|B7T3J5|B7T3J5_9ROSI Photosystem I subunit IX OS=Geranium palm...    55   3e-06
tr|B7T3C4|B7T3C4_9ROSI Photosystem I subunit IX OS=Geranium macr...    55   3e-06
tr|B7T354|B7T354_9ROSI Photosystem I subunit IX OS=Geranium caro...    55   3e-06
tr|Q06R45|Q06R45_9LAMI PSI reaction center subunit IX OS=Forsyth...    54   5e-06
tr|Q06R19|Q06R19_9LAMI PSI reaction center subunit IX OS=Jasminu...    54   5e-06
tr|Q06QZ2|Q06QZ2_9LAMI PSI reaction center subunit IX OS=Jasminu...    54   5e-06
tr|Q06QW6|Q06QW6_9LAMI PSI reaction center subunit IX OS=Jasminu...    54   5e-06
tr|Q06QT7|Q06QT7_9LAMI PSI reaction center subunit IX OS=Menodor...    54   5e-06
tr|B7T2Y3|B7T2Y3_EROTE Photosystem I subunit IX OS=Erodium texan...    54   5e-06
tr|B7T2R2|B7T2R2_9ROSI Photosystem I subunit IX OS=Erodium chrys...    54   5e-06
tr|B2D073|B2D073_OLEEU Photosystem II protein J OS=Olea europaea...    54   5e-06
tr|B0LP54|B0LP54_9CARY PSI reaction centre subunit IX OS=Silene ...    54   5e-06
tr|B0LP33|B0LP33_9CARY PSI reaction centre subunit IX OS=Silene ...    54   5e-06
tr|A7NVL0|A7NVL0_VITVI PSI reaction centre subunit IX OS=Vitis v...    54   5e-06
tr|B0LP12|B0LP12_9CARY PSI reaction centre subunit IX OS=Silene ...    54   6e-06
tr|B0LNZ4|B0LNZ4_9CARY PSI reaction centre subunit IX OS=Silene ...    54   6e-06
tr|B0LNX0|B0LNX0_9CARY PSI reaction centre subunit IX OS=Silene ...    54   6e-06
tr|B0LNU9|B0LNU9_9CARY PSI reaction centre subunit IX OS=Silene ...    54   6e-06
tr|B0LNS9|B0LNS9_9CARY PSI reaction centre subunit IX OS=Silene ...    54   6e-06
tr|B0LNQ7|B0LNQ7_SILLA PSI reaction centre subunit IX OS=Silene ...    54   6e-06
tr|B0LNP3|B0LNP3_SILCO PSI reaction centre subunit IX OS=Silene ...    54   6e-06

>tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum
           parvifolium GN=psaJ PE=4 SV=1
          Length = 43

 Score = 60.8 bits (146), Expect = 5e-08
 Identities = 28/33 (84%), Positives = 30/33 (90%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           MQ +K YLSTAPV+AT WFGLLAGLLIEINRFF
Sbjct: 1   MQDIKTYLSTAPVLATFWFGLLAGLLIEINRFF 33


>tr|B7ZIH4|B7ZIH4_EPHEU Photosystem I subunit IX OS=Ephedra
           equisetina GN=psaJ PE=4 SV=1
          Length = 43

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 26/33 (78%), Positives = 30/33 (90%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           MQ++K YLSTAPV+AT+WFG LAG LIEINRFF
Sbjct: 1   MQYIKKYLSTAPVLATLWFGSLAGFLIEINRFF 33


>tr|B3IWG8|B3IWG8_TAKLE Photosystem I subunit IX OS=Takakia
           lepidozioides GN=psaJ PE=4 SV=1
          Length = 42

 Score = 58.2 bits (139), Expect = 3e-07
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           MQ VK YLSTAPV+AT+W G LAGLLIEINRFF
Sbjct: 1   MQDVKTYLSTAPVLATLWLGFLAGLLIEINRFF 33


>tr|Q4FFL9|Q4FFL9_GINBI Photosystem I subunit IX (Fragment)
           OS=Ginkgo biloba GN=psaJ PE=4 SV=1
          Length = 44

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 26/33 (78%), Positives = 30/33 (90%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           M+ +KIYLS APV+AT+WFG LAGLLIEINRFF
Sbjct: 1   MRDIKIYLSVAPVLATLWFGSLAGLLIEINRFF 33


>tr|A9QB35|A9QB35_9SPER Photosystem I subunit IX (Fragment) OS=Cycas
           micronesica GN=psaJ PE=4 SV=1
          Length = 44

 Score = 57.8 bits (138), Expect = 4e-07
 Identities = 26/33 (78%), Positives = 30/33 (90%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           M+ +K YLSTAPV+AT+WFG LAGLLIEINRFF
Sbjct: 1   MRDIKTYLSTAPVLATLWFGSLAGLLIEINRFF 33


>tr|B7ZI29|B7ZI29_WELMI Photosystem I subunit IX OS=Welwitschia
           mirabilis GN=psaJ PE=4 SV=1
          Length = 44

 Score = 57.0 bits (136), Expect = 8e-07
 Identities = 26/33 (78%), Positives = 29/33 (87%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           MQ +K YLSTAPV+AT+WF  LAGLLIEINRFF
Sbjct: 1   MQDIKTYLSTAPVLATLWFSSLAGLLIEINRFF 33


>tr|Q4FFL5|Q4FFL5_9ASPA Photosystem I subunit IX (Fragment) OS=Yucca
           schidigera GN=psaJ PE=4 SV=1
          Length = 44

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           MQ +K YLSTAPV+ T+WFG LAGLLIEINR F
Sbjct: 1   MQDIKTYLSTAPVLTTLWFGSLAGLLIEINRLF 33


>tr|B6RRE9|B6RRE9_9CARY PSI reaction centre subunit IX
           OS=Heliosperma alpestre GN=psaJ PE=4 SV=1
          Length = 46

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 24/33 (72%), Positives = 30/33 (90%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           M+++K YLS APV++T+WFG LAGLLIEINRFF
Sbjct: 1   MRNIKTYLSVAPVLSTLWFGSLAGLLIEINRFF 33


>tr|B7T458|B7T458_9ROSI Photosystem I subunit IX OS=Pelargonium
           cotyledonis GN=psaJ PE=4 SV=1
          Length = 44

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 25/33 (75%), Positives = 29/33 (87%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           M+ +K YLS APV++TIWFG LAGLLIEINRFF
Sbjct: 1   MRDLKTYLSAAPVLSTIWFGALAGLLIEINRFF 33


>tr|B7T3J5|B7T3J5_9ROSI Photosystem I subunit IX OS=Geranium
           palmatum GN=psaJ PE=4 SV=1
          Length = 44

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = +2

Query: 485 MQHVKIYLSTAPVVATIWFGLLAGLLIEINRFF 583
           M+ +K YLS APV++T+WFG LAGLLIEINRFF
Sbjct: 1   MRDLKTYLSAAPVISTLWFGALAGLLIEINRFF 33