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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948165
Clone id TST38A01NGRL0002_J13
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_J13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CAACCTCTTCTCTCCTCAGCTCCTTCACTATGTTCTGTGACTCTCTCCCCTTCTACTACA
CCGATGCCAACATGGGGTTCGCCTCCTCGCCCTCACCGCGGTCGATGGAACATACCCTCT
ACCCCATCTTCGAAACAGATGAAGAAGGCAAAGACTCTGATGATGATGATCAGGATGATG
AAGATGAGGACTTCAGTGGTGCTTTTAATGCGCCCTTTCTCCGCTTCTTCAAGTCTTGCT
TCATCCAATTTGCGTATATGATGCCTGTAGACAAGGCGCTCAAATCTCCGCCATCATCGC
CCCGAGCGAACACAGCGAATGTTGGATAGATAGACAGGTCGGTTTGTCGATGGTGGATGT
GTGGCCAAAGCCAGAGTAAGAGCACGATTGCACGTGTTCTGACACATTTGGTCGTGTATA
CAGATGCTCTTTGTCCTCTGCTTACTTTCTTGTACATTTGTATTAACTTTACACCATTGA
TTCTTGAGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q54Y90
Definition sp|Q54Y90|Y0133_DICDI Probable serine/threonine-protein kinase DDB_G0278665 OS=Dictyostelium discoideum
Align length 50
Score (bit) 31.2
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948165|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_J13, 5'
         (491 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54Y90|Y0133_DICDI Probable serine/threonine-protein kinase D...    31   2.7  
sp|Q8N9B5|JMY_HUMAN Junction-mediating and -regulatory protein O...    31   3.5  
sp|Q8IYN6|F100B_HUMAN Protein FAM100B OS=Homo sapiens GN=FAM100B...    31   3.5  
sp|Q9UTE7|MSS1_SCHPO tRNA modification GTPase mss1, mitochondria...    30   4.5  
sp|Q9QXM1|JMY_MOUSE Junction-mediating and -regulatory protein O...    30   4.5  
sp|Q8BQH4|F100B_MOUSE Protein FAM100B OS=Mus musculus GN=Fam100b...    30   4.5  
sp|Q9P286|PAK7_HUMAN Serine/threonine-protein kinase PAK 7 OS=Ho...    30   5.9  
sp|P03191|EAD_EBV Early antigen protein D OS=Epstein-Barr virus ...    30   5.9  
sp|Q15772|SPEG_HUMAN Striated muscle preferentially expressed pr...    30   7.8  
sp|Q9NPR2|SEM4B_HUMAN Semaphorin-4B OS=Homo sapiens GN=SEMA4B PE...    30   7.8  
sp|Q8CHU3|EPN2_MOUSE Epsin-2 OS=Mus musculus GN=Epn2 PE=1 SV=1         30   7.8  

>sp|Q54Y90|Y0133_DICDI Probable serine/threonine-protein kinase
           DDB_G0278665 OS=Dictyostelium discoideum GN=DDB_G0278665
           PE=3 SV=1
          Length = 1090

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 10  LSSAPSLCSVTLSPSTTPMPTWGSPPRPHRGRWNIPST-PSSKQMKKAKT 156
           LSS+PS  S+T+S ST        PP P +   NI ST P+SK +   +T
Sbjct: 630 LSSSPSNSSLTMSSSTP-----NQPPTPTQSNLNIVSTSPTSKPIVPLRT 674


>sp|Q8N9B5|JMY_HUMAN Junction-mediating and -regulatory protein
           OS=Homo sapiens GN=JMY PE=1 SV=2
          Length = 988

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 4   PLLSSAPSLCSVTLSPSTTPMPTWGSPPRP 93
           PLL++    CSVT++P  +P+P    PP P
Sbjct: 787 PLLNNNLEPCSVTINPLPSPLPPTPPPPPP 816


>sp|Q8IYN6|F100B_HUMAN Protein FAM100B OS=Homo sapiens GN=FAM100B
           PE=1 SV=1
          Length = 164

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 7   LLSSAPSLCSVTLSPSTTPMPTWGSPPRPHRGRWNIPSTPSS 132
           L SS   + +   SP     P W S P  H+  W  PS+P++
Sbjct: 91  LQSSNSPMTAAACSPPANFSPFWASSPPSHQAPWIPPSSPTT 132


>sp|Q9UTE7|MSS1_SCHPO tRNA modification GTPase mss1, mitochondrial
           OS=Schizosaccharomyces pombe GN=mss1 PE=2 SV=1
          Length = 496

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 207 NAPFLRFFKSCFIQFAYMMPVDKALKSPPSS 299
           N  FL  F++CF +F + +P   AL +PP +
Sbjct: 5   NRVFLNTFQACFRRFVHQIPTIYALSTPPGT 35


>sp|Q9QXM1|JMY_MOUSE Junction-mediating and -regulatory protein
           OS=Mus musculus GN=Jmy PE=1 SV=1
          Length = 983

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 4   PLLSSA-PSLCSVTLSPSTTPMPTWGSPPRP 93
           PLL+S  P  CSVT+ P   P+P    PP P
Sbjct: 778 PLLTSIDPKPCSVTIDPLPPPLPPTPPPPPP 808


>sp|Q8BQH4|F100B_MOUSE Protein FAM100B OS=Mus musculus GN=Fam100b
           PE=2 SV=1
          Length = 164

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 13  SSAPSLCSVTLSPSTTPMPTWGSPPRPHRGRWNIPSTPSS 132
           SS+  + +V  SP     P W + P  H+  W  PS+P++
Sbjct: 94  SSSSPMAAVACSPPANFSPFWAASPPNHQVPWIPPSSPNT 133


>sp|Q9P286|PAK7_HUMAN Serine/threonine-protein kinase PAK 7 OS=Homo
           sapiens GN=PAK7 PE=1 SV=1
          Length = 719

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 10  LSSAPSLCSVTLSPSTTPMPTWGSPPRPHRGRWNIPSTPSSKQMKKAKTL 159
           +S+A  L S++LS ST P P+WGS           PS  S +Q + A  L
Sbjct: 395 ISTASYLSSLSLSSSTYPPPSWGSSSDQQ------PSRVSHEQFRAALQL 438


>sp|P03191|EAD_EBV Early antigen protein D OS=Epstein-Barr virus
           (strain B95-8) GN=BMRF1 PE=1 SV=1
          Length = 404

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = +1

Query: 1   QPLLSSAPSLCSVTLSPSTTP-----MPTWGSPPRPHRGRWNIPSTPSSKQMKK 147
           QPL +        T+SPS +P      PTW SP RP      IPS  S+  +++
Sbjct: 318 QPLGTGLQQRPRHTVSPSPSPPPPPRTPTWESPARPETPSPAIPSHSSNTALER 371


>sp|Q15772|SPEG_HUMAN Striated muscle preferentially expressed protein
            kinase OS=Homo sapiens GN=SPEG PE=1 SV=4
          Length = 3267

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 13/46 (28%)
 Frame = +1

Query: 4    PLLSSAPSLCSVTLSPSTTPMPTW-------------GSPPRPHRG 102
            PL  +AP+  SVT+SPS+ P P                +PPR HRG
Sbjct: 2806 PLAPAAPTPPSVTVSPSSPPTPPSQALSSLKAVGPPPQTPPRRHRG 2851


>sp|Q9NPR2|SEM4B_HUMAN Semaphorin-4B OS=Homo sapiens GN=SEMA4B PE=1
           SV=3
          Length = 832

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +1

Query: 22  PSLCSVTLSPSTTPMPTWGSPPRP--HRGRWNIPSTPSSKQM 141
           P  C V L P T P+   G P  P  HRG  ++  +P   ++
Sbjct: 753 PKTCPVVLPPETRPLNGLGPPSTPLDHRGYQSLSDSPPGSRV 794
tr_hit_id Q05DF2
Definition tr|Q05DF2|Q05DF2_HUMAN SF3A2 protein (Fragment) OS=Homo sapiens
Align length 32
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948165|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_J13, 5'
         (491 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q05DF2|Q05DF2_HUMAN SF3A2 protein (Fragment) OS=Homo sapiens ...    34   3.2  
tr|A5BDI9|A5BDI9_VITVI Putative uncharacterized protein OS=Vitis...    33   5.5  
tr|B7PEB1|B7PEB1_IXOSC Sdk-P1, putative OS=Ixodes scapularis GN=...    33   5.5  
tr|Q5KAQ0|Q5KAQ0_CRYNE Rab family GTP-binding protein, putative ...    33   5.5  
tr|A5BMY8|A5BMY8_VITVI Putative uncharacterized protein OS=Vitis...    33   9.3  
tr|B6KE88|B6KE88_TOXGO Putative uncharacterized protein OS=Toxop...    33   9.3  

>tr|Q05DF2|Q05DF2_HUMAN SF3A2 protein (Fragment) OS=Homo sapiens
           GN=SF3A2 PE=2 SV=1
          Length = 481

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +1

Query: 58  TPMPTWGSPPRPHRGRWNIPSTPSSKQMKKAK 153
           TPMP    PP P  G  NIP  P  K+ KK K
Sbjct: 439 TPMPPMLRPPLPSEGPGNIPPPPPKKKKKKKK 470


>tr|A5BDI9|A5BDI9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019773 PE=4 SV=1
          Length = 138

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 16  SAPSLCSVTLSP-STTPMPTWGSPPRPHRGRWNIPSTPSS 132
           SAP+    T+SP ++TP PT GSPP P     + P+T +S
Sbjct: 57  SAPAPAPSTVSPPASTPSPTSGSPPAPPTSPASAPTTGAS 96


>tr|B7PEB1|B7PEB1_IXOSC Sdk-P1, putative OS=Ixodes scapularis
            GN=IscW_ISCW003491 PE=4 SV=1
          Length = 1754

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +1

Query: 13   SSAPSLCSVTLSPSTTPMPTWGSPPRPHRG 102
            S+ PS  S   + STT + TWG  PR HRG
Sbjct: 957  SAGPSQVSAKATSSTTVVVTWGPVPRAHRG 986


>tr|Q5KAQ0|Q5KAQ0_CRYNE Rab family GTP-binding protein, putative
           OS=Cryptococcus neoformans GN=CNBJ2580 PE=4 SV=1
          Length = 885

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 13  SSAPSLCSVTLSPSTTPMP----TWGSPPRPHRGRWNIPSTPSSKQMKKAKT 156
           S  PS   V  S ST P P    + G PPRP R +   P  P S +M ++++
Sbjct: 238 SGTPSQARVKSSSSTDPKPPRPKSMGPPPRPRRSQTAYPHGPVSVRMAESRS 289


>tr|A5BMY8|A5BMY8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_008035 PE=4 SV=1
          Length = 138

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 16  SAPSLCSVTLSP-STTPMPTWGSPPRPHRGRWNIPSTPSS 132
           SAP+    T+SP ++TP PT GSPP P     + P+T +S
Sbjct: 57  SAPAPAPSTVSPPASTPSPTSGSPPAPPTSPASPPTTGAS 96


>tr|B6KE88|B6KE88_TOXGO Putative uncharacterized protein OS=Toxoplasma
            gondii ME49 GN=TGME49_024870 PE=4 SV=1
          Length = 8474

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 18/33 (54%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -2

Query: 379  LLWL--WPHIHHRQTDLSIYPTFAVFARGDDGG 287
            LLWL  WPH    + DLS   TFA FA G D G
Sbjct: 2304 LLWLLRWPHTSETEDDLSA--TFASFAGGSDAG 2334