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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948173
Clone id TST38A01NGRL0002_J21
Library
Length 703
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_J21. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CCCTGTGCCCGTCCTCCTCATCAGCAGCTTCTTCCTTGAAGTCCTGCCCCTCTCTCTCCT
TCGCCCCCTCCAATGGCTCTCGCCTTGTTTGCATGGCCACTAAGAAGGTCTCTTCTCGGC
CCTCCTCCGGCAAGAAGTCGTGGCTTCCCGGGGTTAGGGGAGGTGGCAACCTTGTGGATC
CTGAATGGCTTGATGGATCGCTTCCCGGCGACTATGGCTTTGATCCCCTTGGACTTGGAA
AGGATCCAGCTGCCTTGAAATGGTACCGTGAGGCTGAAATCATCCATGGAAGATGGGCAA
TGGCAGCTGTGGTGGGAATCTTTGTGGGGCAAGCATGGAGTGGAGTCCCCTGGTTCGAAG
CTGGAGCTCAACCTGGAGCAGTTGCTCCCTTCTCTTTCGGAACGCTGCTGGGTACTCAAC
TGTTGTTGATGGGATGGGTTGAGAGCAAGAGATGGGTTGACTTCTTTGACACTGGCTCCC
AATCTATTGAATGGGCTACCCCTTGGTCTCGTACATCAGAAAATTTTGCAAATGCCACAG
GTCTCCAAGGATATCCTGGTGGCAAGTTCTTCGACCCTCTTGCGCTTGCTGGTGAGTTGA
AGAATGGAAAGTACACTCCTGATTACTCTAAGTTGGAGAGGTTACAGCTTGCAGAGATCA
AGCATGCTCGCCTTGCCATGGTGGCTATGCTCATCTTCTACTT
■■Homology search results ■■ -
sp_hit_id P27524
Definition sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum
Align length 200
Score (bit) 342.0
E-value 1.0e-93
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948173|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_J21, 5'
         (703 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A, c...   342   1e-93
sp|P27525|CB4B_SOLLC Chlorophyll a-b binding protein CP24 10B, c...   335   1e-91
sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24, chloro...   333   7e-91
sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplas...   124   6e-28
sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7, chloropl...   116   1e-25
sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2, chl...   103   9e-22
sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1, chl...   103   9e-22
sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4, chloropla...    96   2e-19
sp|P27521|CB24_ARATH Chlorophyll a-b binding protein 4, chloropl...    96   2e-19
sp|Q93WD2|CB29_CHLRE Chlorophyll a-b binding protein CP29 OS=Chl...    95   4e-19
sp|Q9S7W1|CB4C_ARATH Chlorophyll a-b binding protein CP29.3, chl...    94   5e-19
sp|P12360|CB11_SOLLC Chlorophyll a-b binding protein 6A, chlorop...    92   4e-18
sp|Q32904|CB23_PEA Chlorophyll a-b binding protein 3, chloroplas...    86   2e-16
sp|Q36718|CB120_HORVU Chlorophyll a-b binding protein 1B-20, chl...    86   3e-16
sp|P27523|CB23_HORVU Chlorophyll a-b binding protein of LHCII ty...    84   1e-15
sp|P27489|CB23_SOLLC Chlorophyll a-b binding protein 13, chlorop...    80   8e-15
sp|P27522|CB13_SOLLC Chlorophyll a-b binding protein 8, chloropl...    80   1e-14
sp|Q9SDM1|CB121_HORVU Chlorophyll a-b binding protein 1B-21, chl...    77   7e-14
sp|P27517|CB2_DUNTE Chlorophyll a-b binding protein of LHCII typ...    74   8e-13
sp|P22686|CB2_CHLMO Chlorophyll a-b binding protein of LHCII typ...    74   1e-12
sp|P12471|CB21_SOYBN Chlorophyll a-b binding protein, chloroplas...    73   1e-12
sp|P07369|CB2G_SOLLC Chlorophyll a-b binding protein 3C, chlorop...    72   2e-12
sp|Q9XF89|CB26_ARATH Chlorophyll a-b binding protein CP26, chlor...    72   2e-12
sp|P14273|CB2_CHLRE Chlorophyll a-b binding protein of LHCII typ...    72   3e-12
sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplast...    72   4e-12
sp|P08963|CB22_HORVU Chlorophyll a-b binding protein 2, chloropl...    72   4e-12
sp|Q10HD0|CB23_ORYSJ Chlorophyll a-b binding protein, chloroplas...    71   5e-12
sp|A2XJ35|CB23_ORYSI Chlorophyll a-b binding protein, chloroplas...    71   5e-12
sp|P12331|CB22_ORYSJ Chlorophyll a-b binding protein 2, chloropl...    71   6e-12
sp|P12328|CB21_LEMGI Chlorophyll a-b binding protein of LHCII ty...    71   6e-12

>sp|P27524|CB4A_SOLLC Chlorophyll a-b binding protein CP24 10A,
           chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3
           SV=1
          Length = 256

 Score =  342 bits (876), Expect = 1e-93
 Identities = 157/200 (78%), Positives = 172/200 (86%)
 Frame = +3

Query: 102 KKVSSRPSSGKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAALKWYREAEI 281
           K+ +   ++ KKSW+P VRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPA LKWYREAE+
Sbjct: 42  KRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAEL 101

Query: 282 IHGRWAMAAVVGIFVGQAWSGVPWFEAGAQPGAVAPFSFXXXXXXXXXXMGWVESKRWVD 461
           IHGRWAMAAV+GIFVGQAWSG+PWFEAGA PGA+APFSF          MGWVESKRWVD
Sbjct: 102 IHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVD 161

Query: 462 FFDTGSQSIEWATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKYTPDYSKLER 641
           FFD  SQS+EWATPWS+T+ENFAN TG QGYPGGKFFDPLALAG L NG Y PD  KLER
Sbjct: 162 FFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLER 221

Query: 642 LQLAEIKHARLAMVAMLIFY 701
           L++AEIKHARLAM+AMLIFY
Sbjct: 222 LKVAEIKHARLAMLAMLIFY 241


>sp|P27525|CB4B_SOLLC Chlorophyll a-b binding protein CP24 10B,
           chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3
           SV=1
          Length = 256

 Score =  335 bits (859), Expect = 1e-91
 Identities = 154/198 (77%), Positives = 170/198 (85%)
 Frame = +3

Query: 108 VSSRPSSGKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAALKWYREAEIIH 287
           V++   + KKSW+P V+ GGNLVDPEWLDGSLPGD+GFDPLGLGKDPA LKWYREAE+IH
Sbjct: 44  VAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIH 103

Query: 288 GRWAMAAVVGIFVGQAWSGVPWFEAGAQPGAVAPFSFXXXXXXXXXXMGWVESKRWVDFF 467
           GRWAMAAV+GIFVGQAWSG+PWFEAGA PGA+APFSF          MGWVESKRWVDFF
Sbjct: 104 GRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF 163

Query: 468 DTGSQSIEWATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKYTPDYSKLERLQ 647
           D  SQSI+WATPWS+T+ENFAN TG QGYPGGKFFDPLALAG L NG Y PD  KLERL+
Sbjct: 164 DNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLK 223

Query: 648 LAEIKHARLAMVAMLIFY 701
           LAEIKH+RLAM+AMLIFY
Sbjct: 224 LAEIKHSRLAMLAMLIFY 241


>sp|P36494|CB4_SPIOL Chlorophyll a-b binding protein CP24,
           chloroplastic OS=Spinacia oleracea PE=2 SV=1
          Length = 261

 Score =  333 bits (853), Expect = 7e-91
 Identities = 151/198 (76%), Positives = 170/198 (85%)
 Frame = +3

Query: 108 VSSRPSSGKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAALKWYREAEIIH 287
           V +  ++ KKSW+P V+GGGN +DPEWLDGSLPGD+GFDPLGLGKDPA LKWYREAE+IH
Sbjct: 49  VVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIH 108

Query: 288 GRWAMAAVVGIFVGQAWSGVPWFEAGAQPGAVAPFSFXXXXXXXXXXMGWVESKRWVDFF 467
           GRWAM AV+GIFVGQAW+G+PWFEAGA PGAVAPFSF          MGWVESKRWVDFF
Sbjct: 109 GRWAMLAVLGIFVGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFF 168

Query: 468 DTGSQSIEWATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKYTPDYSKLERLQ 647
           D  SQS+EWATPWSRT+ENF+N+TG QGYPGGKFFDPL+LAG + NG Y PD  KLERL+
Sbjct: 169 DPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLK 228

Query: 648 LAEIKHARLAMVAMLIFY 701
           LAEIKHARLAM+AMLIFY
Sbjct: 229 LAEIKHARLAMLAMLIFY 246


>sp|P13869|CB12_PETHY Chlorophyll a-b binding protein, chloroplastic
           OS=Petunia hybrida PE=2 SV=1
          Length = 270

 Score =  124 bits (310), Expect = 6e-28
 Identities = 79/212 (37%), Positives = 108/212 (50%), Gaps = 6/212 (2%)
 Frame = +3

Query: 75  GSRLVCMATKKVSSRPSSGKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAA 254
           GSR V  A   V++ P   +  W PG         PEWLDGSLPGD+GFDPLGLG DP +
Sbjct: 50  GSRSV--AVSAVAADPD--RPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPES 99

Query: 255 LKWYREAEIIHGRWAMAAVVGIFVGQAWSGV------PWFEAGAQPGAVAPFSFXXXXXX 416
           LKW  +AE++H RWAM    GIF+ +  + +       W+ AG Q       +       
Sbjct: 100 LKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTL---FVI 156

Query: 417 XXXXMGWVESKRWVDFFDTGSQSIEWATPWSRTSENFANATGLQGYPGGKFFDPLALAGE 596
               +GW E +RW D    G  + +   P      N    T + GYPGG +FDPL     
Sbjct: 157 ELVLIGWAEGRRWADIIKPGCVNTDPIFP-----NNKLTGTDV-GYPGGLWFDPLGW--- 207

Query: 597 LKNGKYTPDYSKLERLQLAEIKHARLAMVAML 692
              G  +P  +K++ L+  EIK+ RLAM+A++
Sbjct: 208 ---GSGSP--AKIKELRTKEIKNGRLAMLAVM 234


>sp|P10708|CB12_SOLLC Chlorophyll a-b binding protein 7,
           chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1
          Length = 270

 Score =  116 bits (291), Expect = 1e-25
 Identities = 69/190 (36%), Positives = 97/190 (51%), Gaps = 6/190 (3%)
 Frame = +3

Query: 141 WLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAALKWYREAEIIHGRWAMAAVVGI 320
           W PG         P WLDGSLPGD+GFDPLGL  DP +L+W ++AE++H RWAM    GI
Sbjct: 68  WFPGS------TPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGI 121

Query: 321 FVGQAWSGV------PWFEAGAQPGAVAPFSFXXXXXXXXXXMGWVESKRWVDFFDTGSQ 482
           F+ +  + +       W+ AG Q       +           +GW E +RW D    G  
Sbjct: 122 FIPELLTKIGILNTPSWYTAGEQEYFTDTTTL---FIVELVLIGWAEGRRWADIIKPGCV 178

Query: 483 SIEWATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKYTPDYSKLERLQLAEIK 662
           + +   P      N    T + GYPGG +FDPL        G  +P  +K++ L+  EIK
Sbjct: 179 NTDPIFP-----NNKLTGTDV-GYPGGLWFDPLGW------GSGSP--AKIKELRTKEIK 224

Query: 663 HARLAMVAML 692
           + RLAM+A++
Sbjct: 225 NGRLAMLAVM 234


>sp|Q9XF88|CB4B_ARATH Chlorophyll a-b binding protein CP29.2,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1
           SV=1
          Length = 287

 Score =  103 bits (257), Expect = 9e-22
 Identities = 89/268 (33%), Positives = 110/268 (41%), Gaps = 58/268 (21%)
 Frame = +3

Query: 69  SNGSRLVC---MATKKVSSRPS----SGKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDP 227
           SN SR        TKK S + +    S +  W PG +       PE+LDGSL GDYGFDP
Sbjct: 24  SNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKS------PEYLDGSLVGDYGFDP 77

Query: 228 LGLGK--------------------------------DPAA-----------LKWYREAE 278
            GLGK                                DP +           L+ +RE E
Sbjct: 78  FGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECE 137

Query: 279 IIHGRWAMAAVVGIFVGQAWSGVPWFEAG--------AQPGAVAPFSFXXXXXXXXXXMG 434
           +IHGRWAM A +G    +  +GV W +AG        +  G   PFS           +G
Sbjct: 138 LIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIG 197

Query: 435 WVESKRWVDFFDTGSQSIEWATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKY 614
           ++E +R  +                  SE        + YPGGKFFDPL LA        
Sbjct: 198 YIEFQRNAEL----------------DSEK-------RLYPGGKFFDPLGLAS------- 227

Query: 615 TPDYSKLERLQLAEIKHARLAMVAMLIF 698
             D  K  +LQLAEIKHARLAMV  L F
Sbjct: 228 --DPVKKAQLQLAEIKHARLAMVGFLGF 253



 Score = 38.1 bits (87), Expect = 0.046
 Identities = 21/47 (44%), Positives = 24/47 (51%)
 Frame = +3

Query: 204 PGDYGFDPLGLGKDPAALKWYREAEIIHGRWAMAAVVGIFVGQAWSG 344
           PG   FDPLGL  DP      + AEI H R AM   +G  V  A +G
Sbjct: 215 PGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATG 261


>sp|Q07473|CB4A_ARATH Chlorophyll a-b binding protein CP29.1,
           chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=2
           SV=1
          Length = 290

 Score =  103 bits (257), Expect = 9e-22
 Identities = 84/257 (32%), Positives = 105/257 (40%), Gaps = 58/257 (22%)
 Frame = +3

Query: 102 KKVSSRPSSGKKS-------WLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAALK 260
           KK ++   S KK+       W PG       + P+WLDGSL GDYGFDP GLGK    L+
Sbjct: 38  KKKAAPKKSAKKTVTTDRPLWYPGA------ISPDWLDGSLVGDYGFDPFGLGKPAEYLQ 91

Query: 261 W-------------------------------------------YREAEIIHGRWAMAAV 311
           +                                           +RE E+IHGRWAM A 
Sbjct: 92  FDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLAT 151

Query: 312 VGIFVGQAWSGVPWFEAG--------AQPGAVAPFSFXXXXXXXXXXMGWVESKRWVDFF 467
           +G    +  +GV W +AG        +  G   PFS           +G++E +R  +  
Sbjct: 152 LGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQRNAEL- 210

Query: 468 DTGSQSIEWATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKYTPDYSKLERLQ 647
                           SE        + YPGGKFFDPL LA          D  K  +LQ
Sbjct: 211 ---------------DSEK-------RLYPGGKFFDPLGLAA---------DPEKTAQLQ 239

Query: 648 LAEIKHARLAMVAMLIF 698
           LAEIKHARLAMVA L F
Sbjct: 240 LAEIKHARLAMVAFLGF 256



 Score = 39.3 bits (90), Expect = 0.021
 Identities = 22/47 (46%), Positives = 25/47 (53%)
 Frame = +3

Query: 204 PGDYGFDPLGLGKDPAALKWYREAEIIHGRWAMAAVVGIFVGQAWSG 344
           PG   FDPLGL  DP      + AEI H R AM A +G  V  A +G
Sbjct: 218 PGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATG 264


>sp|Q9SQL2|CB24_PEA Chlorophyll a-b binding protein P4,
           chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1
          Length = 252

 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 65/202 (32%), Positives = 98/202 (48%), Gaps = 6/202 (2%)
 Frame = +3

Query: 111 SSRPSSGKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAALKWYREAEIIHG 290
           S +  + K  WLPG      L  P +L GSLPGD GFDPLGL +DP  L+W+ +AE+++G
Sbjct: 46  SFKVEAKKGEWLPG------LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNG 99

Query: 291 RWAMAAVVGIFVGQAWSGV------PWFEAGAQPGAVAPFSFXXXXXXXXXXMGWVESKR 452
           RWAM  V G+ + + ++ +       W+ AG +    +  +             +VE +R
Sbjct: 100 RWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSH---YVEIRR 156

Query: 453 WVDFFDTGSQSIEWATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKYTPDYSK 632
           W D  + GS + +         + ++   G  GYPGG  F+PL          + P    
Sbjct: 157 WQDIKNPGSVNQD------PIFKQYSLPAGEVGYPGG-IFNPL---------NFAPTLEA 200

Query: 633 LERLQLAEIKHARLAMVAMLIF 698
            E+    EI + RLAM+A L F
Sbjct: 201 KEK----EIANGRLAMLAFLGF 218


>sp|P27521|CB24_ARATH Chlorophyll a-b binding protein 4,
           chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1
          Length = 251

 Score = 95.5 bits (236), Expect = 2e-19
 Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 6/207 (2%)
 Frame = +3

Query: 96  ATKKVSSRPSSGKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAALKWYREA 275
           + K  S +  + K  WLPG      L  P++L GSL GD GFDPLGL +DP  LKW+ +A
Sbjct: 42  SAKTSSFKVEAKKGEWLPG------LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQA 95

Query: 276 EIIHGRWAMAAVVGIFVGQAWSGV------PWFEAGAQPGAVAPFSFXXXXXXXXXXMGW 437
           E+++GRWAM  V G+ + + ++ +       W++AG +       S             +
Sbjct: 96  ELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA---SSSTLFVIEFILFHY 152

Query: 438 VESKRWVDFFDTGSQSIEWATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKYT 617
           VE +RW D  + GS + +         + ++   G  GYPGG  F+PL            
Sbjct: 153 VEIRRWQDIKNPGSVNQD------PIFKQYSLPKGEVGYPGG-IFNPL------------ 193

Query: 618 PDYSKLERLQLAEIKHARLAMVAMLIF 698
            +++  +  +  E+ + RLAM+A L F
Sbjct: 194 -NFAPTQEAKEKELANGRLAMLAFLGF 219


>sp|Q93WD2|CB29_CHLRE Chlorophyll a-b binding protein CP29
           OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3
          Length = 280

 Score = 94.7 bits (234), Expect = 4e-19
 Identities = 81/245 (33%), Positives = 96/245 (39%), Gaps = 52/245 (21%)
 Frame = +3

Query: 108 VSSRPSSGKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGK--------------- 242
           V  R   G   WLP      N   PEWLDGSLPGD GFDPLGL K               
Sbjct: 42  VGYRKYQGDALWLP------NTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQN 95

Query: 243 ------------------------------DPAALKWYREAEIIHGRWAMAAVVGIFVGQ 332
                                         +   L  +RE E+IHGRWAM A +G  V +
Sbjct: 96  AAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAE 155

Query: 333 AWSGVPWFEAG-------AQPGAVAPFSFXXXXXXXXXXMGWVESKRWVDFFDTGSQSIE 491
           A +GV W EAG       +  G   PFS              +    W++    G     
Sbjct: 156 ATTGVSWVEAGKVELDGASYAGLSLPFS--------------ITQLIWIEVILVG----- 196

Query: 492 WATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKYTPDYSKLERLQLAEIKHAR 671
               + R SE        + YPGG  FDPL LA E        D  +  RL+ AEIKHAR
Sbjct: 197 -GAEFYRNSETNPEK---RCYPGG-VFDPLKLASE--------DEERAFRLKTAEIKHAR 243

Query: 672 LAMVA 686
           LAMV+
Sbjct: 244 LAMVS 248
tr_hit_id A9RU32
Definition tr|A9RU32|A9RU32_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 204
Score (bit) 355.0
E-value 1.0e-96
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948173|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_J21, 5'
         (703 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RU32|A9RU32_PHYPA Predicted protein OS=Physcomitrella paten...   355   1e-96
tr|A5ASW8|A5ASW8_VITVI Putative uncharacterized protein (Chromos...   340   4e-92
tr|A9PK00|A9PK00_POPJC Putative uncharacterized protein OS=Popul...   337   6e-91
tr|A9PGD4|A9PGD4_POPTR Putative uncharacterized protein OS=Popul...   337   6e-91
tr|Q9XQB6|Q9XQB6_PHAAU Chlorophyll a/b-binding protein CP24 OS=P...   336   7e-91
tr|A9PFP4|A9PFP4_POPTR Putative uncharacterized protein OS=Popul...   335   2e-90
tr|Q0PWS6|Q0PWS6_TOBAC Chloroplast pigment-binding protein CP24 ...   334   4e-90
tr|Q9XF90|Q9XF90_ARATH Lhcb6 protein OS=Arabidopsis thaliana GN=...   329   1e-88
tr|Q9LMQ2|Q9LMQ2_ARATH F7H2.16 protein (Chlorophyll A-B binding ...   329   1e-88
tr|Q6DV17|Q6DV17_BRARP Lhcb6 protein (Fragment) OS=Brassica rapa...   327   6e-88
tr|B4FXB0|B4FXB0_MAIZE Chlorophyll a-b binding protein CP24 OS=Z...   317   5e-85
tr|B8PYF9|B8PYF9_9POAL Chloroplast a/b binding protein cab-PhE11...   316   8e-85
tr|Q7XV11|Q7XV11_ORYSJ Os04g0457000 protein OS=Oryza sativa subs...   315   1e-84
tr|A2XU61|A2XU61_ORYSI Putative uncharacterized protein OS=Oryza...   315   1e-84
tr|B6T037|B6T037_MAIZE Chlorophyll a-b binding protein CP24 OS=Z...   315   2e-84
tr|Q01JQ3|Q01JQ3_ORYSA H0523F07.10 protein OS=Oryza sativa GN=H0...   313   5e-84
tr|Q41748|Q41748_MAIZE Chlorophyll a/b-binding apoprotein CP24 O...   311   3e-83
tr|B3VV93|B3VV93_POPTN Chloroplast light-harvesting complex II p...   282   1e-74
tr|B3VV74|B3VV74_POPTN Chloroplast light-harvesting complex II p...   282   1e-74
tr|B3VV84|B3VV84_POPTN Chloroplast light-harvesting complex II p...   281   4e-74
tr|B3VV83|B3VV83_POPTN Chloroplast light-harvesting complex II p...   280   6e-74
tr|B3VV80|B3VV80_POPTN Chloroplast light-harvesting complex II p...   280   6e-74
tr|B3VV72|B3VV72_POPTN Chloroplast light-harvesting complex II p...   279   1e-73
tr|B3VV73|B3VV73_POPTN Chloroplast light-harvesting complex II p...   278   3e-73
tr|B3VV82|B3VV82_POPTN Chloroplast light-harvesting complex II p...   275   2e-72
tr|A3AUG3|A3AUG3_ORYSJ Putative uncharacterized protein OS=Oryza...   251   2e-65
tr|Q5BMR6|Q5BMR6_FRAAN Chloroplast chlorophyll a/b-binding prote...   238   3e-61
tr|B4F9J6|B4F9J6_MAIZE Putative uncharacterized protein OS=Zea m...   214   4e-54
tr|B2BFG9|B2BFG9_SCUBA Chloroplast light-harvesting complex b6 (...   206   9e-52
tr|B6TRW9|B6TRW9_MAIZE Putative uncharacterized protein OS=Zea m...   156   1e-36

>tr|A9RU32|A9RU32_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_119427 PE=4 SV=1
          Length = 219

 Score =  355 bits (912), Expect = 1e-96
 Identities = 163/204 (79%), Positives = 182/204 (89%), Gaps = 1/204 (0%)
 Frame = +3

Query: 93  MATKKVSSRPSSG-KKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAALKWYR 269
           MATKKVS+RP++G KKSW+P V+GGGNL DPEWLDGSLPGDYGFDPLGLG+DPAALKWYR
Sbjct: 1   MATKKVSARPAAGGKKSWIPAVKGGGNLTDPEWLDGSLPGDYGFDPLGLGRDPAALKWYR 60

Query: 270 EAEIIHGRWAMAAVVGIFVGQAWSGVPWFEAGAQPGAVAPFSFXXXXXXXXXXMGWVESK 449
           EAE+IHGRWAMAAVVGIFVGQ WSGVPWFEAGA P A+APFSF          MGWVE+K
Sbjct: 61  EAELIHGRWAMAAVVGIFVGQGWSGVPWFEAGADPAALAPFSFGSLLGTQLLLMGWVETK 120

Query: 450 RWVDFFDTGSQSIEWATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKYTPDYS 629
           RW+DF + G+QS+EWATPWSRT+ENF N+TGLQGYPGGKFFDPLALAG ++ G+Y PD+S
Sbjct: 121 RWIDFLNPGTQSVEWATPWSRTAENFNNSTGLQGYPGGKFFDPLALAGSVQGGQYVPDFS 180

Query: 630 KLERLQLAEIKHARLAMVAMLIFY 701
           KLERLQLAEIKHARLAMVAMLIFY
Sbjct: 181 KLERLQLAEIKHARLAMVAMLIFY 204


>tr|A5ASW8|A5ASW8_VITVI Putative uncharacterized protein (Chromosome
           chr12 scaffold_238, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00009554001 PE=4 SV=1
          Length = 257

 Score =  340 bits (873), Expect = 4e-92
 Identities = 157/190 (82%), Positives = 169/190 (88%)
 Frame = +3

Query: 132 KKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAALKWYREAEIIHGRWAMAAV 311
           KKSWLPGV+ GGNLVDPEWLDGSLPGDYGFDPLGLGKDPA LKWYREAE+IHGRWAMAAV
Sbjct: 53  KKSWLPGVKAGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 112

Query: 312 VGIFVGQAWSGVPWFEAGAQPGAVAPFSFXXXXXXXXXXMGWVESKRWVDFFDTGSQSIE 491
           VGIFVGQAWSG+PWFEAGA PGAVAPFSF          MGWVESKRWVDFF+  SQS+E
Sbjct: 113 VGIFVGQAWSGIPWFEAGAAPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFNPESQSVE 172

Query: 492 WATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKYTPDYSKLERLQLAEIKHAR 671
           WATPWSRT+ENFANATG QGYPGGKFFDPL+LAG +K+G Y PD  KLERL+LAEIKHAR
Sbjct: 173 WATPWSRTAENFANATGEQGYPGGKFFDPLSLAGTIKDGVYIPDVEKLERLKLAEIKHAR 232

Query: 672 LAMVAMLIFY 701
           +AM+AMLIFY
Sbjct: 233 IAMLAMLIFY 242


>tr|A9PK00|A9PK00_POPJC Putative uncharacterized protein OS=Populus
           jackii PE=2 SV=1
          Length = 257

 Score =  337 bits (863), Expect = 6e-91
 Identities = 154/190 (81%), Positives = 166/190 (87%)
 Frame = +3

Query: 132 KKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAALKWYREAEIIHGRWAMAAV 311
           KKSW+P V+GGG+ VDPEWLDGSLPGDYGFDPLGLGKDPA LKWYREAE+IHGRWAMAAV
Sbjct: 53  KKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 112

Query: 312 VGIFVGQAWSGVPWFEAGAQPGAVAPFSFXXXXXXXXXXMGWVESKRWVDFFDTGSQSIE 491
           VGIFVGQAWSG+PWFEAGA PGA+APFSF          MGWVESKRWVDFF+  SQS+E
Sbjct: 113 VGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPESQSVE 172

Query: 492 WATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKYTPDYSKLERLQLAEIKHAR 671
           WATPWS+T+ENFANATG QGYPGGKFFDPL  AG LKNG Y PD  KLERL+LAEIKHAR
Sbjct: 173 WATPWSKTAENFANATGDQGYPGGKFFDPLGFAGTLKNGVYIPDEEKLERLKLAEIKHAR 232

Query: 672 LAMVAMLIFY 701
           LAM+AMLIFY
Sbjct: 233 LAMIAMLIFY 242


>tr|A9PGD4|A9PGD4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 257

 Score =  337 bits (863), Expect = 6e-91
 Identities = 154/190 (81%), Positives = 166/190 (87%)
 Frame = +3

Query: 132 KKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAALKWYREAEIIHGRWAMAAV 311
           KKSW+P V+GGG+ VDPEWLDGSLPGDYGFDPLGLGKDPA LKWYREAE+IHGRWAMAAV
Sbjct: 53  KKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 112

Query: 312 VGIFVGQAWSGVPWFEAGAQPGAVAPFSFXXXXXXXXXXMGWVESKRWVDFFDTGSQSIE 491
           VGIFVGQAWSG+PWFEAGA PGA+APFSF          MGWVESKRWVDFF+  SQS+E
Sbjct: 113 VGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPESQSVE 172

Query: 492 WATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKYTPDYSKLERLQLAEIKHAR 671
           WATPWS+T+ENFANATG QGYPGGKFFDPL  AG LKNG Y PD  KLERL+LAEIKHAR
Sbjct: 173 WATPWSKTAENFANATGDQGYPGGKFFDPLGFAGTLKNGVYIPDEEKLERLKLAEIKHAR 232

Query: 672 LAMVAMLIFY 701
           LAM+AMLIFY
Sbjct: 233 LAMIAMLIFY 242


>tr|Q9XQB6|Q9XQB6_PHAAU Chlorophyll a/b-binding protein CP24
           OS=Phaseolus aureus GN=CipCp24 PE=2 SV=2
          Length = 258

 Score =  336 bits (862), Expect = 7e-91
 Identities = 154/190 (81%), Positives = 167/190 (87%)
 Frame = +3

Query: 132 KKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAALKWYREAEIIHGRWAMAAV 311
           KKSW+PGVRGGGNLVDPEWLDGSLPGD+GFDPLGLGKDPA LKWYREAE+IHGRWAMAAV
Sbjct: 54  KKSWIPGVRGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 113

Query: 312 VGIFVGQAWSGVPWFEAGAQPGAVAPFSFXXXXXXXXXXMGWVESKRWVDFFDTGSQSIE 491
           +GIFVGQAWSGVPWFEAGA P A+APFSF          MGWVESKRWVDFF+  SQS+E
Sbjct: 114 LGIFVGQAWSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVE 173

Query: 492 WATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKYTPDYSKLERLQLAEIKHAR 671
           WATPWS+T+ENFANATG QGYPGGKFFDPL  AG LK+G Y PD  KLERL+LAEIKHAR
Sbjct: 174 WATPWSKTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHAR 233

Query: 672 LAMVAMLIFY 701
           +AM+AMLIFY
Sbjct: 234 IAMLAMLIFY 243


>tr|A9PFP4|A9PFP4_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 257

 Score =  335 bits (858), Expect = 2e-90
 Identities = 153/190 (80%), Positives = 167/190 (87%)
 Frame = +3

Query: 132 KKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAALKWYREAEIIHGRWAMAAV 311
           KKSW+P V+GGG+LVDPEWLDGSLPGDYGFDPLGLGKDPA LKWYREAE+IHGRWAMAAV
Sbjct: 53  KKSWIPAVKGGGSLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 112

Query: 312 VGIFVGQAWSGVPWFEAGAQPGAVAPFSFXXXXXXXXXXMGWVESKRWVDFFDTGSQSIE 491
           +GIFVGQAWSG+PWFEAGA PGA+APFSF          MGWVESKRWVDFF+  SQS+E
Sbjct: 113 LGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 172

Query: 492 WATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKYTPDYSKLERLQLAEIKHAR 671
           WATPWS+T+ENFANATG QGYPGGKFFDPL  AG LK+G Y PD  KLERL++AEIKHAR
Sbjct: 173 WATPWSKTAENFANATGDQGYPGGKFFDPLGFAGTLKDGVYIPDVEKLERLKVAEIKHAR 232

Query: 672 LAMVAMLIFY 701
           LAMVAMLIFY
Sbjct: 233 LAMVAMLIFY 242


>tr|Q0PWS6|Q0PWS6_TOBAC Chloroplast pigment-binding protein CP24
           OS=Nicotiana tabacum GN=Lhcb6 PE=2 SV=1
          Length = 257

 Score =  334 bits (856), Expect = 4e-90
 Identities = 155/210 (73%), Positives = 179/210 (85%), Gaps = 2/210 (0%)
 Frame = +3

Query: 78  SRLVCMATKK--VSSRPSSGKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPA 251
           +R+  +AT K  + +  ++ KKSW+P V+GGGNL+DPEWLDGSLPGDYGFDPLGLGKDPA
Sbjct: 33  ARIGGLATPKRCIVAAAAAPKKSWIPAVKGGGNLLDPEWLDGSLPGDYGFDPLGLGKDPA 92

Query: 252 ALKWYREAEIIHGRWAMAAVVGIFVGQAWSGVPWFEAGAQPGAVAPFSFXXXXXXXXXXM 431
            LKWYREAE+IHGRWAMAAV+GIFVGQAWSG+PWFEAGA PGA+APFSF          M
Sbjct: 93  FLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLM 152

Query: 432 GWVESKRWVDFFDTGSQSIEWATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGK 611
           GWVESKRWVDFF+  SQS+EWATPWS+T+ENFAN TG QGYPGGKFFDPL+LAG L++G 
Sbjct: 153 GWVESKRWVDFFNPESQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLSLAGTLQDGV 212

Query: 612 YTPDYSKLERLQLAEIKHARLAMVAMLIFY 701
           Y PD  KLERL++AEIKHARLAM+AMLIFY
Sbjct: 213 YIPDTEKLERLKVAEIKHARLAMLAMLIFY 242


>tr|Q9XF90|Q9XF90_ARATH Lhcb6 protein OS=Arabidopsis thaliana
           GN=Lhcb6 PE=2 SV=1
          Length = 258

 Score =  329 bits (843), Expect = 1e-88
 Identities = 152/209 (72%), Positives = 175/209 (83%)
 Frame = +3

Query: 75  GSRLVCMATKKVSSRPSSGKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAA 254
           G++ V   T  V++  +  KKSW+P V+GGGN +DPEWLDGSLPGD+GFDPLGLGKDPA 
Sbjct: 35  GAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAF 94

Query: 255 LKWYREAEIIHGRWAMAAVVGIFVGQAWSGVPWFEAGAQPGAVAPFSFXXXXXXXXXXMG 434
           LKWYREAE+IHGRWAMAAV+GIFVGQAWSGV WFEAGAQP A+APFSF          MG
Sbjct: 95  LKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMG 154

Query: 435 WVESKRWVDFFDTGSQSIEWATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKY 614
           WVESKRWVDFF+  SQS+EWATPWS+T+ENFAN TG QGYPGG+FFDPL LAG+ ++G Y
Sbjct: 155 WVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVY 214

Query: 615 TPDYSKLERLQLAEIKHARLAMVAMLIFY 701
            PD+ KLERL+LAEIKH+RLAMVAMLIFY
Sbjct: 215 EPDFEKLERLKLAEIKHSRLAMVAMLIFY 243


>tr|Q9LMQ2|Q9LMQ2_ARATH F7H2.16 protein (Chlorophyll A-B binding
           protein) (Lhcb6 protein) (Putative chlorophyll binding
           protein) OS=Arabidopsis thaliana GN=At1g15820/F7H2.16
           PE=2 SV=1
          Length = 258

 Score =  329 bits (843), Expect = 1e-88
 Identities = 152/209 (72%), Positives = 175/209 (83%)
 Frame = +3

Query: 75  GSRLVCMATKKVSSRPSSGKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAA 254
           G++ V   T  V++  +  KKSW+P V+GGGN +DPEWLDGSLPGD+GFDPLGLGKDPA 
Sbjct: 35  GAQRVGRKTLIVAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAF 94

Query: 255 LKWYREAEIIHGRWAMAAVVGIFVGQAWSGVPWFEAGAQPGAVAPFSFXXXXXXXXXXMG 434
           LKWYREAE+IHGRWAMAAV+GIFVGQAWSGV WFEAGAQP A+APFSF          MG
Sbjct: 95  LKWYREAELIHGRWAMAAVLGIFVGQAWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMG 154

Query: 435 WVESKRWVDFFDTGSQSIEWATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKY 614
           WVESKRWVDFF+  SQS+EWATPWS+T+ENFAN TG QGYPGG+FFDPL LAG+ ++G Y
Sbjct: 155 WVESKRWVDFFNPDSQSVEWATPWSKTAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVY 214

Query: 615 TPDYSKLERLQLAEIKHARLAMVAMLIFY 701
            PD+ KLERL+LAEIKH+RLAMVAMLIFY
Sbjct: 215 EPDFEKLERLKLAEIKHSRLAMVAMLIFY 243


>tr|Q6DV17|Q6DV17_BRARP Lhcb6 protein (Fragment) OS=Brassica rapa
           subsp. pekinensis PE=2 SV=1
          Length = 254

 Score =  327 bits (837), Expect = 6e-88
 Identities = 149/198 (75%), Positives = 169/198 (85%)
 Frame = +3

Query: 108 VSSRPSSGKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAALKWYREAEIIH 287
           V++  +  KKSW+P V+GGGN +DPEWLDGSLPGD+GFDPLGLGKDPA LKWYREAE+IH
Sbjct: 42  VAAAAAQPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIH 101

Query: 288 GRWAMAAVVGIFVGQAWSGVPWFEAGAQPGAVAPFSFXXXXXXXXXXMGWVESKRWVDFF 467
           GRWAMAAV+GIFVGQAWSGVPWFEAGA P A+APFSF          MGWVESKRWVDFF
Sbjct: 102 GRWAMAAVLGIFVGQAWSGVPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFF 161

Query: 468 DTGSQSIEWATPWSRTSENFANATGLQGYPGGKFFDPLALAGELKNGKYTPDYSKLERLQ 647
           +  SQS+EWATPWSRT+ENFAN TG QGYPGG+FFDPL LAG+ ++G Y PD  KLERL+
Sbjct: 162 NPDSQSVEWATPWSRTAENFANYTGDQGYPGGRFFDPLGLAGKTRDGVYEPDREKLERLK 221

Query: 648 LAEIKHARLAMVAMLIFY 701
           LAEIKH+RLAM+AMLIFY
Sbjct: 222 LAEIKHSRLAMLAMLIFY 239