DK948176
Clone id TST38A01NGRL0002_J24
Library
Length 660
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_J24. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
TGCGGCCTCACTCAATTTTAACACTAATTTAGTGTGTAAGTCTATAATAACAAAGTATTA
ATGTAGGAATATAAACTTAATTAAACATCGGAGTCAAATTTTGTACAATCTTTGAAAGAA
GAGAAGAAAAAAAACTTTTCTTTCACAACAAAGTTGTGAAAAGATGTCGGACCCCCCTCT
TGCTTATCTATTTACGGATGCAACGTAAAAGTGGTAATAAAAAGTAGATTTTTGAGAATA
TCTTCCCAAATAGGGATTTTTGCTGGAAATCAATGTTTCCCATCCCAACCGGATTTGAGT
TGTCTAAGCCACTTCTCCTTTTTCCAAATCAAATTGAATTGAATAGCAATAATTATTGCT
AAATATTTTACCTGAGATACGGGTAGACTTTGGGAGTGGTTGAATAGCTACCTTGTCACA
TGGAGTTGATATCATACTTTTTTTTTTCTTTCTCTGTTCCCCTTCTTCACTCAGTAAGGA
TAGAGAAATAAAGGATAAATAAATAGATTTGATTGATTACCAGCCTCGCTTCAGTTTGTA
GGAACTTACATTCAGCGATCGTCGCTAAATACGTACTATCTGATGCTGATTTTGACAAAT
AGTTTCACATCACTTGATTGAAACGAGAGCTATTTATATATACCATACCATTTCAAAAAC
■■Homology search results ■■ -
sp_hit_id P59594
Definition sp|P59594|SPIKE_CVHSA Spike glycoprotein OS=Human SARS coronavirus
Align length 61
Score (bit) 30.8
E-value 6.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK948176|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_J24, 5'
(660 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P59594|SPIKE_CVHSA Spike glycoprotein OS=Human SARS coronavir... 31 6.6

>sp|P59594|SPIKE_CVHSA Spike glycoprotein OS=Human SARS coronavirus
GN=S PE=1 SV=1
Length = 1255

Score = 30.8 bits (68), Expect = 6.6
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Frame = +3

Query: 192 LRMQRKSGNKK*IFENIFPNRD---FCWKSMFPI------PTGFELSKPLLLFPNQIELN 344
L + KSGN K + E +F N+D + +K PI P+GF KP+ P I +
Sbjct: 170 LDVSEKSGNFKHLREFVFKNKDGFLYVYKGYQPIDVVRDLPSGFNTLKPIFKLPLGINIT 229

Query: 345 S 347
+
Sbjct: 230 N 230


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK948176|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_J24, 5'
(660 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******