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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948187
Clone id TST38A01NGRL0002_K11
Library
Length 694
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_K11. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGACCATGTCTGCGTCTCTGGCCGTGAGCGCGCCGAGCTGCCCACCCGCAGAGCAGAGCC
TCTCACAGAAGAGCTTCTCGGGCCTCAAGGCGACCACTCTATTCGCCCTCAAGTGCGGCA
ATCCCCTCGCCCTCTCCAATGGCAGCCGCATCAGCGCCATGCTGGTGTGGAAGCCGTACG
ACAACAAGAAGTTTGAGACTCTGTCATATCTGCCGCAGCTGAGTAGCGAGCAGATAGCAA
AGCAGGTGGACTACATGGTGCGACAGAACTTTACCCCCTGCATCGAGTTCGACAACATTG
GGAGCGTGTACCGGGAGCACTTCCACGGGAGCGGGTACTACGATGGGAGGTACTGGGTGA
TGTGGAAGCTGCCCATGTTTGGCTGCACCGACTCTGCCGCCGTTCTGCGAGAGATTACTG
AGTGCGCCAAGGAGTATCCCAAGGCCTTCATCCGGGTGCTTGGCTTCGATGCCAAGCGCC
AGGTCCAGGTTGCTGGCTTCCTCGTCCAGAAGCCTGGCCAGTAACCTCATCTGAGTTACT
CCTTGGGAGACATTGATCACAATAATTTGGGAGGCAAATCGCCCTTTCAAAGCTTGATAC
GCTGTCGTTGTGGCTGCTGTTGGCTTCATGTTTTGTCCATAAGGCATTTAGAGTATATGG
ACACACTTTTTGAAGAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q96542
Definition sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa
Align length 176
Score (bit) 190.0
E-value 5.0e-48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948187|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_K11, 5'
         (672 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   190   5e-48
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   186   7e-47
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   185   2e-46
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   184   3e-46
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   184   5e-46
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   183   6e-46
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   183   8e-46
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   182   1e-45
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   181   2e-45
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha...   181   2e-45
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   181   4e-45
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   180   5e-45
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   179   9e-45
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   179   2e-44
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   178   3e-44
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   177   3e-44
sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha...   177   3e-44
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha...   177   6e-44
sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai...   176   8e-44
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   176   1e-43
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   176   1e-43
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...   175   2e-43
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   175   2e-43
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai...   174   3e-43
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   174   3e-43
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   174   3e-43
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   174   4e-43
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...   174   4e-43
sp|P31333|RBS_GOSHI Ribulose bisphosphate carboxylase small chai...   174   5e-43
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   174   5e-43

>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  190 bits (483), Expect = 5e-48
 Identities = 96/176 (54%), Positives = 119/176 (67%), Gaps = 5/176 (2%)
 Frame = +3

Query: 3   TMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVW 170
           +M +S  V+A S     QS     F+ LK+T+ F +  K  N +    SNG R+  M VW
Sbjct: 4   SMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVW 63

Query: 171 KPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDG 347
            P   KKFETLSYLP LSSEQ+AK+VDY++R+N  PC+EF+   G VYREH    GYYDG
Sbjct: 64  PPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDG 123

Query: 348 RYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
           RYW MWKLPMFGC DS+ VL+E+ EC K YP AFIR++GFD KRQVQ+  F+  KP
Sbjct: 124 RYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  186 bits (473), Expect = 7e-47
 Identities = 90/175 (51%), Positives = 116/175 (66%), Gaps = 5/175 (2%)
 Frame = +3

Query: 6   MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVWK 173
           M++S+  SA       Q+     F+GLK++  F    K  N +    SNG R++ M VW 
Sbjct: 1   MASSMLSSATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWP 60

Query: 174 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 350
           P   KKFETLSYLP L+  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGR 120

Query: 351 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
           YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  185 bits (469), Expect = 2e-46
 Identities = 90/173 (52%), Positives = 116/173 (67%), Gaps = 5/173 (2%)
 Frame = +3

Query: 12  ASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLAL--SNGSRISAMLVWKPY 179
           +S A++  +   + Q+     F+GLK+   F +  K  N  +   SNG R+  M VW P 
Sbjct: 5   SSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPI 64

Query: 180 DNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRYW 356
             KK+ETLSYLP LS E ++K++DY++R  + PC+EF+   G VYREH H  GYYDGRYW
Sbjct: 65  GLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYW 124

Query: 357 VMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
            MWKLPMFGCTDSA V++E+ EC KEYP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 125 TMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small chain
           1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B
           PE=1 SV=1
          Length = 181

 Score =  184 bits (468), Expect = 3e-46
 Identities = 91/175 (52%), Positives = 117/175 (66%), Gaps = 5/175 (2%)
 Frame = +3

Query: 6   MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVWK 173
           M++S+  SA       Q+     F+GLK++  F +  K  N +    SNG R+S M VW 
Sbjct: 1   MASSMLSSAAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60

Query: 174 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 350
           P   KKFETLSYLP L+  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120

Query: 351 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
           YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain
           2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B
           PE=2 SV=2
          Length = 181

 Score =  184 bits (466), Expect = 5e-46
 Identities = 91/175 (52%), Positives = 116/175 (66%), Gaps = 5/175 (2%)
 Frame = +3

Query: 6   MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVWK 173
           M++S+  S        Q+     F+GLK++  F +  K  N +    SNG R+S M VW 
Sbjct: 1   MASSMFSSTAVVTSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWP 60

Query: 174 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 350
           P   KKFETLSYLP LS  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120

Query: 351 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
           YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small chain
           3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B
           PE=1 SV=2
          Length = 181

 Score =  183 bits (465), Expect = 6e-46
 Identities = 91/175 (52%), Positives = 116/175 (66%), Gaps = 5/175 (2%)
 Frame = +3

Query: 6   MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVWK 173
           M++S+  SA       Q+     F+GLK++  F +  K    +    SNG R+S M VW 
Sbjct: 1   MASSMLSSAAVVTSPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWP 60

Query: 174 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 350
           P   KKFETLSYLP LS  ++AK+VDY++R  + PC+EF+   G VYREH +  GYYDGR
Sbjct: 61  PIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGR 120

Query: 351 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
           YW MWKLP+FGCTDSA VL+E+ EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  183 bits (464), Expect = 8e-46
 Identities = 86/156 (55%), Positives = 110/156 (70%), Gaps = 8/156 (5%)
 Frame = +3

Query: 72  SFSGLKATTLF--ALKCGNPLA------LSNGSRISAMLVWKPYDNKKFETLSYLPQLSS 227
           +F+GLK+T  F  + K  N  A       SNG R+  M VW P+ N KFETLSYLP L+ 
Sbjct: 15  AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 228 EQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYWVMWKLPMFGCTDSAAVL 407
           EQ+ K+V+Y++R  + PC+EFD  GS+ R++    GYYDGRYWVMWKLPMFGCT+++ V+
Sbjct: 75  EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVI 134

Query: 408 REITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
            E+ ECAK YPKAFIRV+GFD  RQVQ   F+V KP
Sbjct: 135 NEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2
          Length = 181

 Score =  182 bits (463), Expect = 1e-45
 Identities = 89/175 (50%), Positives = 116/175 (66%), Gaps = 5/175 (2%)
 Frame = +3

Query: 6   MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVWK 173
           M++S+  SA       Q+     F+GLK+++ F +  K  N +   +SNG R+S M VW 
Sbjct: 1   MASSMLSSAAVVTSPAQATMVAPFTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWP 60

Query: 174 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 350
           P   KKFETLSYLP L+  ++ K+VDY++R  + PC+EF+   G VYREH    GYYDGR
Sbjct: 61  PVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGR 120

Query: 351 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
           YW MWKLP+FGCTDSA VL+E+ EC  EYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175


>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain
           2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1
          Length = 180

 Score =  181 bits (460), Expect = 2e-45
 Identities = 90/172 (52%), Positives = 119/172 (69%), Gaps = 4/172 (2%)
 Frame = +3

Query: 12  ASLAVSAPSCPPAEQSLSQKSFSGLKATTLF-ALKCGNPLA--LSNGSRISAMLVWKPYD 182
           +S AV+  S  PA+ S+    F+GLK+T  F A K  + +    SNG R+  M VW   +
Sbjct: 7   SSAAVATVSRTPAQASMVAP-FTGLKSTVGFPATKKNDDITSLASNGGRVQCMKVWPTQN 65

Query: 183 NKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGRYWV 359
            K++ETLSYLP L+++Q+A+QVDY++   + PC+EF+ + G VYREH +  GYYDGRYW 
Sbjct: 66  MKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWT 125

Query: 360 MWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
           MWKLPMFGCTD A VL E+ EC KEYP AFIR++GFD+ RQVQ   F+  KP
Sbjct: 126 MWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSFIAYKP 177


>sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small chain
           F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1
          Length = 181

 Score =  181 bits (460), Expect = 2e-45
 Identities = 89/175 (50%), Positives = 114/175 (65%), Gaps = 5/175 (2%)
 Frame = +3

Query: 6   MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFAL--KCGNPLA--LSNGSRISAMLVWK 173
           M++S+  SA       Q+     F+GLK++  F +  K  N +    SNG R+S M VW 
Sbjct: 1   MASSMLSSAAVVTSPAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRVSCMKVWP 60

Query: 174 PYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFD-NIGSVYREHFHGSGYYDGR 350
           P   KKFETLSYLP L+  ++ K+VDY++R  + PC+EF+   G VYREH    GYYDGR
Sbjct: 61  PVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGR 120

Query: 351 YWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
           YW MWKLP+FGCTDSA VL+E+ EC  EYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 121 YWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 173
Score (bit) 301.0
E-value 2.0e-80
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948187|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_K11, 5'
         (672 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   301   2e-80
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   213   1e-53
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   211   3e-53
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   210   7e-53
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   209   1e-52
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   209   1e-52
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   207   5e-52
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   194   4e-48
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   193   7e-48
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   193   9e-48
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   192   1e-47
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   191   3e-47
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   191   4e-47
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   191   5e-47
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   191   5e-47
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   190   6e-47
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   190   8e-47
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...   190   8e-47
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   189   2e-46
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...   189   2e-46
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c...   189   2e-46
tr|A9NL36|A9NL36_PICSI Ribulose bisphosphate carboxylase small c...   189   2e-46
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   188   3e-46
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   186   9e-46
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   186   1e-45
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   185   3e-45
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   185   3e-45
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   185   3e-45
tr|A9NM29|A9NM29_PICSI Ribulose bisphosphate carboxylase small c...   183   7e-45
tr|A9NLD6|A9NLD6_PICSI Ribulose bisphosphate carboxylase small c...   183   7e-45

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  301 bits (771), Expect = 2e-80
 Identities = 145/173 (83%), Positives = 158/173 (91%)
 Frame = +3

Query: 3   TMSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKPYD 182
           TM A++AVSAPSC  A +SLS KSFSGLKA TLFA KC NPLA+SNGSRISAMLVWKPYD
Sbjct: 3   TMLAAMAVSAPSCAAAAESLS-KSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYD 61

Query: 183 NKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYWVM 362
           NKKFETLSYLP L+++QIAKQV+YMVR+ +TPCIEFD IGSVYREHFHGSGYYDGRYW+M
Sbjct: 62  NKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIM 121

Query: 363 WKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKPGQ 521
           WKLPMFGCTDS +VLREI ECAKEYP AFIRVLGFDAKRQVQVAGFLV+KP Q
Sbjct: 122 WKLPMFGCTDSGSVLREIAECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPSQ 174


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  213 bits (541), Expect = 1e-53
 Identities = 101/173 (58%), Positives = 124/173 (71%), Gaps = 3/173 (1%)
 Frame = +3

Query: 6   MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKPYDN 185
           +S S+  +A       +S S K FSGLK+TTLFA K     ++ NGSR+  M VW P   
Sbjct: 6   VSVSIVAAASPAAVCRESSSVKQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQ 65

Query: 186 KKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYW 356
            KFET SYLP L+ +QIAKQVD+M++QN  PCIEFD +GSV R +F G   SGYYDGRYW
Sbjct: 66  PKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYW 125

Query: 357 VMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
            MWKLPMFGCTDSA VLREI EC + +P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 126 TMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARP 178


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  211 bits (537), Expect = 3e-53
 Identities = 100/170 (58%), Positives = 123/170 (72%), Gaps = 3/170 (1%)
 Frame = +3

Query: 15  SLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKPYDNKKF 194
           SL  +A S   + +S + K+FSGLK  TLF+ K     A+ NGSR+  M VW P    KF
Sbjct: 14  SLGAAASSVAASNESATVKAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKF 73

Query: 195 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 365
           ET SYLP L+ +QIAKQVDYM++QN  PCIEFD +GSV R +F G   SGYYDGRYW MW
Sbjct: 74  ETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 133

Query: 366 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
           KLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 134 KLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRP 183


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  210 bits (534), Expect = 7e-53
 Identities = 99/170 (58%), Positives = 123/170 (72%), Gaps = 3/170 (1%)
 Frame = +3

Query: 15  SLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKPYDNKKF 194
           S+ V++ S   + +S S K+FSGLK+ TLF  K     ++ NGSR+  M VW P    KF
Sbjct: 14  SVTVASSSVAASRESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKF 73

Query: 195 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 365
           ET SYLP LS +QIA+QVDYM++QN  PCIEFD +G+V R +F G   SGYYDGRYW MW
Sbjct: 74  ETFSYLPPLSDDQIARQVDYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMW 133

Query: 366 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
           KLPMFGCTDS+ VLREI EC   YP  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 134 KLPMFGCTDSSQVLREIQECKTSYPSCWVRVLGFDSKKQVQICGFLVARP 183


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  209 bits (533), Expect = 1e-52
 Identities = 102/171 (59%), Positives = 124/171 (72%), Gaps = 3/171 (1%)
 Frame = +3

Query: 12  ASLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKPYDNKK 191
           AS  V APS     +S S K+FSGLK+ TLF+ K     ++ NGSR+  M VW P    K
Sbjct: 48  ASSCVGAPS-----ESSSVKAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPK 102

Query: 192 FETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVM 362
           FET SYLP L+ +QIAKQVDYM++QN  PCIEFD +GSV R +F G   SGYYDGRYW M
Sbjct: 103 FETFSYLPPLTDDQIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTM 162

Query: 363 WKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
           WKLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 163 WKLPMFGCTDSSQVLREIQECKSQFPSCWVRVLGFDSKKQVQICGFLVSRP 213


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  209 bits (533), Expect = 1e-52
 Identities = 100/173 (57%), Positives = 123/173 (71%), Gaps = 3/173 (1%)
 Frame = +3

Query: 6   MSASLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKPYDN 185
           +S S+  +A       +S S K FSGLK+TTL A K     ++ NGSR+  M VW P   
Sbjct: 6   VSVSIVAAASPASVCRESSSVKQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQ 65

Query: 186 KKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYW 356
            KFET SYLP L+ +QIAKQVD+M++QN  PCIEFD +GSV R +F G   SGYYDGRYW
Sbjct: 66  PKFETFSYLPPLTDDQIAKQVDFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYW 125

Query: 357 VMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
            MWKLPMFGCTDSA VLREI EC + +P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 126 TMWKLPMFGCTDSAQVLREIQECKQSFPSCWVRVLGFDSKKQVQICGFLVARP 178


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  207 bits (527), Expect = 5e-52
 Identities = 98/170 (57%), Positives = 125/170 (73%), Gaps = 3/170 (1%)
 Frame = +3

Query: 15  SLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKPYDNKKF 194
           SLA ++P+   +  S S K+FSGLK+ TLF+ +     ++ NGSR+  M VW P    KF
Sbjct: 14  SLAAASPAAV-SRDSTSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKF 72

Query: 195 ETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHG---SGYYDGRYWVMW 365
           ET SYLP L+ ++IAKQVDYM++QN  PCIEFD +GSV R +F G   SGYYDGRYW MW
Sbjct: 73  ETFSYLPPLTDDEIAKQVDYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMW 132

Query: 366 KLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
           KLPMFGCTDS+ VLREI EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P
Sbjct: 133 KLPMFGCTDSSQVLREIQECKTQFPSCWVRVLGFDSKKQVQICGFLVSRP 182


>tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_152025 PE=3 SV=1
          Length = 183

 Score =  194 bits (493), Expect = 4e-48
 Identities = 92/163 (56%), Positives = 111/163 (68%)
 Frame = +3

Query: 27  SAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKPYDNKKFETLS 206
           +A S     +S S K+FSGLK+ TLF+ K     ++ NGSR+  M VW P    KFET S
Sbjct: 20  AASSAVSTSESSSVKAFSGLKSNTLFSSKAQTLSSVQNGSRVQCMQVWNPIGMTKFETFS 79

Query: 207 YLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYWVMWKLPMFGC 386
           YLP LS + IAKQV+YM++Q   PC+EFDN   V R +    GYYDGRYW MWKLPMFGC
Sbjct: 80  YLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGC 139

Query: 387 TDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
            DSA VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +P
Sbjct: 140 NDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARP 182


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  193 bits (491), Expect = 7e-48
 Identities = 94/168 (55%), Positives = 116/168 (69%)
 Frame = +3

Query: 12  ASLAVSAPSCPPAEQSLSQKSFSGLKATTLFALKCGNPLALSNGSRISAMLVWKPYDNKK 191
           A+ A S+ +   +E S S K+FSGLK++TLF+ K  +  ++ NGSR+  M VW P    K
Sbjct: 14  AAFAASSSAVSTSE-STSVKAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTK 72

Query: 192 FETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSGYYDGRYWVMWKL 371
           FET SYLP LS + IAKQVDYM++Q   PC+EFDN   V R +    GYYDGRYW MWKL
Sbjct: 73  FETFSYLPPLSDDAIAKQVDYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKL 132

Query: 372 PMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
           PMFGC D A VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +P
Sbjct: 133 PMFGCQDPAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARP 180


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  193 bits (490), Expect = 9e-48
 Identities = 95/180 (52%), Positives = 118/180 (65%), Gaps = 10/180 (5%)
 Frame = +3

Query: 6   MSASLAVSAPSCPPA----------EQSLSQKSFSGLKATTLFALKCGNPLALSNGSRIS 155
           M++++A SA   P A            S + K+FSGLK+ T+F+ K  N  ++ NGSR+ 
Sbjct: 1   MASTVAASAVVAPTAFAAASPAASTSGSTTVKAFSGLKSATVFSGKAQNSSSVQNGSRVQ 60

Query: 156 AMLVWKPYDNKKFETLSYLPQLSSEQIAKQVDYMVRQNFTPCIEFDNIGSVYREHFHGSG 335
            M VW P    KFET SYLP LS + IAKQV+YM++Q   PC+EFDN   V R +    G
Sbjct: 61  CMQVWNPIGMTKFETFSYLPPLSDDAIAKQVEYMIQQKLIPCLEFDNANGVSRTNNSSPG 120

Query: 336 YYDGRYWVMWKLPMFGCTDSAAVLREITECAKEYPKAFIRVLGFDAKRQVQVAGFLVQKP 515
           YYDGRYW MWKLPMFGC DSA VLREI EC K +P  F+RVLGFD  +QVQ+ GFLV +P
Sbjct: 121 YYDGRYWTMWKLPMFGCQDSAQVLREIEECKKTFPGCFVRVLGFDNVKQVQICGFLVARP 180