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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948208
Clone id TST38A01NGRL0002_L09
Library
Length 670
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_L09. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GAGAATAAACCCTGGAAAATAGAGGCAGGTACACGCAAACTGGAAGTAGAACTGACTACA
ATCTCAAGCAACTATCATGTGGAGTTAAATCCGAGTGACGCTGGTTTTCAAGATAGATAT
GTTGTGCAAGAGATTATCAAGGAGATGGCCAAGAGCAGGCCACTTGATGTTGCTGGCAAC
AAGAGCTTCAAAGTACTCGTTTTGAATGAAGTTGATAGACTCTCGAAAGAGGCGCAACAT
TCTCTTCGCCGTACTATGGAAAAGTACAGTTCAGCTTGTAGGCTAATTTTGTGCTGCAAC
AGTGCCTCGAAGGTCATTGAAGCAGTTCGTTCGCGTTGCTTGAACATTCGAATAAGTGCA
CCATCTAAAGAGGAGATTGTGAAAGTGCTTCAACATGTTGCCAAGAAAGAAGGCTTGCAG
CTCCCTTTAGGGTTTGCTGCTCGAATAGCACTCAGTTCCAATAGAAATCTACGGCGTGCA
ATTCTTTCTTTGGAGGCATGCAAAGTTCATCAATATCCCTTTACTGAAGATCAATCTGTT
CAATCAGCTGATTGGGAACAGTACATTGTAGAAATTGCATCTGATATTGTAAACGAGCAG
AGTCCAAAGAGATTGTTCTTGGTACGTGGAAAACTTTACGAGCTACTTGTCAATTGCATT
CCACCTGAAA
■■Homology search results ■■ -
sp_hit_id Q8R323
Definition sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus musculus
Align length 211
Score (bit) 263.0
E-value 8.0e-70
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948208|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_L09, 5'
         (670 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus muscu...   263   8e-70
sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos tauru...   262   1e-69
sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapi...   260   5e-69
sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3 OS=...   238   2e-62
sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospor...   192   1e-48
sp|O94697|RFC5_SCHPO Replication factor C subunit 5 OS=Schizosac...   178   2e-44
sp|P38251|RFC5_YEAST Replication factor C subunit 5 OS=Saccharom...   154   4e-37
sp|Q5UQE8|RFCS2_MIMIV Putative replication factor C small subuni...   109   1e-23
sp|O57852|RFCS_PYRHO Replication factor C small subunit OS=Pyroc...   103   1e-21
sp|Q8U4J3|RFCS_PYRFU Replication factor C small subunit OS=Pyroc...   102   1e-21
sp|Q5JHP2|RFCS_PYRKO Replication factor C small subunit OS=Pyroc...   101   3e-21
sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Metha...   101   4e-21
sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Metha...   100   7e-21
sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Metha...   100   1e-20
sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Metha...   100   1e-20
sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncul...    97   8e-20
sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Metha...    97   8e-20
sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Metha...    97   8e-20
sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Metha...    97   8e-20
sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Metha...    95   3e-19
sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archa...    94   5e-19
sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Metha...    94   7e-19
sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Metha...    90   9e-18
sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staph...    89   2e-17
sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aerop...    88   5e-17
sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Therm...    87   6e-17
sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfo...    87   6e-17
sp|O26343|RFCS_METTH Replication factor C small subunit OS=Metha...    87   8e-17
sp|Q8TZC4|RFCS_METKA Replication factor C small subunit OS=Metha...    87   1e-16
sp|Q9HI47|RFCS_THEAC Replication factor C small subunit OS=Therm...    86   2e-16

>sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus musculus
           GN=Rfc3 PE=2 SV=1
          Length = 356

 Score =  263 bits (671), Expect = 8e-70
 Identities = 125/211 (59%), Positives = 165/211 (78%)
 Frame = +1

Query: 37  KLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGNKSFKVLVLNEVD 216
           K ++E++TI+SNYH+E+NPSDAG  DR V+QE++K +A+S+ L+ +  + FKV++L EVD
Sbjct: 79  KKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQRDFKVVLLTEVD 138

Query: 217 RLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISAPSKEEIVKVLQH 396
           +L+K+AQH+LRRTMEKY S CRLILCCNS SKVI  +RSRCL +R+ APS E+I  VL  
Sbjct: 139 KLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICSVLST 198

Query: 397 VAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSVQSADWEQYIVEI 576
           V +KEGL LP   A R+A  S RNLR+A+L  EAC+V QYPFTEDQ +   DWE Y+ E 
Sbjct: 199 VCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETDWEVYLRET 258

Query: 577 ASDIVNEQSPKRLFLVRGKLYELLVNCIPPE 669
           A+ IV++Q+P+RL  VRG+LYELL +CIPPE
Sbjct: 259 ANAIVSQQTPQRLLEVRGRLYELLTHCIPPE 289


>sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus
           GN=RFC3 PE=2 SV=1
          Length = 356

 Score =  262 bits (669), Expect = 1e-69
 Identities = 126/211 (59%), Positives = 164/211 (77%)
 Frame = +1

Query: 37  KLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGNKSFKVLVLNEVD 216
           K ++E++TI+SNYH+E+NPSDAG  DR V+QE++K +A+S+ L+ +  K FKV++L EVD
Sbjct: 79  KKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETSSQKDFKVVLLTEVD 138

Query: 217 RLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISAPSKEEIVKVLQH 396
           +L+K+AQH+LRRTMEKY S CRLILCCNS SKVI  +RSRCL +R+ APS E+I  VL  
Sbjct: 139 KLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLST 198

Query: 397 VAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSVQSADWEQYIVEI 576
           V KKEGL LP   A R+A  S RNLR+A+L  EAC+V QYPFT DQ +   DWE Y+ E 
Sbjct: 199 VCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRET 258

Query: 577 ASDIVNEQSPKRLFLVRGKLYELLVNCIPPE 669
           A+ IV++Q+P+RL  VRG+LYELL +CIPPE
Sbjct: 259 ANAIVSQQTPQRLLEVRGRLYELLTHCIPPE 289


>sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapiens
           GN=RFC3 PE=1 SV=2
          Length = 356

 Score =  260 bits (664), Expect = 5e-69
 Identities = 125/211 (59%), Positives = 163/211 (77%)
 Frame = +1

Query: 37  KLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGNKSFKVLVLNEVD 216
           K ++E++TI+SNYH+E+NPSDAG  DR V+QE++K +A+S+ L+    + FKV++L EVD
Sbjct: 79  KKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVD 138

Query: 217 RLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISAPSKEEIVKVLQH 396
           +L+K+AQH+LRRTMEKY S CRLILCCNS SKVI  +RSRCL +R+ APS E+I  VL  
Sbjct: 139 KLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLST 198

Query: 397 VAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSVQSADWEQYIVEI 576
           V KKEGL LP   A R+A  S RNLR+A+L  EAC+V QYPFT DQ +   DWE Y+ E 
Sbjct: 199 VCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRET 258

Query: 577 ASDIVNEQSPKRLFLVRGKLYELLVNCIPPE 669
           A+ IV++Q+P+RL  VRG+LYELL +CIPPE
Sbjct: 259 ANAIVSQQTPQRLLEVRGRLYELLTHCIPPE 289


>sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3
           OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1
          Length = 347

 Score =  238 bits (607), Expect = 2e-62
 Identities = 118/213 (55%), Positives = 154/213 (72%)
 Frame = +1

Query: 31  TRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGNKSFKVLVLNE 210
           T    +++TTISS+YH+E+NP +AG  DR V+Q IIKE+A+S P+D     +FK+++LNE
Sbjct: 77  TSSKNIQITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQSPPIDSGSLGAFKIVILNE 136

Query: 211 VDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISAPSKEEIVKVL 390
           VD+LSK+AQH+LRRTMEKY++ CRLILCC+S +KVI+ ++SRCL IR+ APS+EEI KVL
Sbjct: 137 VDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLGIRVPAPSQEEIEKVL 196

Query: 391 QHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSVQSADWEQYIV 570
             VA  E   LP   A  +A  S  NLR A++ LE+ K  QYPF +   +   DWE YI 
Sbjct: 197 AKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPF-QSTELPLLDWENYIS 255

Query: 571 EIASDIVNEQSPKRLFLVRGKLYELLVNCIPPE 669
           +I  D   EQSP RL +VRGKLYELL +CIPPE
Sbjct: 256 QIVKDCFEEQSPARLSIVRGKLYELLGHCIPPE 288


>sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospora
           crassa GN=B14D6.460 PE=3 SV=1
          Length = 352

 Score =  192 bits (489), Expect = 1e-48
 Identities = 99/213 (46%), Positives = 141/213 (66%)
 Frame = +1

Query: 25  AGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGNKSFKVLVL 204
           +  RKLE  +  ++S YH+E+ PSD G  DR VVQ+++KE+A+++ +D++  + FKV+V+
Sbjct: 77  SSNRKLEFNI--VASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQVDLSAKQRFKVVVI 134

Query: 205 NEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISAPSKEEIVK 384
           NE D L+++AQ +LRRTMEKYS   RLIL  NS + +I  +RSRCL +R++AP+ +EI  
Sbjct: 135 NEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCLLVRVAAPTHKEICD 194

Query: 385 VLQHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSVQSADWEQY 564
           VL   AKKEG  +  G   RIA  S RNLRRA+L  EA        T+   +   DWE  
Sbjct: 195 VLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKVTDSTPIPPPDWEAL 254

Query: 565 IVEIASDIVNEQSPKRLFLVRGKLYELLVNCIP 663
           I +IA +I+ E +P R+  VR KLY+LL +CIP
Sbjct: 255 IGQIAKEIMEEHTPARILQVRAKLYDLLTHCIP 287


>sp|O94697|RFC5_SCHPO Replication factor C subunit 5
           OS=Schizosaccharomyces pombe GN=rfc5 PE=1 SV=1
          Length = 358

 Score =  178 bits (452), Expect = 2e-44
 Identities = 93/218 (42%), Positives = 143/218 (65%), Gaps = 6/218 (2%)
 Frame = +1

Query: 31  TRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGNKSFKVLVLNE 210
           ++KL++ +  +SS +H+E+ PSD G  DR ++QE++K++A+S  +D+   K FKV+V+N 
Sbjct: 78  SKKLQINI--VSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVDLQAKKIFKVVVINV 135

Query: 211 VDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISAPSKEEIVKVL 390
            D L+++AQ +LRRTMEKYS+  RLIL  NS SK+IE +RSR L +R++AP+ EEI+ V+
Sbjct: 136 ADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMVRVAAPTPEEIILVM 195

Query: 391 QHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSVQSA------D 552
             +   +GL+ P      IA + +RNLR+AIL LE   VH       Q + +       D
Sbjct: 196 SKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLET--VHAKSPGNKQLIDTGAQLPLPD 253

Query: 553 WEQYIVEIASDIVNEQSPKRLFLVRGKLYELLVNCIPP 666
           W+ +I ++   ++ EQSP R+  VR  LY+LL +CIPP
Sbjct: 254 WQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPP 291


>sp|P38251|RFC5_YEAST Replication factor C subunit 5
           OS=Saccharomyces cerevisiae GN=RFC5 PE=1 SV=1
          Length = 354

 Score =  154 bits (389), Expect = 4e-37
 Identities = 91/222 (40%), Positives = 130/222 (58%), Gaps = 7/222 (3%)
 Frame = +1

Query: 19  IEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGNKS---- 186
           + A  RKLE  L  +SS YH+E+ PSD G  DR V+QE++KE+A+   +D   +K     
Sbjct: 76  VTASNRKLE--LNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAH 133

Query: 187 -FKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISAP 363
            +K +++NE + L+K+AQ +LRRTMEKYS   RLI+ C+S S +I  ++SRCL IR  AP
Sbjct: 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAP 193

Query: 364 SKEEIVKVLQHVAKKEGLQLPL-GFAARIALSSNRNLRRAILSLEACKV-HQYPFTEDQS 537
           S  EI  +L  V   E +QL       RIA +SN NLR ++L LE+  + ++        
Sbjct: 194 SDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSP 253

Query: 538 VQSADWEQYIVEIASDIVNEQSPKRLFLVRGKLYELLVNCIP 663
           +   DW   I ++   IV E+S   L   R  LY+LL +CIP
Sbjct: 254 IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIP 295


>sp|Q5UQE8|RFCS2_MIMIV Putative replication factor C small subunit
           L478 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L478
           PE=3 SV=1
          Length = 370

 Score =  109 bits (273), Expect = 1e-23
 Identities = 58/173 (33%), Positives = 100/173 (57%), Gaps = 1/173 (0%)
 Frame = +1

Query: 7   KPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGNK- 183
           + + I   + K E+E+  + SNYH+ + P+     D+Y++QEIIK+ A  +  D+   K 
Sbjct: 69  RKYNINGSSTKKEIEI--LQSNYHIIIEPTSTN-HDKYILQEIIKQYAMHKSFDIFKTKR 125

Query: 184 SFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISAP 363
            FK +V++ ++ L+  +Q +LRRTME+Y+  CR I+ CN+ SK+++ +RSRC    +  P
Sbjct: 126 KFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRSRCRTFCVPLP 185

Query: 364 SKEEIVKVLQHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPF 522
           + E I  V+ ++A  E ++L       I  + N NL+ AI  L    ++  PF
Sbjct: 186 TIENINTVVDYIAFMENIKLNKNDTKFILDNCNNNLKTAIWFLNCKGLNCSPF 238


>sp|O57852|RFCS_PYRHO Replication factor C small subunit OS=Pyrococcus
            horikoshii GN=rfcS PE=3 SV=1
          Length = 855

 Score =  103 bits (256), Expect = 1e-21
 Identities = 64/179 (35%), Positives = 100/179 (55%), Gaps = 3/179 (1%)
 Frame = +1

Query: 4    NKPWKIEAGTRKLEVELTTISSNYH---VELNPSDAGFQDRYVVQEIIKEMAKSRPLDVA 174
            N P  +   T  L +       N+    +ELN SD   +   V++E +KE A+++P+   
Sbjct: 579  NMPTVVHNTTAALALSRELFGENWRHNFLELNASDE--RGINVIREKVKEFARTKPI--- 633

Query: 175  GNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRI 354
            G  SFK++ L+E D L+++AQ +LRRTME +SS  R IL CN +SK+IE ++SRC   R 
Sbjct: 634  GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRF 693

Query: 355  SAPSKEEIVKVLQHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTED 531
                 E+I K L+++A+ EGL+L       I   +  ++RRAI  L+A        T++
Sbjct: 694  RPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDE 752


>sp|Q8U4J3|RFCS_PYRFU Replication factor C small subunit OS=Pyrococcus
            furiosus GN=rfcS PE=1 SV=1
          Length = 852

 Score =  102 bits (255), Expect = 1e-21
 Identities = 64/179 (35%), Positives = 100/179 (55%), Gaps = 3/179 (1%)
 Frame = +1

Query: 4    NKPWKIEAGTRKLEVELTTISSNYH---VELNPSDAGFQDRYVVQEIIKEMAKSRPLDVA 174
            N P  +   T  L +       N+    +ELN SD   +   V++E +KE A+++P+   
Sbjct: 577  NMPTVVHNTTAALALARELFGENWRHNFLELNASDE--RGINVIREKVKEFARTKPI--- 631

Query: 175  GNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRI 354
            G  SFK++ L+E D L+++AQ +LRRTME +SS  R IL CN +SK+IE ++SRC   R 
Sbjct: 632  GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRF 691

Query: 355  SAPSKEEIVKVLQHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTED 531
                 E+I K L+++A+ EGL+L       I   +  ++RRAI  L+A        T++
Sbjct: 692  RPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDE 750
tr_hit_id A9SKH1
Definition tr|A9SKH1|A9SKH1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 223
Score (bit) 362.0
E-value 9.0e-99
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948208|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_L09, 5'
         (670 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SKH1|A9SKH1_PHYPA Predicted protein OS=Physcomitrella paten...   362   9e-99
tr|A7PZY4|A7PZY4_VITVI Chromosome chr8 scaffold_41, whole genome...   352   1e-95
tr|Q8VXX4|Q8VXX4_ARATH Putative replication factor C OS=Arabidop...   345   2e-93
tr|Q84N07|Q84N07_ORYSJ Replication factor C 38 kDa subunit OS=Or...   343   7e-93
tr|Q852K3|Q852K3_ORYSJ Os03g0792600 protein OS=Oryza sativa subs...   341   2e-92
tr|A3ANI3|A3ANI3_ORYSJ Putative uncharacterized protein OS=Oryza...   341   2e-92
tr|A2XMT5|A2XMT5_ORYSI Putative uncharacterized protein OS=Oryza...   341   2e-92
tr|B6T5I0|B6T5I0_MAIZE Replication factor C subunit 5 OS=Zea may...   340   6e-92
tr|B4FER3|B4FER3_MAIZE Putative uncharacterized protein OS=Zea m...   338   2e-91
tr|A8J3U8|A8J3U8_CHLRE DNA replication factor C complex subunit ...   307   3e-82
tr|B7FHM5|B7FHM5_MEDTR Putative uncharacterized protein OS=Medic...   286   1e-75
tr|A4RWV3|A4RWV3_OSTLU Predicted protein OS=Ostreococcus lucimar...   278   2e-73
tr|Q01A06|Q01A06_OSTTA Putative replication factor (ISS) OS=Ostr...   278   2e-73
tr|B6N1Z4|B6N1Z4_BRAFL Putative uncharacterized protein OS=Branc...   268   2e-70
tr|B6KYC6|B6KYC6_BRAFL Putative uncharacterized protein OS=Branc...   266   1e-69
tr|Q5M830|Q5M830_RAT Replication factor C (Activator 1) 3 OS=Rat...   264   3e-69
tr|Q3TKD1|Q3TKD1_MOUSE Putative uncharacterized protein OS=Mus m...   263   1e-68
tr|A7S695|A7S695_NEMVE Predicted protein OS=Nematostella vectens...   263   1e-68
tr|Q4R5E8|Q4R5E8_MACFA Brain cDNA, clone: QnpA-15666, similar to...   260   6e-68
tr|Q5W0E8|Q5W0E8_HUMAN Replication factor C (Activator 1) 3, 38k...   260   6e-68
tr|B4DKE6|B4DKE6_HUMAN cDNA FLJ60629, highly similar to Replicat...   260   6e-68
tr|A8MX32|A8MX32_HUMAN Putative uncharacterized protein RFC3 OS=...   260   6e-68
tr|Q5U0C2|Q5U0C2_HUMAN Replication factor C (Activator 1) 3, 38k...   259   1e-67
tr|Q53HK8|Q53HK8_HUMAN Replication factor C 3 isoform 1 variant ...   258   2e-67
tr|Q4QQP4|Q4QQP4_XENLA MGC115007 protein OS=Xenopus laevis GN=rf...   257   5e-67
tr|A7MCR5|A7MCR5_DANRE Replication factor C (Activator 1) 3 OS=D...   254   3e-66
tr|Q5ZJP0|Q5ZJP0_CHICK Putative uncharacterized protein OS=Gallu...   254   4e-66
tr|B3RWK4|B3RWK4_TRIAD Putative uncharacterized protein OS=Trich...   253   8e-66
tr|Q8AW06|Q8AW06_DANRE Replication factor C (Activator 1) 3 OS=D...   251   3e-65
tr|Q171N9|Q171N9_AEDAE Rfc5p, putative OS=Aedes aegypti GN=AAEL0...   250   5e-65

>tr|A9SKH1|A9SKH1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_185915 PE=4 SV=1
          Length = 354

 Score =  362 bits (930), Expect = 9e-99
 Identities = 179/223 (80%), Positives = 201/223 (90%)
 Frame = +1

Query: 1   ENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGN 180
           ENKPWK+EAGTRK+EVELTT+SSN+HVELNPSDAGFQDRYVVQEIIK+MAK+RPLDVAGN
Sbjct: 69  ENKPWKVEAGTRKIEVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKDMAKNRPLDVAGN 128

Query: 181 KSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISA 360
           + FKVLVLNEVD+LSKEAQHSLRRTMEKYS+ACRL+LCCNSASKVIEAVRSRC+NIRI++
Sbjct: 129 RGFKVLVLNEVDKLSKEAQHSLRRTMEKYSAACRLLLCCNSASKVIEAVRSRCVNIRINS 188

Query: 361 PSKEEIVKVLQHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSV 540
           PS+++IV VL  VAKKE L LP   A RIA  SNRNLRR+IL LEACK  QYPFT DQ V
Sbjct: 189 PSRDDIVDVLMFVAKKENLILPPELAGRIAHHSNRNLRRSILCLEACKAKQYPFTADQEV 248

Query: 541 QSADWEQYIVEIASDIVNEQSPKRLFLVRGKLYELLVNCIPPE 669
           Q+ DWEQ+IV +A+DIV EQSPK+LF VR KLYELLVNCIPPE
Sbjct: 249 QTTDWEQFIVGLANDIVTEQSPKKLFQVREKLYELLVNCIPPE 291


>tr|A7PZY4|A7PZY4_VITVI Chromosome chr8 scaffold_41, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027060001
           PE=4 SV=1
          Length = 354

 Score =  352 bits (903), Expect = 1e-95
 Identities = 168/223 (75%), Positives = 198/223 (88%)
 Frame = +1

Query: 1   ENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGN 180
           ENK WKI+AGTR +++ELTT+SS +H+ELNP DAGFQDRY+VQEIIKEMAK+RP+D  G 
Sbjct: 69  ENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKNRPIDTKGK 128

Query: 181 KSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISA 360
           K F+VLVLNEVDRLS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSRCLNIRI+A
Sbjct: 129 KGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNIRINA 188

Query: 361 PSKEEIVKVLQHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSV 540
           P++E+I KVL+ +AKKEGLQLP GFA RIA  SNR+LRRAILS E C+V QYPFT +Q++
Sbjct: 189 PTEEQITKVLEFIAKKEGLQLPSGFATRIAEKSNRSLRRAILSFETCRVQQYPFTNNQAM 248

Query: 541 QSADWEQYIVEIASDIVNEQSPKRLFLVRGKLYELLVNCIPPE 669
              DWE+Y+ EIASDI+ EQSPKRLF VRGKLYELL+NCIPPE
Sbjct: 249 PPMDWEEYVSEIASDIMKEQSPKRLFQVRGKLYELLINCIPPE 291


>tr|Q8VXX4|Q8VXX4_ARATH Putative replication factor C OS=Arabidopsis
           thaliana GN=At5g27740 PE=2 SV=1
          Length = 354

 Score =  345 bits (884), Expect = 2e-93
 Identities = 164/223 (73%), Positives = 197/223 (88%)
 Frame = +1

Query: 1   ENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGN 180
           EN+ WK++AG+R +++ELTT+SS  HVEL PSDAGFQDRY+VQEIIKEMAK+RP+D  G 
Sbjct: 69  ENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPIDTKGK 128

Query: 181 KSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISA 360
           K +KVLVLNEVD+LS+EAQHSLRRTMEKYSS+CRLILCCNS+SKV EA++SRCLN+RI+A
Sbjct: 129 KGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCLNVRINA 188

Query: 361 PSKEEIVKVLQHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSV 540
           PS+EEIVKVL+ VAKKE LQLP GFAARIA  SNR+LRRAILSLE C+V  YPFT +Q +
Sbjct: 189 PSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYPFTGNQVI 248

Query: 541 QSADWEQYIVEIASDIVNEQSPKRLFLVRGKLYELLVNCIPPE 669
              DWE+Y+ EIA+D++ EQSPK+LF VRGK+YELLVNCIPPE
Sbjct: 249 SPMDWEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPE 291


>tr|Q84N07|Q84N07_ORYSJ Replication factor C 38 kDa subunit OS=Oryza
           sativa subsp. japonica GN=OsRFC5 PE=2 SV=1
          Length = 354

 Score =  343 bits (879), Expect = 7e-93
 Identities = 163/223 (73%), Positives = 193/223 (86%)
 Frame = +1

Query: 1   ENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGN 180
           ENK WKI+ G+R +E+EL  +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+RP+DV G 
Sbjct: 69  ENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKNRPIDVKGK 128

Query: 181 KSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISA 360
           ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSRCLN+R++A
Sbjct: 129 RAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNVRVNA 188

Query: 361 PSKEEIVKVLQHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSV 540
           PS+++IV+VL+ + KKE LQLP GFAARIA  SNRNLRRAIL  E CKV QYPFT +Q  
Sbjct: 189 PSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQYPFTSNQVA 248

Query: 541 QSADWEQYIVEIASDIVNEQSPKRLFLVRGKLYELLVNCIPPE 669
              DWEQY+ EIA+DI+ EQSPKRLF VR K YELLVNCIPPE
Sbjct: 249 PPLDWEQYVSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPE 291


>tr|Q852K3|Q852K3_ORYSJ Os03g0792600 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0060J21.20 PE=2 SV=1
          Length = 354

 Score =  341 bits (875), Expect = 2e-92
 Identities = 162/223 (72%), Positives = 192/223 (86%)
 Frame = +1

Query: 1   ENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGN 180
           ENK WKI+ G+R +E+EL  +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+RP+D  G 
Sbjct: 69  ENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKNRPIDAKGK 128

Query: 181 KSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISA 360
           ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSRCLN+R++A
Sbjct: 129 RAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNVRVNA 188

Query: 361 PSKEEIVKVLQHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSV 540
           PS+++IV+VL+ + KKE LQLP GFAARIA  SNRNLRRAIL  E CKV QYPFT +Q  
Sbjct: 189 PSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQYPFTSNQVA 248

Query: 541 QSADWEQYIVEIASDIVNEQSPKRLFLVRGKLYELLVNCIPPE 669
              DWEQY+ EIA+DI+ EQSPKRLF VR K YELLVNCIPPE
Sbjct: 249 PPLDWEQYVSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPE 291


>tr|A3ANI3|A3ANI3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_012355 PE=4 SV=1
          Length = 418

 Score =  341 bits (875), Expect = 2e-92
 Identities = 162/223 (72%), Positives = 192/223 (86%)
 Frame = +1

Query: 1   ENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGN 180
           ENK WKI+ G+R +E+EL  +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+RP+D  G 
Sbjct: 133 ENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKNRPIDAKGK 192

Query: 181 KSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISA 360
           ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSRCLN+R++A
Sbjct: 193 RAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNVRVNA 252

Query: 361 PSKEEIVKVLQHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSV 540
           PS+++IV+VL+ + KKE LQLP GFAARIA  SNRNLRRAIL  E CKV QYPFT +Q  
Sbjct: 253 PSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQYPFTSNQVA 312

Query: 541 QSADWEQYIVEIASDIVNEQSPKRLFLVRGKLYELLVNCIPPE 669
              DWEQY+ EIA+DI+ EQSPKRLF VR K YELLVNCIPPE
Sbjct: 313 PPLDWEQYVSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPE 355


>tr|A2XMT5|A2XMT5_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_13856 PE=4 SV=1
          Length = 354

 Score =  341 bits (875), Expect = 2e-92
 Identities = 162/223 (72%), Positives = 192/223 (86%)
 Frame = +1

Query: 1   ENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGN 180
           ENK WKI+ G+R +E+EL  +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+RP+D  G 
Sbjct: 69  ENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKNRPIDAKGK 128

Query: 181 KSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISA 360
           ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSRCLN+R++A
Sbjct: 129 RAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSRCLNVRVNA 188

Query: 361 PSKEEIVKVLQHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSV 540
           PS+++IV+VL+ + KKE LQLP GFAARIA  SNRNLRRAIL  E CKV QYPFT +Q  
Sbjct: 189 PSEDQIVQVLEFIGKKENLQLPFGFAARIAAQSNRNLRRAILFFETCKVQQYPFTSNQVA 248

Query: 541 QSADWEQYIVEIASDIVNEQSPKRLFLVRGKLYELLVNCIPPE 669
              DWEQY+ EIA+DI+ EQSPKRLF VR K YELLVNCIPPE
Sbjct: 249 PPLDWEQYVSEIAADIMKEQSPKRLFAVRQKFYELLVNCIPPE 291


>tr|B6T5I0|B6T5I0_MAIZE Replication factor C subunit 5 OS=Zea mays
           PE=2 SV=1
          Length = 354

 Score =  340 bits (871), Expect = 6e-92
 Identities = 163/223 (73%), Positives = 190/223 (85%)
 Frame = +1

Query: 1   ENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGN 180
           ENK WKI+ GTR LE+EL  +SS +HVE+ PSDAGFQDRYVVQE+IKEMAK+RP+D  G 
Sbjct: 69  ENKTWKIDTGTRTLEIELAMLSSAHHVEMTPSDAGFQDRYVVQEVIKEMAKNRPIDAKGK 128

Query: 181 KSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISA 360
           ++FKVLVLNEVD+LS+EAQHSLRRTMEKYSS+CRLILCCNS+SKV EAVRSRCLN+R++A
Sbjct: 129 RAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSRCLNVRVNA 188

Query: 361 PSKEEIVKVLQHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSV 540
           PS+++IV+VL+ + KKE L LP GFAARIA  SNRNLRRAIL  E CKV QYPFT +Q  
Sbjct: 189 PSEDQIVQVLEFIGKKENLHLPAGFAARIAAQSNRNLRRAILFFETCKVQQYPFTSNQVA 248

Query: 541 QSADWEQYIVEIASDIVNEQSPKRLFLVRGKLYELLVNCIPPE 669
              DWEQY+ EIA+DI+ EQSPKRLF VR K YELLVNCIPPE
Sbjct: 249 PPLDWEQYVSEIATDILTEQSPKRLFAVRQKFYELLVNCIPPE 291


>tr|B4FER3|B4FER3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 354

 Score =  338 bits (867), Expect = 2e-91
 Identities = 162/223 (72%), Positives = 189/223 (84%)
 Frame = +1

Query: 1   ENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGN 180
           ENK WKI+ GTR  E+EL  +SS +HVE+ PSDAGFQDRYVVQE+IKEMAK+RP+D  G 
Sbjct: 69  ENKTWKIDTGTRTFEIELAMLSSAHHVEMTPSDAGFQDRYVVQEVIKEMAKNRPIDAKGK 128

Query: 181 KSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISA 360
           ++FKVLVLNEVD+LS+EAQHSLRRTMEKYSS+CRLILCCNS+SKV EAVRSRCLN+R++A
Sbjct: 129 RAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSRCLNVRVNA 188

Query: 361 PSKEEIVKVLQHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSV 540
           PS+++IV+VL+ + KKE L LP GFAARIA  SNRNLRRAIL  E CKV QYPFT +Q  
Sbjct: 189 PSEDQIVQVLEFIGKKENLHLPAGFAARIAAQSNRNLRRAILFFETCKVQQYPFTSNQVA 248

Query: 541 QSADWEQYIVEIASDIVNEQSPKRLFLVRGKLYELLVNCIPPE 669
              DWEQY+ EIA+DI+ EQSPKRLF VR K YELLVNCIPPE
Sbjct: 249 PPLDWEQYVSEIATDILTEQSPKRLFAVRQKFYELLVNCIPPE 291


>tr|A8J3U8|A8J3U8_CHLRE DNA replication factor C complex subunit 3
           OS=Chlamydomonas reinhardtii GN=RFC3 PE=4 SV=1
          Length = 356

 Score =  307 bits (787), Expect = 3e-82
 Identities = 149/223 (66%), Positives = 182/223 (81%)
 Frame = +1

Query: 1   ENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRPLDVAGN 180
           E KPWKI+  +RKLEVELTT+SSN+H+ELNP+D G  DRYVVQEIIKEMA+SRP+   G+
Sbjct: 70  ETKPWKIDLPSRKLEVELTTLSSNHHLELNPADVGSNDRYVVQEIIKEMARSRPMGADGS 129

Query: 181 KSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCLNIRISA 360
           + FKVLVLNEVDRLSKEAQ  LRRTMEKYSSACRLI+ C++ SKV+E VRSRCL +R++A
Sbjct: 130 RGFKVLVLNEVDRLSKEAQQGLRRTMEKYSSACRLIMVCSNVSKVMEPVRSRCLCVRVAA 189

Query: 361 PSKEEIVKVLQHVAKKEGLQLPLGFAARIALSSNRNLRRAILSLEACKVHQYPFTEDQSV 540
           PS  ++++VLQ VAKKE L LP  FAAR+   + RNLRRA+L LE C+  QYPF + Q  
Sbjct: 190 PSDAQVMEVLQGVAKKENLVLPEAFAARVVDYAGRNLRRALLCLEVCRAQQYPFGDSQEP 249

Query: 541 QSADWEQYIVEIASDIVNEQSPKRLFLVRGKLYELLVNCIPPE 669
           Q ADWE YI E+A +I++EQSPK+L+LVR KLYELL NC+PPE
Sbjct: 250 QRADWELYIAEVAKNIMDEQSPKQLYLVRSKLYELLANCVPPE 292