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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948234
Clone id TST38A01NGRL0002_M12
Library
Length 683
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_M12. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTCAGCACGCTGCTTTGTCTTCGCGCAGCCACAGCTGCCGCTTCTGGCTCGTCGTTGCCG
GCTGCATCACCTCGCATCCGTCTGTAGCGTGGACTCGCGTGGTGGCGCACACGCAGCGGC
AGCTCCTCCACTGCAGCTCTCGACAGCGAGAAGGCTCAATCAGCGCGTGAATCAGCACGG
TGGGCTATTCGACTCGATCACCCAACCATCGCACGTGCAGAGGCTAGGGCCTCTTCTTCC
TCCTCCTCCCTCTGCGGCTTCTCACCTCCGAAGCCACATTTTGGCAATGGCAGCTCGAAG
TGCTTGCCAGAGCTCTTCCCTCTTGAATTCCCTCACCCAGCTACCTTGCGTTCCTTTCCC
TACATCCTCCACCAACGTGAGCTTTGGTAGTTCCTGCCGTGCAAACCACCTCCCGCTTCA
TGTCACTGCATCAGCATCGGATAGCCGCAAGGCAATGAAAGTTGATGGAACGGTCTTTAC
GGACAGAACAGTGCTTAACATTAATCCCGTGGCCAAGCACGGGGCTCCATCAAGCGTACC
TGCTGCTGCTCCCATTTCTGTGGTGGCCACGGAAGTGGAGACTTTACCCTTGGATAGGTT
GAAGACTGGCTATCTCANATTCAAGGAAAACTACATAAAAAATCAAGCACTTGTGAAGTC
GCTGGCAGAAACTCAGACGCCTC
■■Homology search results ■■ -
sp_hit_id P17067
Definition sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sativum
Align length 31
Score (bit) 33.1
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948234|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_M12, 5'
         (683 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sa...    33   1.4  
sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinac...    31   5.4  
sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicoti...    30   9.1  
sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thalian...    30   9.1  

>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum
           sativum PE=1 SV=1
          Length = 328

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 17/31 (54%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 593 DRLKTGYLXFK-ENYIKNQALVKSLAETQTP 682
           +R+KTG+L FK E Y KN AL   LA+ Q+P
Sbjct: 122 ERIKTGFLHFKKEKYDKNPALYGELAKGQSP 152


>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia
           oleracea PE=1 SV=2
          Length = 319

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 569 TEVETLPLDRLKTGYLXFK-ENYIKNQALVKSLAETQTP 682
           T   + P+ R+K G++ FK E Y KN AL   L++ Q P
Sbjct: 105 TPSASYPVQRIKEGFIKFKKEKYEKNPALYGELSKGQAP 143


>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana
           tabacum PE=2 SV=1
          Length = 321

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 587 PLDRLKTGYLXFK-ENYIKNQALVKSLAETQTP 682
           P++ +K G++ FK E Y KN AL   L++ Q+P
Sbjct: 113 PVEHMKAGFIHFKTEKYEKNPALYGELSKGQSP 145


>sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thaliana
           GN=CA2 PE=1 SV=2
          Length = 259

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 587 PLDRLKTGYLXFK-ENYIKNQALVKSLAETQTP 682
           P++R+K G++ FK E Y  N AL   LA+ Q+P
Sbjct: 51  PVERIKEGFVTFKKEKYETNPALYGELAKGQSP 83
tr_hit_id Q94CE4
Definition tr|Q94CE4|Q94CE4_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
Align length 32
Score (bit) 37.4
E-value 0.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948234|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_M12, 5'
         (683 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q94CE4|Q94CE4_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    37   0.90 
tr|O64595|O64595_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    37   0.90 
tr|Q9ZUC2|Q9ZUC2_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    36   2.6  
tr|Q84Y09|Q84Y09_FLABI Carbonic anhydrase OS=Flaveria bidentis P...    35   4.5  
tr|A7PM94|A7PM94_VITVI Carbonic anhydrase OS=Vitis vinifera GN=G...    35   4.5  
tr|Q4PCH1|Q4PCH1_USTMA Predicted protein OS=Ustilago maydis GN=U...    35   4.5  
tr|A8L4Z4|A8L4Z4_FRASN Restriction endonuclease OS=Frankia sp. (...    34   9.9  

>tr|Q94CE4|Q94CE4_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
           GN=At1g70410 PE=2 SV=1
          Length = 280

 Score = 37.4 bits (85), Expect = 0.90
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 590 LDRLKTGYLXFK-ENYIKNQALVKSLAETQTP 682
           ++R+KTG+  FK E Y+KN  L   LA+TQTP
Sbjct: 71  IERIKTGFTQFKTEKYLKNSTLFNHLAKTQTP 102


>tr|O64595|O64595_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
           GN=At1g70410 PE=2 SV=1
          Length = 258

 Score = 37.4 bits (85), Expect = 0.90
 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 590 LDRLKTGYLXFK-ENYIKNQALVKSLAETQTP 682
           ++R+KTG+  FK E Y+KN  L   LA+TQTP
Sbjct: 49  IERIKTGFTQFKTEKYLKNSTLFNHLAKTQTP 80


>tr|Q9ZUC2|Q9ZUC2_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
           GN=At1g23730 PE=2 SV=1
          Length = 258

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 17/32 (53%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = +2

Query: 590 LDRLKTGYLXFK-ENYIKNQALVKSLAETQTP 682
           ++R+K+G+L FK  NY KN  L  SLA++QTP
Sbjct: 49  VERIKSGFLHFKTNNYEKNPTLYNSLAKSQTP 80


>tr|Q84Y09|Q84Y09_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2
           SV=1
          Length = 258

 Score = 35.0 bits (79), Expect = 4.5
 Identities = 16/33 (48%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +2

Query: 587 PLDRLKTGYLXFK-ENYIKNQALVKSLAETQTP 682
           P++R+KTG+  FK E Y+KN AL   L++ Q+P
Sbjct: 50  PVERIKTGFAKFKTEKYLKNPALYGELSKGQSP 82


>tr|A7PM94|A7PM94_VITVI Carbonic anhydrase OS=Vitis vinifera
           GN=GSVIVT00020732001 PE=3 SV=1
          Length = 324

 Score = 35.0 bits (79), Expect = 4.5
 Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = +2

Query: 587 PLDRLKTGYLXF-KENYIKNQALVKSLAETQTP 682
           P++R+KTG++ F KE Y KN AL   LA+ Q+P
Sbjct: 116 PVERMKTGFIYFKKEKYDKNPALHAELAKGQSP 148


>tr|Q4PCH1|Q4PCH1_USTMA Predicted protein OS=Ustilago maydis
           GN=UM02192.1 PE=4 SV=1
          Length = 210

 Score = 35.0 bits (79), Expect = 4.5
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +1

Query: 88  RGLAWWRTRSGSSSTAALDSEKAQSARESARWAIRLDHPTI 210
           + + WW+   G++    +   + +  R++A WA+R+D P++
Sbjct: 155 KAMRWWKDVDGAARDRGITKPEIEEIRDTADWAVRMDEPSM 195


>tr|A8L4Z4|A8L4Z4_FRASN Restriction endonuclease OS=Frankia sp.
           (strain EAN1pec) GN=Franean1_7063 PE=4 SV=1
          Length = 664

 Score = 33.9 bits (76), Expect = 9.9
 Identities = 19/37 (51%), Positives = 22/37 (59%)
 Frame = +1

Query: 88  RGLAWWRTRSGSSSTAALDSEKAQSARESARWAIRLD 198
           R LA  RTR G    AALD   A +AR +A+WA  LD
Sbjct: 157 RQLAAARTRHGQQVAAALDRAAAHNARIAAQWAACLD 193