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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948275
Clone id TST38A01NGRL0002_O06
Library
Length 670
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_O06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGCAAACCGCGTTTCGAAGAGAGAGAATCGTGAAGCAGAGCTTCTCCCTCCTAGTCCCCC
TCTTCCCTCTCAGATCCCTTCCCTCTTTTCCTGTTTAATGCTTTCGCAAAGATAGAGAAG
CGCGCAGACAGCCGGCAGAAAGCTCGCAGAAAGGAGCCCCCCAACCCCTTTCTTCCTTTT
GCAGGTGGAAGCCTTCAGTTTGTGGTACTCAAAGCTCAGCCATGGCGGTGCTAATGAATA
GCCTGCTTTCTCCCCCTTTTCGGCTGCTGGAGAGATAAGGTGTCAGCACGTAGAAACGCA
AGGTTAGCGAGATTGCGAAAGTTTTTTTGCGAGTGTGATCTTCGAAAGCAGTCAATTTAG
CAGGAAGCAACAGGCAAGGAAGCAGGGGGCAAGGTGGAAGGTAGGAAATTGGTAGAAGCT
CTGCAGAACAGGAGCAAGCCCACAGATCTGGTGGAACAGAGACCGGACATGGTCGTTAAG
ATGATGAAATGGCGGCCCTGGCCTTCTGTCACCTCCAAAAAGTTCCAAGTTTACCTTACT
GTTCAAGCCCTAGAAGGGCTCTCTCCTCCCTCTTCTGCTCAAGATGAGAATGTGGAGGGT
CTTATGGTTGATGTGAAGTGGAAAGGCCCCAAAAGTAGCATCTTCCCCCGGCGGAGCCTT
AAAAGACTTC
■■Homology search results ■■ -
sp_hit_id Q871U2
Definition sp|Q871U2|ATG7_NEUCR Autophagy-related protein 7 OS=Neurospora crassa
Align length 49
Score (bit) 33.9
E-value 0.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948275|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_O06, 5'
         (670 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q871U2|ATG7_NEUCR Autophagy-related protein 7 OS=Neurospora c...    34   0.80 
sp|Q86CR9|ATG7_DICDI Autophagy-related protein 7 OS=Dictyosteliu...    34   0.80 
sp|A6QXC6|ATG7_AJECN Autophagy-related protein 7 OS=Ajellomyces ...    31   5.2  
sp|P50848|YPWA_BACSU Putative metalloprotease ypwA OS=Bacillus s...    30   8.8  
sp|Q61045|SIM1_MOUSE Single-minded homolog 1 OS=Mus musculus GN=...    30   8.8  
sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40 OS=O...    30   8.8  

>sp|Q871U2|ATG7_NEUCR Autophagy-related protein 7 OS=Neurospora
           crassa GN=atg-7 PE=3 SV=1
          Length = 699

 Score = 33.9 bits (76), Expect = 0.80
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +1

Query: 364 EATGKEAGGKVEGRKLVEALQNRSKPTDLVEQRPDMVVKMMKWRPWPSV 510
           + TG E  G  + R  V  L     PT L +Q  D+ +K+MKWR  P++
Sbjct: 308 KVTGWERNGNGDLRPRVANLAEYMDPTRLADQAVDLNLKLMKWRLAPNL 356


>sp|Q86CR9|ATG7_DICDI Autophagy-related protein 7 OS=Dictyostelium
           discoideum GN=atg7 PE=3 SV=1
          Length = 707

 Score = 33.9 bits (76), Expect = 0.80
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = +1

Query: 376 KEAGGKVEGRKLVEALQNRSKPTDLVEQRPDMVVKMMKWRPWPSVTSKKFQ 528
           K++ GK+  R +  +L +   P  L EQ  D+ +K+M+WR  PS+  +K +
Sbjct: 312 KDSNGKIAPRFV--SLASTMDPLKLAEQSVDLNLKLMRWRVMPSLELEKIK 360


>sp|A6QXC6|ATG7_AJECN Autophagy-related protein 7 OS=Ajellomyces
           capsulata (strain NAm1 / WU24) GN=ATG7 PE=3 SV=1
          Length = 695

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +1

Query: 376 KEAGGKVEGRKLVEALQNRSKPTDLVEQRPDMVVKMMKWRPWPSV 510
           + A GK+ GR  V  L     P  L +Q  D+ +K+MKWR  P++
Sbjct: 329 RNAAGKLTGR--VTNLTEYMDPRRLADQSVDLNLKLMKWRISPNL 371


>sp|P50848|YPWA_BACSU Putative metalloprotease ypwA OS=Bacillus
           subtilis GN=ypwA PE=3 SV=1
          Length = 501

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 502 PSVTSKKFQVYLTVQALEGLSPPSSAQDENVEGLMVDVKWKGPKSSIFPRRSL 660
           PS+ ++K+Q YL      G++P + A     EG++ DV W G     FP  +L
Sbjct: 381 PSLWNQKYQDYL------GITPQTDA-----EGILQDVHWAGGDFGYFPSYAL 422


>sp|Q61045|SIM1_MOUSE Single-minded homolog 1 OS=Mus musculus
           GN=Sim1 PE=1 SV=3
          Length = 765

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 283 TPYLSSSRKGGESRLFISTAMAEL-*VPQTEGFHLQKEE 170
           TP +S +RKG +SRL  S + +     PQ  GFH ++ E
Sbjct: 361 TPTISDNRKGAKSRLSSSKSKSRTSPYPQYSGFHTERSE 399


>sp|Q5JKF2|RH40_ORYSJ DEAD-box ATP-dependent RNA helicase 40
           OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2
           SV=2
          Length = 792

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 193 GFHLQKEERGWGAPFCELSAGCLRASLSLRKH*TGKEGRDLRGKRGTRREK 41
           G H + + R  G      S+G L +S S R+H  G +GR  R  RG  R +
Sbjct: 549 GSHSELDSRYGGRDGLSGSSGRLDSSRSSRRHDYGDDGRSRRSGRGRSRSR 599
tr_hit_id Q9SF22
Definition tr|Q9SF22|Q9SF22_ARATH F26K24.5 protein OS=Arabidopsis thaliana
Align length 67
Score (bit) 64.7
E-value 5.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948275|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_O06, 5'
         (670 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SF22|Q9SF22_ARATH F26K24.5 protein OS=Arabidopsis thaliana ...    65   5e-09
tr|Q0WKW4|Q0WKW4_ARATH Putative uncharacterized protein At3g1176...    65   5e-09
tr|A7Q079|A7Q079_VITVI Chromosome chr8 scaffold_41, whole genome...    63   1e-08
tr|A9T1E1|A9T1E1_PHYPA Predicted protein OS=Physcomitrella paten...    58   6e-07
tr|Q9FMC4|Q9FMC4_ARATH Genomic DNA, chromosome 5, P1 clone:MUK11...    49   3e-04
tr|Q10G00|Q10G00_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    45   0.004
tr|Q2QM21|Q2QM21_ORYSJ Os12g0620600 protein OS=Oryza sativa subs...    40   0.10 
tr|B8AVW7|B8AVW7_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.17 
tr|A2ZMV2|A2ZMV2_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.23 
tr|Q60DI5|Q60DI5_ORYSJ Os03g0649000 protein OS=Oryza sativa subs...    39   0.30 
tr|B3ED75|B3ED75_CHLL2 UbiA prenyltransferase OS=Chlorobium limi...    35   4.2  
tr|B2B4M3|B2B4M3_PODAN Predicted CDS Pa_2_1770 OS=Podospora anse...    35   5.6  
tr|B1ZQN5|B1ZQN5_OPITP TonB-dependent receptor plug OS=Opitutus ...    34   7.3  

>tr|Q9SF22|Q9SF22_ARATH F26K24.5 protein OS=Arabidopsis thaliana
           GN=At3g11760 PE=4 SV=1
          Length = 702

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
 Frame = +1

Query: 469 MVVKMMKWRPWPSVTSKKFQVYLTVQALEGLSPPSSAQDENVEGLMVDVKWKGPKSSIFP 648
           MVVKMMKWRPWP + ++K++V L+V+ LEG         E  + L V+++WKGPK+++  
Sbjct: 1   MVVKMMKWRPWPPLVTRKYEVKLSVKKLEGWDLVREGVPEK-DRLTVEIRWKGPKATLGS 59

Query: 649 -RRSLKR 666
            RRS+KR
Sbjct: 60  LRRSVKR 66


>tr|Q0WKW4|Q0WKW4_ARATH Putative uncharacterized protein At3g11760
           OS=Arabidopsis thaliana GN=At3g11760 PE=2 SV=1
          Length = 394

 Score = 64.7 bits (156), Expect = 5e-09
 Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 1/67 (1%)
 Frame = +1

Query: 469 MVVKMMKWRPWPSVTSKKFQVYLTVQALEGLSPPSSAQDENVEGLMVDVKWKGPKSSIFP 648
           MVVKMMKWRPWP + ++K++V L+V+ LEG         E  + L V+++WKGPK+++  
Sbjct: 1   MVVKMMKWRPWPPLVTRKYEVKLSVKKLEGWDLVREGVPEK-DRLTVEIRWKGPKATLGS 59

Query: 649 -RRSLKR 666
            RRS+KR
Sbjct: 60  LRRSVKR 66


>tr|A7Q079|A7Q079_VITVI Chromosome chr8 scaffold_41, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027182001
           PE=4 SV=1
          Length = 715

 Score = 63.2 bits (152), Expect = 1e-08
 Identities = 32/69 (46%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
 Frame = +1

Query: 469 MVVKMMKWRPWPSVTSKKFQVYLTVQALEGLSPPSSAQDENVEG--LMVDVKWKGPKSSI 642
           MVVKMM+WRPWP +  +K++V L V+ +EG      A +E  EG  ++V+++WKGPK S+
Sbjct: 1   MVVKMMRWRPWPPLIPRKYEVKLVVRRMEGW---GCAGEEGAEGRRVVVEIRWKGPKISL 57

Query: 643 FP-RRSLKR 666
              RR++KR
Sbjct: 58  SSLRRTVKR 66


>tr|A9T1E1|A9T1E1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_138790 PE=4 SV=1
          Length = 706

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 35/67 (52%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
 Frame = +1

Query: 469 MVVKMMKWRPWPSVTSKKFQVYLTVQALEGLSPPSSAQDENVEGLMVDVKWKGPKSSIFP 648
           MV+K MKW P     SKK+QV L +  LEGLSP  S + +    L VD+KWKGPKS++  
Sbjct: 1   MVIKAMKW-PLRQHFSKKYQVNLVLNKLEGLSPNDSEEAK----LYVDLKWKGPKSALGS 55

Query: 649 R-RSLKR 666
           R RS+KR
Sbjct: 56  RFRSMKR 62


>tr|Q9FMC4|Q9FMC4_ARATH Genomic DNA, chromosome 5, P1 clone:MUK11
           OS=Arabidopsis thaliana GN=At5g04860 PE=4 SV=1
          Length = 782

 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 15/82 (18%)
 Frame = +1

Query: 469 MVVKM---MKWRPWPSVTSKKFQVYLTVQALEGLSPPSSAQDENVEGL------------ 603
           MVVKM   M+W PWP + + KF V + V  ++GL       D++ +              
Sbjct: 1   MVVKMKQIMRWPPWPPLFAVKFDVIVVVHQMDGLLDSDGGGDDSTDQSQRGGGTTTRKRP 60

Query: 604 MVDVKWKGPKSSIFPRRSLKRL 669
           +V++KWKGPKS    R  ++ L
Sbjct: 61  VVEIKWKGPKSVTLKRSVVRNL 82


>tr|Q10G00|Q10G00_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=LOC_Os03g44670 PE=4 SV=1
          Length = 784

 Score = 45.1 bits (105), Expect = 0.004
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
 Frame = +1

Query: 469 MVVKMMKWRPWPSVTSKKFQVYLTVQALEGLSPPSSAQDENVEG---------LMVDVKW 621
           MV +MM+W   P+  ++KF+V L V+  EGL  P +A  E+            +  +V+W
Sbjct: 1   MVARMMRWPRPPA--ARKFRVRLVVRRAEGLQQPCAAAAEHAASAEAEAPPTRVAAEVRW 58

Query: 622 KGPKSSIFPRRSLKR 666
           KGPK+S  P  SL+R
Sbjct: 59  KGPKAS--PLSSLRR 71


>tr|Q2QM21|Q2QM21_ORYSJ Os12g0620600 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0620600 PE=2 SV=1
          Length = 753

 Score = 40.4 bits (93), Expect = 0.10
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
 Frame = +1

Query: 469 MVVKMMKWRPWPSVTSKKFQVYLTVQALEGLSPPSSAQDENVE----GLMVDVKWKGPKS 636
           MV +M  W P     ++KF+V L V+  EGL+  ++A   +       + V+V+WKGPK+
Sbjct: 1   MVARMWPWPP----PARKFRVRLVVRRAEGLTATATATASSSPVAEAKVAVEVRWKGPKA 56

Query: 637 SIFPRRSLKRL 669
           S  P  SL+R+
Sbjct: 57  S--PLGSLRRV 65


>tr|B8AVW7|B8AVW7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_16445 PE=4 SV=1
          Length = 684

 Score = 39.7 bits (91), Expect = 0.17
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 9/71 (12%)
 Frame = +1

Query: 481 MMKWRPWPSVTSKKFQVYLTVQALEGLSPPSSAQDENVEG---------LMVDVKWKGPK 633
           MM+W   P+  ++KF+V L V+  EGL  P +A  E+            +  +++WKGPK
Sbjct: 1   MMRWPRPPA--ARKFRVRLVVRRAEGLQQPCAAAAEHAASAEAEAPPTRVAAELRWKGPK 58

Query: 634 SSIFPRRSLKR 666
           +S  P  SL+R
Sbjct: 59  AS--PLSSLRR 67


>tr|A2ZMV2|A2ZMV2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_39155 PE=4 SV=1
          Length = 749

 Score = 39.3 bits (90), Expect = 0.23
 Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
 Frame = +1

Query: 496 PWPSVTSKKFQVYLTVQALEGLSPPSSAQDENVE----GLMVDVKWKGPKSSIFPRRSLK 663
           PWP   ++KF+V L V+  EGL+  ++A   +       + V+V+WKGPK+S  P  SL+
Sbjct: 3   PWPP-PARKFRVRLVVRRAEGLTATATATASSSPVAEAKVAVEVRWKGPKAS--PLGSLR 59

Query: 664 RL 669
           R+
Sbjct: 60  RV 61


>tr|Q60DI5|Q60DI5_ORYSJ Os03g0649000 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0649000 PE=4 SV=1
          Length = 779

 Score = 38.9 bits (89), Expect = 0.30
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
 Frame = +1

Query: 484 MKWRPWPSVTSKKFQVYLTVQALEGLSPPSSAQDENVEG---------LMVDVKWKGPKS 636
           M+W   P+  ++KF+V L V+  EGL  P +A  E+            +  +V+WKGPK+
Sbjct: 1   MRWPRPPA--ARKFRVRLVVRRAEGLQQPCAAAAEHAASAEAEAPPTRVAAEVRWKGPKA 58

Query: 637 SIFPRRSLKR 666
           S  P  SL+R
Sbjct: 59  S--PLSSLRR 66