DK948287 |
Clone id |
TST38A01NGRL0002_O18 |
Library |
TST38 |
Length |
678 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_O18. 5' end sequence. |
Accession |
DK948287 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL2446Contig1 |
Sequence |
CTGTGACAGAATTAAAGTTTCTTGCCCTTTGCCTTCTGTGCTGCTCGTCATGGCTTCCAA GGGTTCCTCTCTTCTACCTTCACACCTGGTAAAGCTTTTAGATGCAGATGGCTATCACAA AGCTCGAGCCAATAACAATCATTATTACTACATTAGCCGTGTCACCATGCGACACACGAA TTGGCTCAAGATCTTCTGCTTCTTCTCTTTTGTGGCGATACTTGCTTGGGGTTGTTTCTT CCAAGGCCTGCCTGTTTATCCTGGTCTATATTTTGGTTGCTCCTCTGCAGCGTGGAGAAA GGCAGTACTGCAATCGGCAACTAGGCAGGAGGGCGGCCAGATGACCGTGCTTGTCACTGG AGCAGCTGGTTTTGTGGGATCACATGTGTCCTTGGCTTTGAAGAGTCGGGGGGATGGTGT GGTAGGGCTAGATAACTTCAATGACTACTATCCTGTTGCCTTGAAAAGGGCCAGAGCAGC AAACTTGCAAAAGGCTGGCATATTCATTGTTGAGGCTGATCTTAATGATCAAGTGGTTTT GTCAAAGCTGTTCAGCCTAGTTCGTTTCACCCATGTTCTTCATTTAGCAGCTCAGGCGGG GGTCCGTTATGCTGTGAAGAACCCACTAGCCTATGTTCACAGTAATGTTGGTGGCTTTGT CACTCTGCTTGAACAGTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O81312 |
Definition |
sp|O81312|GAE3_ARATH UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana |
Align length |
128 |
Score (bit) |
173.0 |
E-value |
9.0e-43 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RIM4 |
Definition |
tr|A9RIM4|A9RIM4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
185 |
Score (bit) |
179.0 |
E-value |
1.0e-43 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948287|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0002_O18, 5' (678 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RIM4|A9RIM4_PHYPA Predicted protein OS=Physcomitrella paten... 179 1e-43 tr|A9SSQ9|A9SSQ9_PHYPA Predicted protein OS=Physcomitrella paten... 177 7e-43 tr|A7QGQ6|A7QGQ6_VITVI Chromosome chr16 scaffold_94, whole genom... 176 1e-42 tr|A9SLN5|A9SLN5_PHYPA Predicted protein OS=Physcomitrella paten... 174 4e-42 tr|A7Q721|A7Q721_VITVI Chromosome chr5 scaffold_58, whole genome... 172 1e-41 tr|A7PYE9|A7PYE9_VITVI Chromosome chr15 scaffold_37, whole genom... 172 1e-41 tr|A7PYE7|A7PYE7_VITVI Chromosome chr15 scaffold_37, whole genom... 172 1e-41 tr|A5BN70|A5BN70_VITVI Putative uncharacterized protein OS=Vitis... 172 1e-41 tr|A7PYE8|A7PYE8_VITVI Chromosome chr15 scaffold_37, whole genom... 172 2e-41 tr|A5C3Y4|A5C3Y4_VITVI Putative uncharacterized protein OS=Vitis... 172 2e-41 tr|A9S6M5|A9S6M5_PHYPA Predicted protein OS=Physcomitrella paten... 171 5e-41 tr|A9RD94|A9RD94_PHYPA Predicted protein OS=Physcomitrella paten... 171 5e-41 tr|B8LKW2|B8LKW2_PICSI Putative uncharacterized protein OS=Picea... 166 1e-39 tr|A9S3V6|A9S3V6_PHYPA Predicted protein OS=Physcomitrella paten... 166 1e-39 tr|Q2PEY6|Q2PEY6_TRIPR Putative NAD dependent epimerase OS=Trifo... 166 2e-39 tr|A9P9K8|A9P9K8_POPTR Putative uncharacterized protein OS=Popul... 166 2e-39 tr|Q304Y2|Q304Y2_MAIZE UDP-glucuronic acid 4-epimerase OS=Zea ma... 165 3e-39 tr|B4F9K7|B4F9K7_MAIZE Putative uncharacterized protein OS=Zea m... 165 3e-39 tr|A9NXH8|A9NXH8_PICSI Putative uncharacterized protein OS=Picea... 165 3e-39 tr|Q6K9M5|Q6K9M5_ORYSJ Os02g0791500 protein OS=Oryza sativa subs... 164 4e-39 tr|A2XAG1|A2XAG1_ORYSI Putative uncharacterized protein OS=Oryza... 164 4e-39 tr|A9TFC1|A9TFC1_PHYPA Predicted protein OS=Physcomitrella paten... 163 8e-39 tr|A5B5D4|A5B5D4_VITVI Putative uncharacterized protein OS=Vitis... 163 8e-39 tr|B6SI92|B6SI92_MAIZE Putative uncharacterized protein OS=Zea m... 163 1e-38 tr|Q2MJA7|Q2MJA7_ORYSJ Os03g0249500 protein OS=Oryza sativa subs... 162 1e-38 tr|A9RZV8|A9RZV8_PHYPA Predicted protein OS=Physcomitrella paten... 160 5e-38 tr|Q0J0N3|Q0J0N3_ORYSJ Os09g0504000 protein OS=Oryza sativa subs... 160 7e-38 tr|B8BDA3|B8BDA3_ORYSI Putative uncharacterized protein OS=Oryza... 160 7e-38 tr|A3C0E0|A3C0E0_ORYSJ Putative uncharacterized protein OS=Oryza... 160 7e-38 tr|Q84QV1|Q84QV1_ORYSJ Putative type 1 capsule synthesis gene(Ca... 159 2e-37
>tr|A9RIM4|A9RIM4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_55414 PE=4 SV=1 Length = 446
Score = 179 bits (454), Expect = 1e-43 Identities = 98/185 (52%), Positives = 124/185 (67%), Gaps = 10/185 (5%) Frame = +2
Query: 149 YISRVTMR--HTNWLKIFCFFSFV-AILAWGCFFQGLPVYPGLYFGCS------SAAWRK 301 Y+ R+T R + KI C S + A+ + + GLP Y G S W K Sbjct: 24 YLGRMTSRWHSSTATKILCTTSILLALTIFAVLWMGLPRGSEGYSGQRTQGFQRSHEWEK 83
Query: 302 AVLQSA-TRQEGGQMTVLVTGAAGFVGSHVSLALKSRGDGVVGLDNFNDYYPVALKRARA 478 V+ S T +E +TVLVTGAAGFVG+HVSLALK RGDGVVGLDNFN YY V+LKRAR Sbjct: 84 KVIHSCVTNREDNALTVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNSYYEVSLKRARQ 143
Query: 479 ANLQKAGIFIVEADLNDQVVLSKLFSLVRFTHVLHLAAQAGVRYAVKNPLAYVHSNVGGF 658 L K G+F+VE D+ND+ +L LF +V+FTH++HLAAQAGVRYA++NPL+YVHSN+ G Sbjct: 144 ELLNKHGVFVVEGDINDKFLLESLFEVVQFTHIMHLAAQAGVRYAMQNPLSYVHSNIAGL 203
Query: 659 VTLLE 673 V + E Sbjct: 204 VNIFE 208
>tr|A9SSQ9|A9SSQ9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_166362 PE=4 SV=1 Length = 450
Score = 177 bits (448), Expect = 7e-43 Identities = 87/131 (66%), Positives = 102/131 (77%) Frame = +2
Query: 281 SSAAWRKAVLQSATRQEGGQMTVLVTGAAGFVGSHVSLALKSRGDGVVGLDNFNDYYPVA 460 S W K V QS T + + VLVTGAAGFVGSHVSLALK RGDG+VG+DNFNDYY V+ Sbjct: 87 SDHLWDKKVRQSCTPKRENGLVVLVTGAAGFVGSHVSLALKKRGDGLVGIDNFNDYYEVS 146
Query: 461 LKRARAANLQKAGIFIVEADLNDQVVLSKLFSLVRFTHVLHLAAQAGVRYAVKNPLAYVH 640 LKRAR L K GIF++E D+ND + S LF +VRFTHV+HLAAQAGVRYA++NP++YVH Sbjct: 147 LKRARQEMLLKQGIFVIEDDINDAALWSHLFEMVRFTHVMHLAAQAGVRYAMQNPMSYVH 206
Query: 641 SNVGGFVTLLE 673 SNV G VTL E Sbjct: 207 SNVAGLVTLFE 217
>tr|A7QGQ6|A7QGQ6_VITVI Chromosome chr16 scaffold_94, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00038436001 PE=4 SV=1 Length = 400
Score = 176 bits (446), Expect = 1e-42 Identities = 84/127 (66%), Positives = 105/127 (82%) Frame = +2
Query: 293 WRKAVLQSATRQEGGQMTVLVTGAAGFVGSHVSLALKSRGDGVVGLDNFNDYYPVALKRA 472 W + VL SA+ + TVLVTGAAGF+GSHVS AL++RGDGVVGLDNFN+YY V+LK Sbjct: 55 WEQRVLSSASPRSSTGSTVLVTGAAGFIGSHVSAALRNRGDGVVGLDNFNNYYDVSLKHD 114
Query: 473 RAANLQKAGIFIVEADLNDQVVLSKLFSLVRFTHVLHLAAQAGVRYAVKNPLAYVHSNVG 652 R A L+ +G+FIV+ D+NDQV+L KLFS+V+FTHV+HLAAQAGVRYA+KNP +Y+ SN+ Sbjct: 115 RRAMLESSGVFIVDGDINDQVLLKKLFSIVQFTHVMHLAAQAGVRYAMKNPASYIDSNLS 174
Query: 653 GFVTLLE 673 GFV LLE Sbjct: 175 GFVNLLE 181
>tr|A9SLN5|A9SLN5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_165615 PE=4 SV=1 Length = 446
Score = 174 bits (442), Expect = 4e-42 Identities = 82/131 (62%), Positives = 102/131 (77%) Frame = +2
Query: 281 SSAAWRKAVLQSATRQEGGQMTVLVTGAAGFVGSHVSLALKSRGDGVVGLDNFNDYYPVA 460 S W + +LQS T + + VLVTGAAGFVGSHVSLALK RGDG+VG+DNFNDYY V+ Sbjct: 85 SDKVWDQKLLQSCTPERDDGLVVLVTGAAGFVGSHVSLALKKRGDGLVGIDNFNDYYEVS 144
Query: 461 LKRARAANLQKAGIFIVEADLNDQVVLSKLFSLVRFTHVLHLAAQAGVRYAVKNPLAYVH 640 LKRAR L K GIF++E D+ND +L LF ++FTHV+HLAAQAGVRYA++NP++Y+H Sbjct: 145 LKRARQKLLLKQGIFVIEGDINDAALLKHLFDRIQFTHVMHLAAQAGVRYAMQNPMSYIH 204
Query: 641 SNVGGFVTLLE 673 SN+ G VTL E Sbjct: 205 SNIAGLVTLFE 215
>tr|A7Q721|A7Q721_VITVI Chromosome chr5 scaffold_58, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00031642001 PE=4 SV=1 Length = 451
Score = 172 bits (437), Expect = 1e-41 Identities = 87/131 (66%), Positives = 101/131 (77%) Frame = +2
Query: 281 SSAAWRKAVLQSATRQEGGQMTVLVTGAAGFVGSHVSLALKSRGDGVVGLDNFNDYYPVA 460 S A+W K V S+T + +VLVTGA GFVG+H SLALK RGDGV+GLDNFNDYY + Sbjct: 79 SGASWEKQVRHSSTPRRPNGFSVLVTGAGGFVGTHCSLALKKRGDGVLGLDNFNDYYDPS 138
Query: 461 LKRARAANLQKAGIFIVEADLNDQVVLSKLFSLVRFTHVLHLAAQAGVRYAVKNPLAYVH 640 LKRAR A L K IFIVE DLND +LSKLF +V FTH+LHLAAQAGVRYA++NP +YV Sbjct: 139 LKRARQAMLSKHQIFIVEGDLNDAPLLSKLFDMVPFTHILHLAAQAGVRYAMQNPQSYVR 198
Query: 641 SNVGGFVTLLE 673 SN+ GFV LLE Sbjct: 199 SNIAGFVNLLE 209
>tr|A7PYE9|A7PYE9_VITVI Chromosome chr15 scaffold_37, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026412001 PE=4 SV=1 Length = 418
Score = 172 bits (437), Expect = 1e-41 Identities = 85/128 (66%), Positives = 101/128 (78%) Frame = +2
Query: 290 AWRKAVLQSATRQEGGQMTVLVTGAAGFVGSHVSLALKSRGDGVVGLDNFNDYYPVALKR 469 AW K V SA + ++VLVTGAAGFVG+HVS ALK RGDGVVGLDNFNDYY +LKR Sbjct: 71 AWEKRVRSSAKVRARNGISVLVTGAAGFVGTHVSAALKRRGDGVVGLDNFNDYYDPSLKR 130
Query: 470 ARAANLQKAGIFIVEADLNDQVVLSKLFSLVRFTHVLHLAAQAGVRYAVKNPLAYVHSNV 649 AR A L++ G+FIVE D+ND +L KLF +V FTHV+HLAAQAGVRYA++NP +YVHSN+ Sbjct: 131 ARQALLERTGVFIVEGDINDSELLKKLFDVVTFTHVMHLAAQAGVRYAMENPSSYVHSNI 190
Query: 650 GGFVTLLE 673 G V LLE Sbjct: 191 AGLVNLLE 198
>tr|A7PYE7|A7PYE7_VITVI Chromosome chr15 scaffold_37, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026410001 PE=4 SV=1 Length = 418
Score = 172 bits (437), Expect = 1e-41 Identities = 97/202 (48%), Positives = 125/202 (61%), Gaps = 4/202 (1%) Frame = +2
Query: 80 SHLVKLLDADGYHKARANNNHYYYISRVTMRHTNWLKIFCFFSFVAILAWGCFFQGLPVY 259 SHL + G K + ++++T +L + F F++ + LP Sbjct: 2 SHLDNIPSTPGKFKMEKRLRWHSSLAKLTFWSFVFLGLIFIFFFLSPSS-----SSLPSD 56
Query: 260 PGLY----FGCSSAAWRKAVLQSATRQEGGQMTVLVTGAAGFVGSHVSLALKSRGDGVVG 427 P + AW K V SA + ++VLVTGAAGFVG+HVS ALK RGDGVVG Sbjct: 57 PSRRSLRTYSWGGPAWEKRVRSSAKVRARNGISVLVTGAAGFVGTHVSAALKRRGDGVVG 116
Query: 428 LDNFNDYYPVALKRARAANLQKAGIFIVEADLNDQVVLSKLFSLVRFTHVLHLAAQAGVR 607 LDNFNDYY +LKRAR A L++ G+FIVE D+ND +L KLF +V FTHV+HLAAQAGVR Sbjct: 117 LDNFNDYYDPSLKRARQALLERTGVFIVEGDINDSELLRKLFEVVAFTHVMHLAAQAGVR 176
Query: 608 YAVKNPLAYVHSNVGGFVTLLE 673 YA++NP +YVHSN+ G V LLE Sbjct: 177 YAMENPSSYVHSNIAGLVNLLE 198
>tr|A5BN70|A5BN70_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041351 PE=4 SV=1 Length = 459
Score = 172 bits (437), Expect = 1e-41 Identities = 87/131 (66%), Positives = 101/131 (77%) Frame = +2
Query: 281 SSAAWRKAVLQSATRQEGGQMTVLVTGAAGFVGSHVSLALKSRGDGVVGLDNFNDYYPVA 460 S A+W K V S+T + +VLVTGA GFVG+H SLALK RGDGV+GLDNFNDYY + Sbjct: 79 SGASWEKQVRHSSTPRRPNGFSVLVTGAGGFVGTHCSLALKKRGDGVLGLDNFNDYYDPS 138
Query: 461 LKRARAANLQKAGIFIVEADLNDQVVLSKLFSLVRFTHVLHLAAQAGVRYAVKNPLAYVH 640 LKRAR A L K IFIVE DLND +LSKLF +V FTH+LHLAAQAGVRYA++NP +YV Sbjct: 139 LKRARQAMLSKHQIFIVEGDLNDAPLLSKLFDMVPFTHILHLAAQAGVRYAMQNPQSYVR 198
Query: 641 SNVGGFVTLLE 673 SN+ GFV LLE Sbjct: 199 SNIAGFVNLLE 209
>tr|A7PYE8|A7PYE8_VITVI Chromosome chr15 scaffold_37, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026411001 PE=4 SV=1 Length = 418
Score = 172 bits (436), Expect = 2e-41 Identities = 84/128 (65%), Positives = 101/128 (78%) Frame = +2
Query: 290 AWRKAVLQSATRQEGGQMTVLVTGAAGFVGSHVSLALKSRGDGVVGLDNFNDYYPVALKR 469 AW K V SA + ++VLVTGAAGFVG+HVS ALK RGDGV+GLDNFNDYY +LKR Sbjct: 71 AWEKRVRSSAKVRARNGISVLVTGAAGFVGTHVSAALKRRGDGVIGLDNFNDYYDPSLKR 130
Query: 470 ARAANLQKAGIFIVEADLNDQVVLSKLFSLVRFTHVLHLAAQAGVRYAVKNPLAYVHSNV 649 AR A L++ G+FIVE D+ND +L KLF +V FTHV+HLAAQAGVRYA++NP +YVHSN+ Sbjct: 131 ARQALLERTGVFIVEGDINDSKLLKKLFEVVAFTHVMHLAAQAGVRYAMENPSSYVHSNI 190
Query: 650 GGFVTLLE 673 G V LLE Sbjct: 191 AGLVNLLE 198
>tr|A5C3Y4|A5C3Y4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004388 PE=4 SV=1 Length = 427
Score = 172 bits (435), Expect = 2e-41 Identities = 97/202 (48%), Positives = 124/202 (61%), Gaps = 4/202 (1%) Frame = +2
Query: 80 SHLVKLLDADGYHKARANNNHYYYISRVTMRHTNWLKIFCFFSFVAILAWGCFFQGLPVY 259 SHL + G K + ++++T +L + F F++ + LP Sbjct: 2 SHLDNIPSTPGKFKMEKRLRWHSSLAKLTFWSFVFLGLIFIFFFLSPSS-----SSLPSD 56
Query: 260 PGLY----FGCSSAAWRKAVLQSATRQEGGQMTVLVTGAAGFVGSHVSLALKSRGDGVVG 427 P + AW K V SA ++VLVTGAAGFVG+HVS ALK RGDGVVG Sbjct: 57 PSRRSLRTYSWGGPAWEKRVRSSAKVXARNGISVLVTGAAGFVGTHVSAALKRRGDGVVG 116
Query: 428 LDNFNDYYPVALKRARAANLQKAGIFIVEADLNDQVVLSKLFSLVRFTHVLHLAAQAGVR 607 LDNFNDYY +LKRAR A L++ G+FIVE D+ND +L KLF +V FTHV+HLAAQAGVR Sbjct: 117 LDNFNDYYDPSLKRARQALLERTGVFIVEGDINDSELLRKLFEVVAFTHVMHLAAQAGVR 176
Query: 608 YAVKNPLAYVHSNVGGFVTLLE 673 YA++NP +YVHSN+ G V LLE Sbjct: 177 YAMENPSSYVHSNIAGLVNLLE 198
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