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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948296
Clone id TST38A01NGRL0002_P03
Library
Length 676
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_P03. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GCAGCCATGGCGCTCTGTGCTTCTACTTCGTCTTCTTTCCGCCTTAACCCGAACGCTCCC
TTCTTCGTCCCCGCCGCCTACTCTACTGTCGAAGATTTCTCGGGCGAGTGGTGGAATCTT
GTGCAGACTTCGCCTGCCTTTCGAGAGTATTGGCTCGCAGAACGATTTGATCCAGAAATG
CAGCTCGCTTCCGAGTTCGACATGCTCGATCTTCTGGATCTGGACTCAGCAGAGGAGGAC
TATCTGCCTGCTTCAAGCATGGATCTGAAGGAGTTTGCACGCCTGTCGGGCTGGAAAGAA
GAAGGCCCACCTATGAAGCTTGGCAGACGTCCATTCAGTCCCCTGCCATACCTCGACAAG
CCCTTGAAGGTATCACAGCCTCAAAAGCCTGGGATGCGCAAGATCCACCAGCCTCGCTGA
ACGCAGATCAGTCAGCTTGTTGAAAGTGTTACTGCTCGTTTCCTTTTGTACAGATAGCTA
GGACAACAGCAATTGCTTTCCCTTTGAGGTTTCTATGCGTCTGTGAGAGGGGTTTGAAAG
CTCTGAACCCTCATAGAGGTAGATCTCACGTTTACTGGGAGGGTTTTTCATTTCCTCATT
GTAAATGACCTTTAGAAGCTCACTGAATAGCTCTGTAGTTAATGAAGCTTTGTTCTGTCA
AAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P18091
Definition sp|P18091|ACTN_DROME Alpha-actinin, sarcomeric OS=Drosophila melanogaster
Align length 51
Score (bit) 32.7
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948296|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_P03, 5'
         (659 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18091|ACTN_DROME Alpha-actinin, sarcomeric OS=Drosophila mel...    33   1.7  
sp|Q90734|ACTN4_CHICK Alpha-actinin-4 OS=Gallus gallus GN=ACTN4 ...    31   5.1  
sp|Q3ZC55|ACTN2_BOVIN Alpha-actinin-2 OS=Bos taurus GN=ACTN2 PE=...    31   5.1  
sp|P35609|ACTN2_HUMAN Alpha-actinin-2 OS=Homo sapiens GN=ACTN2 P...    31   6.6  
sp|P20111|ACTN2_CHICK Alpha-actinin-2 OS=Gallus gallus GN=ACTN2 ...    31   6.6  
sp|A1K3Q2|THIC_AZOSB Thiamine biosynthesis protein thiC OS=Azoar...    30   8.6  
sp|P56645|PER3_HUMAN Period circadian protein homolog 3 OS=Homo ...    30   8.6  

>sp|P18091|ACTN_DROME Alpha-actinin, sarcomeric OS=Drosophila
           melanogaster GN=Actn PE=2 SV=2
          Length = 924

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 52  NAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAE--RFDPEMQLASEF 198
           N P ++P    TV D S  W  L     AF E+ LAE  R +    LA +F
Sbjct: 381 NRPAYLPTEGKTVSDISNSWKGLELAEKAFEEWLLAETMRLERLEHLAQKF 431


>sp|Q90734|ACTN4_CHICK Alpha-actinin-4 OS=Gallus gallus GN=ACTN4
           PE=1 SV=1
          Length = 904

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
 Frame = +1

Query: 52  NAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAE--RFDPEMQLASEFXXXXXXXXX 225
           N P F+P+    V D +  W +L Q    + E+ L E  R +P   LA +F         
Sbjct: 361 NRPAFMPSEGRMVSDINTGWQHLEQAEKGYEEWLLNEIRRLEPLDHLAEKFRQKASIHEA 420

Query: 226 SAE--------EDYLPASSMDLKEFAR 282
             E        +DY  A+  D+K   R
Sbjct: 421 WTEGKEAMLKQKDYETATLSDIKALIR 447


>sp|Q3ZC55|ACTN2_BOVIN Alpha-actinin-2 OS=Bos taurus GN=ACTN2 PE=2
           SV=1
          Length = 894

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 52  NAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAE--RFDPEMQLASEF 198
           N P F+P+    V D +G W  L Q    + E+ L E  R +    LA +F
Sbjct: 356 NRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERVEHLAEKF 406


>sp|P35609|ACTN2_HUMAN Alpha-actinin-2 OS=Homo sapiens GN=ACTN2 PE=1
           SV=1
          Length = 894

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 52  NAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAE--RFDPEMQLASEF 198
           N P F+P+    V D +G W  L Q    + E+ L E  R +    LA +F
Sbjct: 356 NRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKF 406


>sp|P20111|ACTN2_CHICK Alpha-actinin-2 OS=Gallus gallus GN=ACTN2
           PE=2 SV=1
          Length = 897

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 52  NAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAE--RFDPEMQLASEF 198
           N P F+P+    V D +G W  L Q    + E+ L E  R +    LA +F
Sbjct: 359 NRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKF 409


>sp|A1K3Q2|THIC_AZOSB Thiamine biosynthesis protein thiC OS=Azoarcus
           sp. (strain BH72) GN=thiC PE=3 SV=1
          Length = 638

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 19  ASTSSSFRLNPNAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAERFDPEM--QLAS 192
           + T +SF   PN P FV        D + +  ++    PA R  W+AER D E    L+S
Sbjct: 47  SDTPASFGAEPNPPIFVYDCSGPYTDPAAK-IDIRSGLPALRAGWIAERGDTEQLADLSS 105

Query: 193 EF 198
           E+
Sbjct: 106 EY 107


>sp|P56645|PER3_HUMAN Period circadian protein homolog 3 OS=Homo
           sapiens GN=PER3 PE=2 SV=3
          Length = 1201

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +1

Query: 244 LPASSMDLKEFARLSGWKE--EGPPMKLGRRPFS--PLPYLDKPLKVSQPQKP 390
           LPA++   +E+A      E   GPP+  G +P+   P PYLD  + V  P  P
Sbjct: 804 LPAATSPGREYAAPGTAPEGLHGPPLSEGLQPYPAFPFPYLDTFMTVFLPDPP 856
tr_hit_id Q6ELF9
Definition tr|Q6ELF9|Q6ELF9_CUCSA Poly(A)-binding protein C-terminal interacting protein 6 OS=Cucumis sativus
Align length 57
Score (bit) 82.8
E-value 2.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948296|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_P03, 5'
         (659 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6ELF9|Q6ELF9_CUCSA Poly(A)-binding protein C-terminal intera...    83   2e-14
tr|A9NXH7|A9NXH7_PICSI Putative uncharacterized protein OS=Picea...    77   9e-13
tr|Q5MEE7|Q5MEE7_PSEMZ Early response to dehydration 15-like pro...    75   3e-12
tr|Q5MEE1|Q5MEE1_PSEMZ Early response to dehydration 15-like pro...    75   3e-12
tr|Q5MED0|Q5MED0_PSEMZ Early response to dehydration 15-like pro...    75   3e-12
tr|A9NPN1|A9NPN1_PICSI Putative uncharacterized protein OS=Picea...    75   3e-12
tr|A9NNL5|A9NNL5_PICSI Putative uncharacterized protein OS=Picea...    75   3e-12
tr|Q9LKW3|Q9LKW3_SOLLC Dehydration-induced protein ERD15 OS=Sola...    71   7e-11
tr|A9T8Q4|A9T8Q4_PHYPA Predicted protein OS=Physcomitrella paten...    71   7e-11
tr|A9TZJ9|A9TZJ9_PHYPA Predicted protein OS=Physcomitrella paten...    70   9e-11
tr|A0EPI4|A0EPI4_CAPAN ERD15 OS=Capsicum annuum PE=2 SV=1              69   2e-10
tr|A7XDZ9|A7XDZ9_9ERIC Dehydration-induced protein (Fragment) OS...    69   3e-10
tr|A9PA47|A9PA47_POPTR Putative uncharacterized protein OS=Popul...    67   1e-09
tr|Q6ELF8|Q6ELF8_CUCSA Poly(A)-binding protein C-terminal intera...    66   2e-09
tr|A5BUQ0|A5BUQ0_VITVI Putative uncharacterized protein (Chromos...    66   2e-09
tr|B6SL93|B6SL93_MAIZE Early response to dehydration 15-like pro...    64   6e-09
tr|B7FH52|B7FH52_MEDTR Putative uncharacterized protein OS=Medic...    64   8e-09
tr|Q2HRG8|Q2HRG8_MEDTR Putative uncharacterized protein OS=Medic...    64   1e-08
tr|B6T6B4|B6T6B4_MAIZE Early response to dehydration 15-like pro...    63   2e-08
tr|B6SIV0|B6SIV0_MAIZE Early response to dehydration 15-like pro...    63   2e-08
tr|A9PJP9|A9PJP9_POPJC Putative uncharacterized protein OS=Popul...    63   2e-08
tr|A9P8V9|A9P8V9_POPTR Putative uncharacterized protein OS=Popul...    63   2e-08
tr|A8IXT3|A8IXT3_BRACM ERD15 protein OS=Brassica campestris PE=2...    62   2e-08
tr|Q45W74|Q45W74_ARAHY Putative uncharacterized protein OS=Arach...    61   7e-08
tr|Q7XXS2|Q7XXS2_ORYSJ Os03g0353400 protein OS=Oryza sativa subs...    60   2e-07
tr|Q10LE5|Q10LE5_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    60   2e-07
tr|Q10LE3|Q10LE3_ORYSJ cDNA clone:J013158E09, full insert sequen...    60   2e-07
tr|B6T027|B6T027_MAIZE Early response to dehydration 15-like pro...    60   2e-07
tr|B4FGB3|B4FGB3_MAIZE Early response to dehydration 15-like pro...    60   2e-07
tr|A2XGR1|A2XGR1_ORYSI Putative uncharacterized protein OS=Oryza...    60   2e-07

>tr|Q6ELF9|Q6ELF9_CUCSA Poly(A)-binding protein C-terminal
           interacting protein 6 OS=Cucumis sativus PE=2 SV=1
          Length = 141

 Score = 82.8 bits (203), Expect = 2e-14
 Identities = 38/57 (66%), Positives = 45/57 (78%), Gaps = 1/57 (1%)
 Frame = +1

Query: 22  STSSSFRLNPNAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAERF-DPEMQLA 189
           S+SS   LNPNAP FVP AY TVEDFS +WW L+Q+SP FREYWL ERF DP+ +L+
Sbjct: 9   SSSSVSMLNPNAPLFVPMAYRTVEDFSDQWWELIQSSPWFREYWLQERFQDPQNELS 65


>tr|A9NXH7|A9NXH7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 141

 Score = 77.0 bits (188), Expect = 9e-13
 Identities = 36/53 (67%), Positives = 41/53 (77%)
 Frame = +1

Query: 7   MALCASTSSSFRLNPNAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAER 165
           MAL +   SS  LNPNAP F+PAA+  VEDFS EWWNLVQ+SP FR+YWL ER
Sbjct: 1   MALASRIGSS--LNPNAPLFIPAAFHQVEDFSPEWWNLVQSSPWFRDYWLRER 51


>tr|Q5MEE7|Q5MEE7_PSEMZ Early response to dehydration 15-like
           protein (Fragment) OS=Pseudotsuga menziesii var.
           menziesii PE=4 SV=1
          Length = 134

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 34/55 (61%), Positives = 42/55 (76%)
 Frame = +1

Query: 7   MALCASTSSSFRLNPNAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAERFD 171
           MA+ +  SS+  LNPNAP F+P AY  VEDFS EWWNLVQ+SP FR+YWL E ++
Sbjct: 1   MAVTSRVSST--LNPNAPLFIPLAYRQVEDFSPEWWNLVQSSPWFRDYWLRESYE 53


>tr|Q5MEE1|Q5MEE1_PSEMZ Early response to dehydration 15-like
           protein (Fragment) OS=Pseudotsuga menziesii var.
           menziesii PE=4 SV=1
          Length = 134

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 34/55 (61%), Positives = 42/55 (76%)
 Frame = +1

Query: 7   MALCASTSSSFRLNPNAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAERFD 171
           MA+ +  SS+  LNPNAP F+P AY  VEDFS EWWNLVQ+SP FR+YWL E ++
Sbjct: 1   MAVTSRVSST--LNPNAPLFIPLAYRQVEDFSPEWWNLVQSSPWFRDYWLRESYE 53


>tr|Q5MED0|Q5MED0_PSEMZ Early response to dehydration 15-like
           protein (Fragment) OS=Pseudotsuga menziesii var.
           menziesii PE=4 SV=1
          Length = 134

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 34/55 (61%), Positives = 42/55 (76%)
 Frame = +1

Query: 7   MALCASTSSSFRLNPNAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAERFD 171
           MA+ +  SS+  LNPNAP F+P AY  VEDFS EWWNLVQ+SP FR+YWL E ++
Sbjct: 1   MAVTSRVSST--LNPNAPLFIPLAYRQVEDFSPEWWNLVQSSPWFRDYWLRESYE 53


>tr|A9NPN1|A9NPN1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 122

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 31/53 (58%), Positives = 39/53 (73%)
 Frame = +1

Query: 13  LCASTSSSFRLNPNAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAERFD 171
           +  ++  S  LNPNAP F+P AY  VEDFS EWWNLVQ+SP FR+YWL E ++
Sbjct: 1   MAVTSRGSSTLNPNAPLFIPLAYQQVEDFSPEWWNLVQSSPWFRDYWLRESYE 53


>tr|A9NNL5|A9NNL5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 160

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 31/53 (58%), Positives = 39/53 (73%)
 Frame = +1

Query: 13  LCASTSSSFRLNPNAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAERFD 171
           +  ++  S  LNPNAP F+P AY  VEDFS EWWNLVQ+SP FR+YWL E ++
Sbjct: 1   MAVTSRGSSTLNPNAPLFIPLAYQQVEDFSPEWWNLVQSSPWFRDYWLRESYE 53


>tr|Q9LKW3|Q9LKW3_SOLLC Dehydration-induced protein ERD15 OS=Solanum
           lycopersicum PE=2 SV=1
          Length = 156

 Score = 70.9 bits (172), Expect = 7e-11
 Identities = 51/160 (31%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
 Frame = +1

Query: 7   MALCASTSSSFRLNPNAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAERFDPEMQL 186
           MAL +   S+  LNPNAP FVP+    VEDFS EWWNLV TS  F +YW+++    E   
Sbjct: 1   MALVSGGRST--LNPNAPLFVPSFVRQVEDFSPEWWNLVTTSTWFHDYWMSQNQGEEYGA 58

Query: 187 ASEF-XXXXXXXXXSAEEDYLPASSMDLKEFARLSGWKEEGPPMKL-------------- 321
            ++           + +ED L   +   +EF + S  +++G    L              
Sbjct: 59  GNDVADLLPENIDLNVDEDILNMEA-QFEEFLQSSENEQQGIKSSLYGVNAMPQYGLPSD 117

Query: 322 --------GRRPFSPLPYLDKPLKVSQPQKPGMRKIHQPR 417
                    R P  P  Y +KP K+  P+    R I QPR
Sbjct: 118 ALIRTLSSPRSPIGPPKYFEKPSKIVSPRN-SFRSIQQPR 156


>tr|A9T8Q4|A9T8Q4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168679 PE=4 SV=1
          Length = 160

 Score = 70.9 bits (172), Expect = 7e-11
 Identities = 31/51 (60%), Positives = 35/51 (68%)
 Frame = +1

Query: 13  LCASTSSSFRLNPNAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAER 165
           +    +S   LNPNAP FVPAA+  VEDFS EWW LVQT P FRE W+ ER
Sbjct: 1   MATKINSVSTLNPNAPLFVPAAFRAVEDFSSEWWRLVQTCPDFREQWVRER 51


>tr|A9TZJ9|A9TZJ9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_172857 PE=4 SV=1
          Length = 248

 Score = 70.5 bits (171), Expect = 9e-11
 Identities = 30/41 (73%), Positives = 33/41 (80%)
 Frame = +1

Query: 43  LNPNAPFFVPAAYSTVEDFSGEWWNLVQTSPAFREYWLAER 165
           LNPNAP FVPAA+  VEDFS EWW+LVQT P FRE W+ ER
Sbjct: 11  LNPNAPLFVPAAFRIVEDFSNEWWSLVQTCPDFREQWVRER 51