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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948303
Clone id TST38A01NGRL0002_P10
Library
Length 682
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0002_P10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGTGGTGCTCTCAAATATGGCCGCTCTACATCTTCCTGTTGCCTATCATCCTCACGAGAG
TTGCTCAGCTAGGCCTCGCTTACGAGAGGACAATCTGCAGAAACCGTCCAGGTTAGCTCC
TTCGCTGGATACTTACACTCACAGAGAGGAGAAATTCGTCCTTGGAAGAGGTTTAGGTAC
TGTCTGCCATGCAAAGAAGGAGCACAGAGAGAGAAGGGACCCTTTCGGACAAGACCCCTC
TCTCAGACTCAATGAAGAAATGCACGGCTTTGGGCAAAATGCTGGAAGTGGGTGCTCATC
TCTGTGTAGTGATAGCGGGTCTTCTGGGTCTGAGCAACGTAATGTTATGGTTTACTATCG
CAACAGGAAGAAAGCGTGGCTTGATCCTTTTAACTTCGGGGATTTACCCGGGTTTTTTGC
CGGTGCAGAATTTGCTGAAGAGGGTCTTCAAGACCCAGAGCCCCTAAGTTTTCCCGTGGA
TCCCAACAGCGAATATGGATTTCTTGATTTTCCTAAGCAATATAATGTGGAGATGGCATC
CCTTCCCCTTCTTGCAAGAGGCGATGTCCGCAAATGCTGCTGCATCGTTGCCGGTGGCGT
CTATGAGAACCTTCTGTTTTTTCCTGTAATTCAGATGCTTAAAGAGAGATATCCAGGGGG
TTGAAATCGATATGATTGCGTC
■■Homology search results ■■ -
sp_hit_id Q9EP79
Definition sp|Q9EP79|VN1A7_MOUSE Vomeronasal type-1 receptor A7 OS=Mus musculus
Align length 95
Score (bit) 30.4
E-value 9.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948303|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_P10, 5'
         (682 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9EP79|VN1A7_MOUSE Vomeronasal type-1 receptor A7 OS=Mus musc...    30   9.1  
sp|A9KM95|RLMN2_CLOPH Ribosomal RNA large subunit methyltransfer...    30   9.1  

>sp|Q9EP79|VN1A7_MOUSE Vomeronasal type-1 receptor A7 OS=Mus
           musculus GN=V1ra7 PE=2 SV=1
          Length = 309

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 22/95 (23%), Positives = 43/95 (45%)
 Frame = +3

Query: 306 VVIAGLLGLSNVMLWFTIATGRKRGLILLTSGIYPGFLPVQNLLKRVFKTQSP*VFPWIP 485
           V + GL+GLS   +   +   + R   L  S + P   P Q  L+ +    S     ++ 
Sbjct: 194 VFVIGLMGLSTCYMATLLCRHKTRSQRLQNSKLSPKATPEQRALRTILMLMS----FFLL 249

Query: 486 TANMDFLIFLSNIMWRWHPFPFLQEAMSANAAASL 590
            +  D +I  S  + + +P PF  + + A++ A++
Sbjct: 250 MSTFDSIISYSRTILQGNPLPFCFQILVAHSYAAV 284


>sp|A9KM95|RLMN2_CLOPH Ribosomal RNA large subunit methyltransferase
           N 2 OS=Clostridium phytofermentans (strain ATCC 700394 /
           DSM 18823 / ISDg) GN=rlmN2 PE=3 SV=1
          Length = 356

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -1

Query: 607 LIDATGNDAAAFADIASCKKGKGCHLHIILLRKIKK 500
           L+D   + AA   +++   KGK CH+++I +  IK+
Sbjct: 264 LVDGVNDTAACAKELSRLLKGKNCHVNLIPVNPIKE 299
tr_hit_id Q9S9N6
Definition tr|Q9S9N6|Q9S9N6_ARATH T24D18.8 protein (At1g15980/T24D18_8) (Putative uncharacterized protein) OS=Arabidopsis thaliana
Align length 107
Score (bit) 116.0
E-value 1.0e-24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948303|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0002_P10, 5'
         (682 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9S9N6|Q9S9N6_ARATH T24D18.8 protein (At1g15980/T24D18_8) (Pu...   116   1e-24
tr|B6SP99|B6SP99_MAIZE Putative uncharacterized protein OS=Zea m...   108   2e-22
tr|A7QG07|A7QG07_VITVI Chromosome chr9 scaffold_90, whole genome...   101   4e-20
tr|Q6ZG03|Q6ZG03_ORYSJ Os08g0276100 protein OS=Oryza sativa subs...    98   4e-19
tr|B8B8Z9|B8B8Z9_ORYSI Putative uncharacterized protein OS=Oryza...    98   4e-19
tr|A9SL24|A9SL24_PHYPA Predicted protein OS=Physcomitrella paten...    97   7e-19
tr|A9SCR2|A9SCR2_PHYPA Predicted protein OS=Physcomitrella paten...    97   1e-18
tr|B6VKQ0|B6VKQ0_9ENTR Putative transcriptional regulator, sorc ...    34   9.8  
tr|Q2KCX4|Q2KCX4_RHIEC Probable sugar ABC transporter, ATP-bindi...    34   9.9  
tr|B5ZNU2|B5ZNU2_RHILW ABC transporter related OS=Rhizobium legu...    34   9.9  
tr|B3Q0C3|B3Q0C3_RHIE6 Probable sugar ABC transporter, ATP-bindi...    34   9.9  
tr|B1XQJ6|B1XQJ6_SYNP2 Heptosyltransferase family protein OS=Syn...    34   9.9  
tr|Q4DYK8|Q4DYK8_TRYCR Putative uncharacterized protein OS=Trypa...    34   9.9  
tr|Q4DCD0|Q4DCD0_TRYCR Putative uncharacterized protein OS=Trypa...    34   9.9  

>tr|Q9S9N6|Q9S9N6_ARATH T24D18.8 protein (At1g15980/T24D18_8)
           (Putative uncharacterized protein) OS=Arabidopsis
           thaliana GN=At1g15980 PE=2 SV=1
          Length = 461

 Score =  116 bits (291), Expect = 1e-24
 Identities = 55/107 (51%), Positives = 72/107 (67%), Gaps = 1/107 (0%)
 Frame = +2

Query: 341 NVMVYYRNRKKAWLDPFNFGDLPXXXXXXXXXXXXL-QDPEPLSFPVDPNSEYGFLDFPK 517
           +V V  + +   WLDPF+ G+ P              +DP P   P +P++ YGFL FPK
Sbjct: 42  DVSVNLKKKNNPWLDPFDSGEDPDNEYGSLFADGKQDEDPRP---PDNPDNPYGFLKFPK 98

Query: 518 QYNVEMASLPLLARGDVRKCCCIVAGGVYENLLFFPVIQMLKERYPG 658
            Y VE+ASLPL  RGDVR+CCC+++GGVYENLLFFP IQ++K+RYPG
Sbjct: 99  GYTVELASLPLKIRGDVRRCCCVISGGVYENLLFFPTIQLIKDRYPG 145


>tr|B6SP99|B6SP99_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 466

 Score =  108 bits (271), Expect = 2e-22
 Identities = 54/109 (49%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
 Frame = +2

Query: 335 QRNVMVYYRNRKKAWLDPFNFG-DLPXXXXXXXXXXXXLQDPEPLSFPVDPNSEYGFLDF 511
           +R+V  +   +K  WLDPF+ G D               +DP P   P DP + YGFL F
Sbjct: 37  RRSVAAWSAKKKNPWLDPFDDGPDEEFDYQGMFSGGKQEEDPRP---PEDPENPYGFLRF 93

Query: 512 PKQYNVEMASLPLLARGDVRKCCCIVAGGVYENLLFFPVIQMLKERYPG 658
           P+ YN E+ SL    RGDVR+ CC+V+GGVYEN+LFFPV+QMLK+RYPG
Sbjct: 94  PQGYNPELDSLASKVRGDVRRACCVVSGGVYENVLFFPVVQMLKDRYPG 142


>tr|A7QG07|A7QG07_VITVI Chromosome chr9 scaffold_90, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037644001
           PE=4 SV=1
          Length = 395

 Score =  101 bits (252), Expect = 4e-20
 Identities = 44/70 (62%), Positives = 57/70 (81%)
 Frame = +2

Query: 449 QDPEPLSFPVDPNSEYGFLDFPKQYNVEMASLPLLARGDVRKCCCIVAGGVYENLLFFPV 628
           +DP P   P +P++ YGFL FP  Y+VE+ASL L  RGDVR+CCC+++GGVYENLLFFP 
Sbjct: 14  EDPRP---PDNPDNPYGFLKFPMGYSVEIASLALKVRGDVRRCCCVISGGVYENLLFFPA 70

Query: 629 IQMLKERYPG 658
           IQ++K+RYPG
Sbjct: 71  IQLIKDRYPG 80


>tr|Q6ZG03|Q6ZG03_ORYSJ Os08g0276100 protein OS=Oryza sativa subsp.
           japonica GN=OJ1118_F05.12 PE=2 SV=1
          Length = 469

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 49/99 (49%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
 Frame = +2

Query: 365 RKKAWLDPFNFG-DLPXXXXXXXXXXXXLQDPEPLSFPVDPNSEYGFLDFPKQYNVEMAS 541
           +K  WLDPF+ G D               +DP P   P DP + YGFL FP  YN E+ S
Sbjct: 50  KKNPWLDPFDDGPDDEFDYRGAFSGGKQEEDPRP---PEDPANPYGFLRFPAGYNPELDS 106

Query: 542 LPLLARGDVRKCCCIVAGGVYENLLFFPVIQMLKERYPG 658
           L    R DVR+ CC+V+GGVYEN+LFFPV+Q+L++RYPG
Sbjct: 107 LASKVRRDVRRACCVVSGGVYENVLFFPVVQLLRDRYPG 145


>tr|B8B8Z9|B8B8Z9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_28562 PE=4 SV=1
          Length = 462

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 49/99 (49%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
 Frame = +2

Query: 365 RKKAWLDPFNFG-DLPXXXXXXXXXXXXLQDPEPLSFPVDPNSEYGFLDFPKQYNVEMAS 541
           +K  WLDPF+ G D               +DP P   P DP + YGFL FP  YN E+ S
Sbjct: 45  KKNPWLDPFDDGPDDEFDYRGAFSGGKQEEDPRP---PEDPANPYGFLRFPAGYNPELDS 101

Query: 542 LPLLARGDVRKCCCIVAGGVYENLLFFPVIQMLKERYPG 658
           L    R DVR+ CC+V+GGVYEN+LFFPV+Q+L++RYPG
Sbjct: 102 LASKVRRDVRRACCVVSGGVYENVLFFPVVQLLRDRYPG 140


>tr|A9SL24|A9SL24_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_233534 PE=4 SV=1
          Length = 473

 Score = 97.4 bits (241), Expect = 7e-19
 Identities = 51/99 (51%), Positives = 62/99 (62%), Gaps = 1/99 (1%)
 Frame = +2

Query: 365 RKKAWLD-PFNFGDLPXXXXXXXXXXXXLQDPEPLSFPVDPNSEYGFLDFPKQYNVEMAS 541
           +KK W D PF++G                Q+ E      DP+SE G+LDFP  +  E+AS
Sbjct: 60  KKKGWFDDPFDYGADEEEDTMGELMSQGPQEAEDPRPSRDPDSESGYLDFPAGFMPEVAS 119

Query: 542 LPLLARGDVRKCCCIVAGGVYENLLFFPVIQMLKERYPG 658
           L  L R DVR+C C+V+GGVYENLLFFPVIQMLK RYPG
Sbjct: 120 LGTLIRNDVRRCLCMVSGGVYENLLFFPVIQMLKNRYPG 158


>tr|A9SCR2|A9SCR2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_106212 PE=4 SV=1
          Length = 475

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 50/101 (49%), Positives = 64/101 (63%), Gaps = 4/101 (3%)
 Frame = +2

Query: 368 KKAWLD-PFNFG---DLPXXXXXXXXXXXXLQDPEPLSFPVDPNSEYGFLDFPKQYNVEM 535
           KK W D PF++G   +               +DP P     DP+SE G+LDFP  +  E+
Sbjct: 63  KKGWFDDPFDYGADDEEDTMGELMSQGPQGAEDPRPAR---DPDSESGYLDFPAGFMPEV 119

Query: 536 ASLPLLARGDVRKCCCIVAGGVYENLLFFPVIQMLKERYPG 658
           ASL +L R DVR+C C+++GGVYENLLFFPVIQ+LK RYPG
Sbjct: 120 ASLGILIRNDVRRCLCMISGGVYENLLFFPVIQLLKNRYPG 160


>tr|B6VKQ0|B6VKQ0_9ENTR Putative transcriptional regulator, sorc
           family (Putative sorc-typ transcriptional regulator)
           OS=Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949 GN=lsrR PE=4 SV=1
          Length = 335

 Score = 33.9 bits (76), Expect = 9.8
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
 Frame = +3

Query: 192 QRRSTEREGTLSDKTPLSDSMKKCTALGKMLEVGAHLCVV---IAGLLGLSNVMLWFTIA 362
           + +S + +  LS+ T L +SM +   L ++     H  +    I  LLGLS + +   + 
Sbjct: 9   KEKSVKEKQMLSEDTYLGNSMSEEELLARIAWFYYHDGLTQGDIGDLLGLSRLKVSRLLE 68

Query: 363 TGRKRGLI-LLTSGIYPGFLPVQNLLKRVFKTQSP*VFPWIPTANM 497
            GR+ G+I +  +  Y G L ++N L++ F  +   V P +   N+
Sbjct: 69  KGRQSGVIRVQINSRYEGCLALENTLQKHFSLKQVRVLPALADMNL 114


>tr|Q2KCX4|Q2KCX4_RHIEC Probable sugar ABC transporter, ATP-binding
           protein OS=Rhizobium etli (strain CFN 42 / ATCC 51251)
           GN=RHE_CH00491 PE=3 SV=1
          Length = 517

 Score = 33.9 bits (76), Expect = 9.9
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 29  HLPVAYHPHESCSARPRLREDNLQKPSRLAPSLDTYTHREEKFVLGRGL 175
           H PV  H  ES +A  ++R+ +++ PSR  P+       ++K V+G+ L
Sbjct: 385 HGPVINHARESANADRQIRDLSIKTPSRRVPASSMSGGNQQKIVIGKWL 433


>tr|B5ZNU2|B5ZNU2_RHILW ABC transporter related OS=Rhizobium
           leguminosarum bv. trifolii (strain WSM2304)
           GN=Rleg2_0150 PE=4 SV=1
          Length = 517

 Score = 33.9 bits (76), Expect = 9.9
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +2

Query: 29  HLPVAYHPHESCSARPRLREDNLQKPSRLAPSLDTYTHREEKFVLGRGL 175
           H PV  H  ES +A  ++R+ +++ PSR  P+       ++K V+G+ L
Sbjct: 385 HGPVINHARESANADRQIRDLSIKTPSRRVPASSMSGGNQQKIVIGKWL 433