DK948326 |
Clone id |
TST38A01NGRL0003_A09 |
Library |
TST38 |
Length |
683 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_A09. 5' end sequence. |
Accession |
DK948326 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL428Contig1 |
Sequence |
AGCATATGGGCTAAGGCCACACGACAAAATTAGTGTTGGTTATGTGAATGATCCGAATGA GGAACGGGATGAAGCAGCCATGCAACTCTCTTCTGCAAGACCCTAGCGTGGACGCAGTCG CAGAAACTTGAAGCCTCAGCAGCGAAAGCTAAGTAGTCTTATCTCTTGAAGCTTACAAGG AACAGGAGCTCGGAATGGCGCTCCGCAACTCGACCACAGACACTCCTTCACTGGCAGCCT CTGGGTTTGGAAAACTCTTCAGCATGTGCAGAGCTAGAAAAGAGTTACAGGTTCAGCTCT GGGGCCACATTATGCATCCAAGAAGGTTCTGCAGCTCATCATTTCCTTTATCGACTAGGA GACGCAAGCTTTCAGCTCCGTCTTCAAGCCTCCATGATGGCAACTCTGACAATGGAAGGT CCAAAAGTGTTGACACTGAGGCATTTTGCATAATTGAGGGCCCGGAAACTGTGAGCGATT TTGCTCGATTGCAGTTGCAAGAAATACAAGACAATATAAGGAGTCGCAGGAATGCCATCT TTCTTCTTCTGGAAGAGGTTCGCAGGCTGCGTATCCNACAGAAGCTTAAAAGCATAGAGC AAAGTCCTGATGAAGATGAAAGCGAGATGCCCGAGTTCAAGTCGTTTATCCCGTTTCTCC CTCCTTTGACATCAAAAACGTTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9VW47 |
Definition |
sp|Q9VW47|MED12_DROME Mediator of RNA polymerase II transcription subunit 12 OS=Drosophila melanogaster |
Align length |
107 |
Score (bit) |
32.7 |
E-value |
1.8 |
Report |
 |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PBM8 |
Definition |
tr|A7PBM8|A7PBM8_VITVI Chromosome chr16 scaffold_10, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
100 |
Score (bit) |
94.4 |
E-value |
6.0e-18 |
Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948326|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0003_A09, 5' (666 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PBM8|A7PBM8_VITVI Chromosome chr16 scaffold_10, whole genom... 94 6e-18 tr|B6SZF9|B6SZF9_MAIZE Putative uncharacterized protein OS=Zea m... 94 8e-18 tr|Q9FKF4|Q9FKF4_ARATH Genomic DNA, chromosome 5, TAC clone:K11J... 94 1e-17 tr|A2T1U1|A2T1U1_BRAOB OR OS=Brassica oleracea var. botrytis GN=... 94 1e-17 tr|Q6H3Y3|Q6H3Y3_ORYSJ Os02g0651300 protein OS=Oryza sativa subs... 93 1e-17 tr|B8AG21|B8AG21_ORYSI Putative uncharacterized protein OS=Oryza... 93 1e-17 tr|A9NXS0|A9NXS0_PICSI Putative uncharacterized protein OS=Picea... 91 6e-17 tr|A7PBN8|A7PBN8_VITVI Chromosome chr16 scaffold_10, whole genom... 91 6e-17 tr|A5C9Z4|A5C9Z4_VITVI Putative uncharacterized protein OS=Vitis... 86 2e-15 tr|A2T1U3|A2T1U3_BRAOB OR-Ins OS=Brassica oleracea var. botrytis... 86 2e-15 tr|A3A9N5|A3A9N5_ORYSJ Putative uncharacterized protein OS=Oryza... 82 2e-14 tr|Q8VYD8|Q8VYD8_ARATH Putative uncharacterized protein At5g0613... 82 4e-14 tr|Q6EPX0|Q6EPX0_ORYSJ Os02g0535000 protein OS=Oryza sativa subs... 81 5e-14 tr|B8AJ23|B8AJ23_ORYSI Putative uncharacterized protein OS=Oryza... 81 5e-14 tr|A7PPA7|A7PPA7_VITVI Chromosome chr8 scaffold_23, whole genome... 81 7e-14 tr|A5C2R3|A5C2R3_VITVI Putative uncharacterized protein OS=Vitis... 81 7e-14 tr|Q9LHS3|Q9LHS3_ARATH Genomic DNA, chromosome 5, TAC clone:K16F... 80 1e-13 tr|A8J1Y5|A8J1Y5_CHLRE Predicted protein OS=Chlamydomonas reinha... 77 1e-12 tr|B6T3W0|B6T3W0_MAIZE Putative uncharacterized protein OS=Zea m... 75 4e-12 tr|B4FS30|B4FS30_MAIZE Putative uncharacterized protein OS=Zea m... 75 4e-12 tr|A2T1U4|A2T1U4_BRAOB OR-Del OS=Brassica oleracea var. botrytis... 74 8e-12 tr|A2T1U2|A2T1U2_BRAOB OR-LDel OS=Brassica oleracea var. botryti... 74 8e-12 tr|A9TZ44|A9TZ44_PHYPA Predicted protein OS=Physcomitrella paten... 62 4e-08 tr|Q3E7F5|Q3E7F5_ARATH Uncharacterized protein At5g06130.1 OS=Ar... 57 1e-06 tr|A4S9B1|A4S9B1_OSTLU Predicted protein OS=Ostreococcus lucimar... 55 3e-06 tr|Q00T96|Q00T96_OSTTA Homology to unknown gene OS=Ostreococcus ... 53 2e-05 tr|A9TID9|A9TID9_PHYPA Predicted protein OS=Physcomitrella paten... 47 8e-04 tr|B0ND06|B0ND06_EUBSP Putative uncharacterized protein OS=Clost... 38 0.65
>tr|A7PBM8|A7PBM8_VITVI Chromosome chr16 scaffold_10, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00014167001 PE=4 SV=1 Length = 270
Score = 94.4 bits (233), Expect = 6e-18 Identities = 52/100 (52%), Positives = 63/100 (63%), Gaps = 2/100 (2%) Frame = +3
Query: 372 SAPSSSLHDGNSDNGRSKSVDTEAFCIIEGPETVSDFARLQLQEIQDNIRSRRNAIFXXX 551 S P +S + D+ S T FCIIEGPETV DFA+++LQEIQDNIRSRRN IF Sbjct: 3 SEPEASSFASSVDSDSSDKNST-GFCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHM 61
Query: 552 XXXXXXXIXQKLKSIEQS--PDEDESEMPEFKSFIPFLPP 665 I Q++KS E +E E+E+P F SFIPFLPP Sbjct: 62 EEVRRLRIQQRIKSAELGILKEEQENELPNFPSFIPFLPP 101
>tr|B6SZF9|B6SZF9_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 321
Score = 94.0 bits (232), Expect = 8e-18 Identities = 52/100 (52%), Positives = 64/100 (64%), Gaps = 4/100 (4%) Frame = +3
Query: 378 PSSSLHDGNSDNGRS--KSVDTEAFCIIEGPETVSDFARLQLQEIQDNIRSRRNAIFXXX 551 PSSS N G ++ + FCIIEGPETV DFA+L LQEIQDNIRSRRN IF Sbjct: 53 PSSSSSPPNPPFGAGDDQTAASPGFCIIEGPETVQDFAKLDLQEIQDNIRSRRNKIFLHM 112
Query: 552 XXXXXXXIXQKLKSIEQ--SPDEDESEMPEFKSFIPFLPP 665 I Q++K++E S +E + E+P+F SFIPFLPP Sbjct: 113 EEIRRLRIQQRIKNVELGISDEERDHELPDFPSFIPFLPP 152
>tr|Q9FKF4|Q9FKF4_ARATH Genomic DNA, chromosome 5, TAC clone:K11J9 (At5g61670/k11j9_190) (Putative uncharacterized protein At5g61670) (Putative uncharacterized protein) OS=Arabidopsis thaliana GN=At5g61670 PE=2 SV=1 Length = 307
Score = 93.6 bits (231), Expect = 1e-17 Identities = 57/117 (48%), Positives = 70/117 (59%), Gaps = 7/117 (5%) Frame = +3
Query: 336 SSFPLST---RRRKLSAPSSSLHDGNSDNGRSKSVDTEA--FCIIEGPETVSDFARLQLQ 500 S + LS+ R R+L ++L +S S D A FCIIEGPETV DFA++QLQ Sbjct: 22 SQYKLSSSLGRNRRLRWRFTALDPESSSLDSESSADKFASGFCIIEGPETVQDFAKMQLQ 81
Query: 501 EIQDNIRSRRNAIFXXXXXXXXXXIXQKLKSIEQS--PDEDESEMPEFKSFIPFLPP 665 EIQDNIRSRRN IF I Q++K+ E +E E E+P F SFIPFLPP Sbjct: 82 EIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNTELGIINEEQEHELPNFPSFIPFLPP 138
>tr|A2T1U1|A2T1U1_BRAOB OR OS=Brassica oleracea var. botrytis GN=Or PE=2 SV=1 Length = 305
Score = 93.6 bits (231), Expect = 1e-17 Identities = 54/108 (50%), Positives = 65/108 (60%), Gaps = 2/108 (1%) Frame = +3
Query: 348 LSTRRRKLSAPSSSLHDGNSDNGRSKSVDTEAFCIIEGPETVSDFARLQLQEIQDNIRSR 527 L R L + SSSL +SD + FCIIEGPETV DFA++QLQEIQDNIRSR Sbjct: 35 LRWRFTALDSDSSSLDSDSSDKFAA------GFCIIEGPETVQDFAKMQLQEIQDNIRSR 88
Query: 528 RNAIFXXXXXXXXXXIXQKLKSIEQS--PDEDESEMPEFKSFIPFLPP 665 RN IF I Q++++ E +E E E+P F SFIPFLPP Sbjct: 89 RNKIFLHMEEVRRLRIQQRIRNTELGIIDEEQEHELPNFPSFIPFLPP 136
>tr|Q6H3Y3|Q6H3Y3_ORYSJ Os02g0651300 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0012J10.22 PE=2 SV=1 Length = 332
Score = 93.2 bits (230), Expect = 1e-17 Identities = 49/100 (49%), Positives = 63/100 (63%), Gaps = 2/100 (2%) Frame = +3
Query: 372 SAPSSSLHDGNSDNGRSKSVDTEAFCIIEGPETVSDFARLQLQEIQDNIRSRRNAIFXXX 551 S+P + + +G ++ + FCIIEGPETV DF +L LQEIQDNIRSRRN IF Sbjct: 64 SSPPPTPAAASFGSGDEQAAGSPGFCIIEGPETVQDFEKLDLQEIQDNIRSRRNKIFLHM 123
Query: 552 XXXXXXXIXQKLKSIEQ--SPDEDESEMPEFKSFIPFLPP 665 I Q++K++E S D E E+P+F SFIPFLPP Sbjct: 124 EEIRRLRIQQRIKNVELGISVDVPEGELPDFPSFIPFLPP 163
>tr|B8AG21|B8AG21_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_08297 PE=4 SV=1 Length = 332
Score = 93.2 bits (230), Expect = 1e-17 Identities = 49/100 (49%), Positives = 63/100 (63%), Gaps = 2/100 (2%) Frame = +3
Query: 372 SAPSSSLHDGNSDNGRSKSVDTEAFCIIEGPETVSDFARLQLQEIQDNIRSRRNAIFXXX 551 S+P + + +G ++ + FCIIEGPETV DF +L LQEIQDNIRSRRN IF Sbjct: 64 SSPPPTPAAASFGSGDEQAAGSPGFCIIEGPETVQDFEKLDLQEIQDNIRSRRNKIFLHM 123
Query: 552 XXXXXXXIXQKLKSIEQ--SPDEDESEMPEFKSFIPFLPP 665 I Q++K++E S D E E+P+F SFIPFLPP Sbjct: 124 EEIRRLRIQQRIKNVELGISVDVPEGELPDFPSFIPFLPP 163
>tr|A9NXS0|A9NXS0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 349
Score = 90.9 bits (224), Expect = 6e-17 Identities = 45/95 (47%), Positives = 60/95 (63%), Gaps = 2/95 (2%) Frame = +3
Query: 384 SSLHDGNSDNGRSKSVDTEAFCIIEGPETVSDFARLQLQEIQDNIRSRRNAIFXXXXXXX 563 +S G + + T +FCIIEGPE + DFA++QLQEIQDN+RSRRN IF Sbjct: 70 TSSSGGEKNPNEQDELGTSSFCIIEGPEMIQDFAKMQLQEIQDNVRSRRNKIFLLMEEVR 129
Query: 564 XXXIXQKLKSIEQS--PDEDESEMPEFKSFIPFLP 662 + Q++KS + DEDE+EMP+ +S IPFLP Sbjct: 130 RLRVQQRIKSADMRNVNDEDENEMPDIQSSIPFLP 164
>tr|A7PBN8|A7PBN8_VITVI Chromosome chr16 scaffold_10, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00014180001 PE=4 SV=1 Length = 307
Score = 90.9 bits (224), Expect = 6e-17 Identities = 51/103 (49%), Positives = 64/103 (62%), Gaps = 1/103 (0%) Frame = +3
Query: 360 RRKLSAPSSSLHDGNSDNGRSKSVDTEAFCIIEGPETVSDFARLQLQEIQDNIRSRRNAI 539 R +S P +S + D+ + DT FCIIEGPETV DFA+++LQEIQDNIRSRRN I Sbjct: 37 RAMVSGPEASAFAPSVDSESADKNDT-GFCIIEGPETVQDFAKMELQEIQDNIRSRRNKI 95
Query: 540 FXXXXXXXXXXIXQKLKSIEQS-PDEDESEMPEFKSFIPFLPP 665 F I Q++K+ E E E+E+ F SFIPFLPP Sbjct: 96 FLHMEEVRRLRIQQRIKNAELGILKEQENELQNFPSFIPFLPP 138
>tr|A5C9Z4|A5C9Z4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027721 PE=4 SV=1 Length = 248
Score = 85.9 bits (211), Expect = 2e-15 Identities = 44/75 (58%), Positives = 52/75 (69%), Gaps = 1/75 (1%) Frame = +3
Query: 444 FCIIEGPETVSDFARLQLQEIQDNIRSRRNAIFXXXXXXXXXXIXQKLKSIEQS-PDEDE 620 FCIIEGPETV DFA+++LQEIQDNIRSRRN IF I Q++K+ E E E Sbjct: 5 FCIIEGPETVQDFAKMELQEIQDNIRSRRNKIFLHMEEVRRLRIQQRIKNAELGILKEQE 64
Query: 621 SEMPEFKSFIPFLPP 665 +E+ F SFIPFLPP Sbjct: 65 NELQNFPSFIPFLPP 79
>tr|A2T1U3|A2T1U3_BRAOB OR-Ins OS=Brassica oleracea var. botrytis GN=Or PE=2 SV=1 Length = 318
Score = 85.9 bits (211), Expect = 2e-15 Identities = 53/121 (43%), Positives = 65/121 (53%), Gaps = 15/121 (12%) Frame = +3
Query: 348 LSTRRRKLSAPSSSLHDGNSDNGRSKSVDTEAFCIIEGPETVSDFARLQLQEIQDNIRSR 527 L R L + SSSL +SD + FCIIEGPETV DFA++QLQEIQDNIRSR Sbjct: 35 LRWRFTALDSDSSSLDSDSSDKFAA------GFCIIEGPETVQDFAKMQLQEIQDNIRSR 88
Query: 528 RNAIFXXXXXXXXXXIXQKLKSIEQSPDEDES---------------EMPEFKSFIPFLP 662 RN IF I Q++++ E ++E E+P F SFIPFLP Sbjct: 89 RNKIFLHMEEVRRLRIQQRIRNTELGIIDEEQEHELKSQNPNLLIQHELPNFPSFIPFLP 148
Query: 663 P 665 P Sbjct: 149 P 149
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