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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948348
Clone id TST38A01NGRL0003_B08
Library
Length 676
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_B08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGCCATCTTTCTGTGTATACTTTTCTCTACCCCCGCCCCCTCCTCCTTGTACAGCACAGA
TTATCGGCCCTCATCATGGCTCTGCTGCAAGCTGCCAACTCCATTTCCTGCACCCACAAG
CTCTCCCTTCCCGTACAACGCCCCGCCCACAGTAGGATTTGCTCTTCTCTCTCTACGCCC
ACCCTCAAGGGAGTGCCTCCTCCCTCTTTAAGGTTCGGATCCTCTTTTTTCAATGGCTCC
AGCCTGCTGAAGGTGAAGAGAGAGATACAAGAGCTGAAGAGCGGCAGCAATTCGAGTAAG
GGGGGAGCTTGCACAGCAACCAGTTCTATCACTCTCTCGGGCGAGTTGCTGCGATGGATC
TTTGCCGGCGCAGCGGCGGTGCTTATGTACCTCAAGAACACATCTATTAACAAGAATATT
CTGGTTCCATTGTTGGCATTGCAAGCTCCACGCGATGTTGTCACAGCGGTCCGGGGTGAA
TATGGACTTTGGGCGGCGTTTCTAGCTCTATTGGTTAGGTTGTTTTACCAACTTCCAGGG
GAGCTCGAGCTACCGCTTGTGCTTGTGTTGCTATTGATCACCGCACCTCTTCAAGTTTTG
GACATCAAAAGGACAACGGCCGCGCTAGTGGTGAGTGCATGTGTGGCAGCATACCTAGTG
TACCAACATGTGAATG
■■Homology search results ■■ -
sp_hit_id Q9QYX3
Definition sp|Q9QYX3|RNAS1_MUSPA Ribonuclease pancreatic OS=Mus pahari
Align length 42
Score (bit) 31.6
E-value 4.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948348|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_B08, 5'
         (676 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9QYX3|RNAS1_MUSPA Ribonuclease pancreatic OS=Mus pahari GN=R...    32   4.0  
sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain O...    30   4.3  
sp|Q8SQ05|RNAS1_LAGLA Ribonuclease pancreatic OS=Lagothrix lagot...    31   6.8  
sp|Q9WUS3|RNAS1_LEOED Ribonuclease pancreatic OS=Leopoldamys edw...    30   8.9  

>sp|Q9QYX3|RNAS1_MUSPA Ribonuclease pancreatic OS=Mus pahari
           GN=Rnase1 PE=2 SV=1
          Length = 149

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 204 LFKVRILFFQWLQPAEGEERDTRAEERQQFE*GGSLHSNQFY 329
           LF + +L   W+QP+ G+E   +  ERQ  +  GS +++  Y
Sbjct: 9   LFPLFVLLLGWVQPSLGKESSAQKFERQHMDSSGSSNNSPTY 50


>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain
            OS=Danio rerio GN=helz PE=2 SV=1
          Length = 1860

 Score = 29.6 bits (65), Expect(2) = 4.3
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +3

Query: 69   PHHGSAASCQLHFLHPQALPSRTTP 143
            PH  SAAS Q H   P  LPS+ TP
Sbjct: 1767 PHPASAASLQHHGQFPPLLPSKQTP 1791



 Score = 20.4 bits (41), Expect(2) = 4.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 143  PPTVGFALLSLRPPSRECLLP 205
            PPT+ +A     PP    +LP
Sbjct: 1808 PPTMSYASALRAPPKPRPMLP 1828


>sp|Q8SQ05|RNAS1_LAGLA Ribonuclease pancreatic OS=Lagothrix
           lagotricha GN=RNASE1 PE=3 SV=1
          Length = 156

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 219 ILFFQWLQPAEGEERDTRAEERQQFE*GGSLHSNQFY 329
           +L   W+QP+ G+E   +  +RQ  +  GSL SN  Y
Sbjct: 17  LLVLGWVQPSLGKESRAKKFQRQHMDSDGSLSSNPTY 53


>sp|Q9WUS3|RNAS1_LEOED Ribonuclease pancreatic OS=Leopoldamys
           edwardsi GN=RNASE1 PE=2 SV=1
          Length = 149

 Score = 30.4 bits (67), Expect = 8.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 204 LFKVRILFFQWLQPAEGEERDTRAEERQQFE*GGSLHSNQFY 329
           LF + +L   W+QP+ G+E   +   RQ  +  GS +S+  Y
Sbjct: 9   LFSLLVLVLGWVQPSLGKESSAQKFNRQHMDTEGSSNSSPTY 50
tr_hit_id B8LQ60
Definition tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 133
Score (bit) 115.0
E-value 2.0e-24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948348|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_B08, 5'
         (676 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea...   115   2e-24
tr|Q84LB5|Q84LB5_CRYJA Cold acclimation protein COR413-TM1 OS=Cr...   100   8e-20
tr|B6T8R2|B6T8R2_MAIZE Cold acclimation WCOR413-like protein gam...    99   2e-19
tr|Q688W8|Q688W8_ORYSJ Os05g0566800 protein OS=Oryza sativa subs...    92   4e-17
tr|Q84XU8|Q84XU8_ORYSJ Cold acclimation protein COR413-TM1 OS=Or...    91   5e-17
tr|B8AWS3|B8AWS3_ORYSI Putative uncharacterized protein OS=Oryza...    91   5e-17
tr|Q84XU9|Q84XU9_WHEAT Cold acclimation protein COR413-TM1 OS=Tr...    89   3e-16
tr|Q8W0V1|Q8W0V1_HORVD Cold acclimation WCOR413-like protein gam...    88   4e-16
tr|Q84LB3|Q84LB3_MAIZE Truncated cold acclimation protein COR413...    87   1e-15
tr|B7ZY82|B7ZY82_MAIZE Putative uncharacterized protein OS=Zea m...    87   1e-15
tr|A3B6W4|A3B6W4_ORYSJ Putative uncharacterized protein OS=Oryza...    82   3e-14
tr|A7QQJ9|A7QQJ9_VITVI Chromosome undetermined scaffold_143, who...    81   5e-14
tr|Q9C7R2|Q9C7R2_ARATH Putative uncharacterized protein F15D2.29...    79   3e-13
tr|Q8RXM0|Q8RXM0_ARATH Putative uncharacterized protein At1g2939...    79   3e-13
tr|Q8L813|Q8L813_ARATH Putative uncharacterized protein At1g2939...    77   1e-12
tr|Q94AL8|Q94AL8_ARATH Putative uncharacterized protein At1g2939...    76   2e-12
tr|A9RCW6|A9RCW6_PHYPA Predicted protein (Fragment) OS=Physcomit...    70   1e-10
tr|Q93WS4|Q93WS4_PHYPA Cold acclimation protein WCOR413-like pro...    58   5e-07
tr|A9S4D3|A9S4D3_PHYPA Predicted protein OS=Physcomitrella paten...    58   5e-07
tr|A9SZ92|A9SZ92_PHYPA Predicted protein OS=Physcomitrella paten...    56   2e-06
tr|A9RWC5|A9RWC5_PHYPA Predicted protein OS=Physcomitrella paten...    53   2e-05
tr|A9S0S4|A9S0S4_PHYPA Predicted protein OS=Physcomitrella paten...    52   3e-05
tr|A9X4J8|A9X4J8_9MAGN Cold acclimation protein COR413-PM1 OS=Ch...    50   1e-04
tr|B5TV68|B5TV68_CAMSI Cold acclimation protein WCOR413-like pro...    49   2e-04
tr|A9NT54|A9NT54_PICSI Putative uncharacterized protein OS=Picea...    49   4e-04
tr|P93613|P93613_WHEAT Cold acclimation protein WCOR413 OS=Triti...    48   7e-04
tr|Q6PQ36|Q6PQ36_9CARY Putative stress-responsive protein OS=Tam...    47   0.001
tr|Q9XIM7|Q9XIM7_ARATH Similar to cold acclimation protein WCOR4...    46   0.002
tr|Q9FUW4|Q9FUW4_ORYSJ Os03g0767800 protein OS=Oryza sativa subs...    46   0.002
tr|Q93ZK5|Q93ZK5_WHEAT Cold acclimation protein WCOR413-like pro...    46   0.002

>tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 245

 Score =  115 bits (289), Expect = 2e-24
 Identities = 61/133 (45%), Positives = 80/133 (60%)
 Frame = +1

Query: 274 LKSGSNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPR 453
           + S + SS GGA +   S+ LS E LRW+F  AA VLM  K+T+INK+ LVPLLAL+AP 
Sbjct: 75  IHSIARSSYGGALSTECSVALSTEALRWLFGVAAVVLMLSKHTAINKSFLVPLLALEAPG 134

Query: 454 DVVTAVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIKRTTAALVV 633
           DV + +RG+YGLW AFL  LVRLFY                        +++ T A +V+
Sbjct: 135 DVFSWIRGDYGLWTAFLVFLVRLFYYIPGELELPFLFVLLVVIAPYQATNLRGTQAGMVI 194

Query: 634 SACVAAYLVYQHV 672
           S   +AYL+YQHV
Sbjct: 195 SMAASAYLIYQHV 207


>tr|Q84LB5|Q84LB5_CRYJA Cold acclimation protein COR413-TM1
           OS=Cryptomeria japonica PE=2 SV=1
          Length = 241

 Score =  100 bits (249), Expect = 8e-20
 Identities = 54/134 (40%), Positives = 75/134 (55%), Gaps = 3/134 (2%)
 Frame = +1

Query: 277 KSGSNSSKGGACT---ATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQA 447
           K G    +GG  +   A   +  S E LRW+FA ++ VLM+ K+T I K+ LVPLLALQA
Sbjct: 69  KLGGRGKRGGTSSIQCARVDLLYSTEALRWLFAVSSVVLMFSKHTVIRKSFLVPLLALQA 128

Query: 448 PRDVVTAVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIKRTTAAL 627
           P DVV+ +RG+YGLW AF   L+RLFY                         ++ T A++
Sbjct: 129 PGDVVSWIRGDYGLWTAFSIFLIRLFYPIPGEMELPLLFVLLVIIAPSQASSMRGTQASM 188

Query: 628 VVSACVAAYLVYQH 669
           V+S  ++AYL +QH
Sbjct: 189 VISTAISAYLSFQH 202


>tr|B6T8R2|B6T8R2_MAIZE Cold acclimation WCOR413-like protein gamma
           form OS=Zea mays PE=2 SV=1
          Length = 226

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 51/125 (40%), Positives = 71/125 (56%)
 Frame = +1

Query: 295 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 474
           S+G A    SS  LS   ++WI AGA+AVL+  K T+I+K+ LVP  ALQAP  +++ ++
Sbjct: 68  SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127

Query: 475 GEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIKRTTAALVVSACVAAY 654
           G+YG W AFLALLVRLF+                        D++ T    V+S  +AAY
Sbjct: 128 GDYGQWTAFLALLVRLFFFIPGELELPLSTMLLVSVAPYQFMDLRGTQGGAVLSLAIAAY 187

Query: 655 LVYQH 669
           L +QH
Sbjct: 188 LAFQH 192


>tr|Q688W8|Q688W8_ORYSJ Os05g0566800 protein OS=Oryza sativa subsp.
           japonica GN=OJ1781_H11.9 PE=2 SV=1
          Length = 222

 Score = 91.7 bits (226), Expect = 4e-17
 Identities = 47/128 (36%), Positives = 69/128 (53%)
 Frame = +1

Query: 286 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 465
           ++  +GGA    SS  LS   ++W+ AGA AVL+  K T+I+K+ LVPL AL AP  V++
Sbjct: 61  ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 466 AVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIKRTTAALVVSACV 645
            ++ +YG W AFLALLVRLF+                        +++ T     +S  +
Sbjct: 121 WIKSDYGQWTAFLALLVRLFFSIPGELELPLSTMLLVSVAPYQLMNLRGTQGGAALSLAL 180

Query: 646 AAYLVYQH 669
           A YL +QH
Sbjct: 181 AGYLAFQH 188


>tr|Q84XU8|Q84XU8_ORYSJ Cold acclimation protein COR413-TM1 OS=Oryza
           sativa subsp. japonica PE=2 SV=1
          Length = 222

 Score = 91.3 bits (225), Expect = 5e-17
 Identities = 47/128 (36%), Positives = 69/128 (53%)
 Frame = +1

Query: 286 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 465
           ++  +GGA    SS  LS   ++W+ AGA AVL+  K T+I+K+ LVPL AL AP  V++
Sbjct: 61  ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPSSVIS 120

Query: 466 AVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIKRTTAALVVSACV 645
            ++ +YG W AFLALLVRLF+                        +++ T     +S  +
Sbjct: 121 WIKSDYGQWTAFLALLVRLFFCIPGELELPLSTMLLVSVAPYQLMNLRGTQGGAALSLAL 180

Query: 646 AAYLVYQH 669
           A YL +QH
Sbjct: 181 AGYLAFQH 188


>tr|B8AWS3|B8AWS3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21013 PE=4 SV=1
          Length = 222

 Score = 91.3 bits (225), Expect = 5e-17
 Identities = 47/128 (36%), Positives = 69/128 (53%)
 Frame = +1

Query: 286 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 465
           ++  +GGA    SS  LS   ++W+ AGA AVL+  K T+I+K+ LVPL AL AP  V++
Sbjct: 61  ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 466 AVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIKRTTAALVVSACV 645
            ++ +YG W AFLALLVRLF+                        +++ T     +S  +
Sbjct: 121 WIKSDYGHWTAFLALLVRLFFSIPGELELPLSTMLLVSVAPYQLMNLRGTQGGAALSLAL 180

Query: 646 AAYLVYQH 669
           A YL +QH
Sbjct: 181 AGYLAFQH 188


>tr|Q84XU9|Q84XU9_WHEAT Cold acclimation protein COR413-TM1
           OS=Triticum aestivum PE=2 SV=1
          Length = 221

 Score = 89.0 bits (219), Expect = 3e-16
 Identities = 47/125 (37%), Positives = 65/125 (52%)
 Frame = +1

Query: 295 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 474
           S+G      +S  LS    +W+   AAAVL+  K T I+K+ LVPL  LQAP  V++ ++
Sbjct: 63  SRGSGIVCNASAYLSPPTTQWVSVAAAAVLLLAKGTGIHKSFLVPLFVLQAPTAVISWIK 122

Query: 475 GEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIKRTTAALVVSACVAAY 654
            EYGLW AFLAL+VRLF                         +++ T    +VS  +AAY
Sbjct: 123 SEYGLWTAFLALVVRLFLPFPGELELPLSTMLAVSVAPYQVMNVRGTQGGAIVSLALAAY 182

Query: 655 LVYQH 669
           L +QH
Sbjct: 183 LAFQH 187


>tr|Q8W0V1|Q8W0V1_HORVD Cold acclimation WCOR413-like protein gamma
           form OS=Hordeum vulgare var. distichum PE=2 SV=1
          Length = 215

 Score = 88.2 bits (217), Expect = 4e-16
 Identities = 47/125 (37%), Positives = 65/125 (52%)
 Frame = +1

Query: 295 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 474
           S+G     ++S  LS    +W+   AAAVL+  K T I+K+ LVPL  LQAP  V++ ++
Sbjct: 57  SRGSGIVCSASAYLSPPTTQWVSVAAAAVLLLAKGTGIHKSFLVPLFVLQAPTAVISWIK 116

Query: 475 GEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIKRTTAALVVSACVAAY 654
            EYGLW AFLAL VRLF                         +++ T    +VS  +AAY
Sbjct: 117 SEYGLWTAFLALAVRLFLPFPGELELPLSTMLAVSVAPYQVMNVRGTQGGTIVSLVLAAY 176

Query: 655 LVYQH 669
           L +QH
Sbjct: 177 LAFQH 181


>tr|Q84LB3|Q84LB3_MAIZE Truncated cold acclimation protein
           COR413-TM1 OS=Zea mays PE=2 SV=1
          Length = 177

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 41/78 (52%), Positives = 56/78 (71%)
 Frame = +1

Query: 295 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 474
           S+G A    SS  LS   ++WI AGA+AVL+  K T+I+K+ LVP  ALQAP  +++ ++
Sbjct: 68  SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127

Query: 475 GEYGLWAAFLALLVRLFY 528
           G+YG W AFLALLVRLF+
Sbjct: 128 GDYGQWTAFLALLVRLFF 145


>tr|B7ZY82|B7ZY82_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 177

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 41/78 (52%), Positives = 56/78 (71%)
 Frame = +1

Query: 295 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 474
           S+G A    SS  LS   ++WI AGA+AVL+  K T+I+K+ LVP  ALQAP  +++ ++
Sbjct: 68  SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127

Query: 475 GEYGLWAAFLALLVRLFY 528
           G+YG W AFLALLVRLF+
Sbjct: 128 GDYGQWTAFLALLVRLFF 145