DK948351 |
Clone id |
TST38A01NGRL0003_B11 |
Library |
TST38 |
Length |
661 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_B11. 5' end sequence. |
Accession |
DK948351 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL319Contig1 |
Sequence |
GGCGACCTCTCCTCTGTCCGTGGAAGTGCACAATCCCCATGGAAAATTGCGCGTCATCAG CACCAAGCCCATGCCTGGCTCCCGCTGGATTAAGCTTCTTGTCGATGCCGGGTGTCGAGT TGAGATTTGCACGGAAAAGAAGACTATTCTCAGTGTCGATGATATCAAACGTCTGATTGG AAGGAAGTGTGATGGCGTGATTGGCCAGCTCACTGAAGACTGGGGAGATGGCCTCTTTTC TTCCCTCAAAGCAGCCGGAGGCCATGCTTACAGCAACATGGCAGTTGGATACAACAATGT TAACGTTGAGGCGGCCACACGTAACGGTGTAGCTGTAGGCAATACACCAGGGGTTCTTAC CGAAACAACTGCCGAGCTTGCTGCGGCATTAACCTTAGCAGCTGCTCGACGGGTTGTTGA AGCTGATTACTTCATGCGGGCAGGAAAATATGATGGCTGGCTTCCAACTTTGTTCATCGG AAATTTGCTTAAAGGTCAGACAGTAGGCATTATTGGAGCGGGAAGGATTGGTTCTGCCTA CGCAAGGATGATGGTTGAAGGCTTTAAAATGAACGTTGTTTACTACGATCTCTATCAAGC AAGCAGACTTGAGAAGTTCGTAACAGCCTATGGCAAGTTTCTGGAGTCCCAAGGGGAAGC T |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P13443 |
Definition |
sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus |
Align length |
217 |
Score (bit) |
311.0 |
E-value |
3.0e-84 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948351|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0003_B11, 5' (661 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus ... 311 3e-84 sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus... 81 6e-15 sp|O58320|GYAR_PYRHO Glyoxylate reductase OS=Pyrococcus horikosh... 80 1e-14 sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litora... 79 2e-14 sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakara... 79 2e-14 sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptof... 79 3e-14 sp|Q9UYR1|GYAR_PYRAB Glyoxylate reductase OS=Pyrococcus abyssi G... 77 1e-13 sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix GN... 75 4e-13 sp|Q49ZM5|Y606_STAS1 Putative 2-hydroxyacid dehydrogenase SSP060... 67 1e-10 sp|Q5HLU4|Y1888_STAEQ Putative 2-hydroxyacid dehydrogenase SERP1... 64 5e-10 sp|Q8CNB8|Y1879_STAES Putative 2-hydroxyacid dehydrogenase SE_18... 64 5e-10 sp|Q4L8G4|Y752_STAHJ Putative 2-hydroxyacid dehydrogenase SH0752... 64 7e-10 sp|Q2FVW4|Y2577_STAA8 Putative 2-hydroxyacid dehydrogenase SAOUH... 64 7e-10 sp|Q6GEC9|Y2389_STAAR Putative 2-hydroxyacid dehydrogenase SAR23... 64 7e-10 sp|Q99RW8|Y2305_STAAM Putative 2-hydroxyacid dehydrogenase SAV23... 64 7e-10 sp|Q5HDQ4|Y2296_STAAC Putative 2-hydroxyacid dehydrogenase SACOL... 64 7e-10 sp|Q2FEI9|Y2254_STAA3 Putative 2-hydroxyacid dehydrogenase SAUSA... 64 7e-10 sp|Q8NV80|Y2224_STAAW Putative 2-hydroxyacid dehydrogenase MW222... 64 7e-10 sp|Q6G716|Y2196_STAAS Putative 2-hydroxyacid dehydrogenase SAS21... 64 7e-10 sp|Q2YYT9|Y2178_STAAB Putative 2-hydroxyacid dehydrogenase SAB21... 64 7e-10 sp|Q7A417|Y2098_STAAN Putative 2-hydroxyacid dehydrogenase SA209... 64 7e-10 sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens... 63 2e-09 sp|O32264|TKRA_BACSU Probable 2-ketogluconate reductase OS=Bacil... 61 5e-09 sp|Q59642|LDHD_PEDAC D-lactate dehydrogenase OS=Pediococcus acid... 60 8e-09 sp|P36234|DHGY_HYPME Glycerate dehydrogenase OS=Hyphomicrobium m... 59 3e-08 sp|O08651|SERA_RAT D-3-phosphoglycerate dehydrogenase OS=Rattus ... 57 7e-08 sp|Q61753|SERA_MOUSE D-3-phosphoglycerate dehydrogenase OS=Mus m... 57 9e-08 sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macac... 57 9e-08 sp|A5A6P1|SERA_PANTR D-3-phosphoglycerate dehydrogenase OS=Pan t... 57 1e-07 sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo ... 57 1e-07
>sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1 Length = 382
Score = 311 bits (796), Expect = 3e-84 Identities = 150/217 (69%), Positives = 174/217 (80%) Frame = +2
Query: 11 PLSVEVHNPHGKLRVISTKPMPGSRWIKLLVDAGCRVEICTEKKTILSVDDIKRLIGRKC 190 P+ +EV NP+GK RV+STKPMPG+RWI LL++ CRVEICTEKKTILSV+DI LIG KC Sbjct: 4 PVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIGDKC 63
Query: 191 DGVIGQLTEDWGDGLFSSLKAAGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXX 370 DGVIGQLTEDWG+ LFS+L AGG A+SNMAVGYNNV+V AA + GVAVGNTPG Sbjct: 64 DGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETT 123
Query: 371 XXXXXXXXXXXXXXXXXXDYFMRAGKYDGWLPTLFIGNLLKGQTVGIIGAGRIGSAYARM 550 D FMRAG+YDGWLP LF+GNLLKGQTVG+IGAGRIGSAYARM Sbjct: 124 AELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM 183
Query: 551 MVEGFKMNVVYYDLYQASRLEKFVTAYGKFLESQGEA 661 MVEGFKMN++Y+DLYQ++RLEKFVTAYG+FL++ GEA Sbjct: 184 MVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEA 220
>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1 Length = 336
Score = 80.9 bits (198), Expect = 6e-15 Identities = 63/205 (30%), Positives = 101/205 (49%), Gaps = 4/205 (1%) Frame = +2
Query: 44 KLRVISTKPMPGSRWIKLLVDAGCRVEICTEKKTILSVDDIKRLIGRKCDGVIGQLTEDW 223 K +V T+ +P I +L + VE+ E++ I ++++ + D ++ L+E Sbjct: 2 KPKVFITRAIP-ENGINMLEEE-FEVEVWEEEREIPREKLLEKV--KDVDALVTMLSERI 57
Query: 224 GDGLFSSLKAAGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXX 403 +F + A +N AVGY+N++VE ATR G+ V NTP Sbjct: 58 DQEVFEN--APRLRIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNATADHAFALLLAT 115
Query: 404 XXXXXXXDYFMRAGKYD----GWLPTLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKM 571 D F+R+G++ W P F+G L G+T+GI+G GRIG A AR +GF M Sbjct: 116 ARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQAIAR-RAKGFNM 174
Query: 572 NVVYYDLYQASRLEKFVTAYGKFLE 646 ++YY + S+ EK + A + LE Sbjct: 175 RILYYSRTRKSQAEKELGAEYRPLE 199
>sp|O58320|GYAR_PYRHO Glyoxylate reductase OS=Pyrococcus horikoshii GN=gyaR PE=1 SV=2 Length = 334
Score = 80.1 bits (196), Expect = 1e-14 Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 4/205 (1%) Frame = +2
Query: 44 KLRVISTKPMPGSRWIKLLVDAGCRVEICTEKKTILSVDDIKRLIGRKCDGVIGQLTEDW 223 K +V T+ +P IK+L D VE+ ++K I +K++ ++ D ++ L+E Sbjct: 2 KPKVFITREIP-EVGIKMLEDE-FEVEVWGDEKEIPREILLKKV--KEVDALVTMLSERI 57
Query: 224 GDGLFSSLKAAGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXX 403 +F + A +N AVGY+N+++E AT+ G+ V NTP Sbjct: 58 DKEVFEN--APKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLAT 115
Query: 404 XXXXXXXDYFMRAGKYD----GWLPTLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKM 571 D F+R+G++ W P F+G + G+T+GIIG GRIG A A+ +GF M Sbjct: 116 ARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAK-RAKGFNM 174
Query: 572 NVVYYDLYQASRLEKFVTAYGKFLE 646 ++YY + +E+ + A K LE Sbjct: 175 RILYYSRTRKEEVERELNAEFKPLE 199
>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1 Length = 331
Score = 79.0 bits (193), Expect = 2e-14 Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 4/120 (3%) Frame = +2
Query: 281 AVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKYD-- 454 AVGY+N+++E AT+ G+ V NTPG D F+R+G++ Sbjct: 75 AVGYDNIDIEEATKRGIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKS 134
Query: 455 --GWLPTLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNVVYYDLYQASRLEKFVTA 628 GW P +F+G LKG+T+GI+G GRIG A A+ +GF M ++YY + E+ + A Sbjct: 135 EVGWHPLMFLGYGLKGKTLGIVGFGRIGQALAK-RAKGFGMKIIYYSRTRKPEAEEEIGA 193
>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis GN=gyaR PE=3 SV=1 Length = 333
Score = 79.0 bits (193), Expect = 2e-14 Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 4/180 (2%) Frame = +2
Query: 119 VEICTEKKTILSVDDIKRLIGRKCDGVIGQLTEDWGDGLFSSLKAAGGHAYSNMAVGYNN 298 VE+ E++ I +K++ R D ++ L+E +F + A +N AVGY+N Sbjct: 25 VEVWPEEREIPREVLLKKV--RDVDALVTMLSERIDSEVFDA--APRLRIVANYAVGYDN 80
Query: 299 VNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKYD----GWLP 466 ++VE ATR G+ V NTP D+F R+G++ W P Sbjct: 81 IDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKRRGIAWHP 140
Query: 467 TLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNVVYYDLYQASRLEKFVTAYGKFLE 646 F+G + G+T+GI+G GRIG A AR GF M ++YY + EK + A + LE Sbjct: 141 RWFLGYDVYGKTIGIVGFGRIGQAVAR-RARGFGMRILYYSRSRKPEAEKELGAEFRSLE 199
>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1 Length = 332
Score = 78.6 bits (192), Expect = 3e-14 Identities = 47/146 (32%), Positives = 74/146 (50%), Gaps = 1/146 (0%) Frame = +2
Query: 182 RKCDGVIGQLTEDWGDGLFSSLKAAGGHAYSNMAVGYNNVNVEAATRNGVAVGNTPGXXX 361 + CD ++ LT+ +F + A + AVGY+N++V+ AT+ G+ V NTPG Sbjct: 44 KDCDALVSLLTDPIDAEVFEA--APKLRIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLT 101
Query: 362 XXXXXXXXXXXXXXXXXXXXXDYFMRAGKYD-GWLPTLFIGNLLKGQTVGIIGAGRIGSA 538 D ++R GK+ W P + +G + G+T+GI+G GRIG+A Sbjct: 102 ETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAA 161
Query: 539 YARMMVEGFKMNVVYYDLYQASRLEK 616 AR +GF M ++YYD + EK Sbjct: 162 VAR-RAKGFGMRILYYDSIRREDFEK 186
>sp|Q9UYR1|GYAR_PYRAB Glyoxylate reductase OS=Pyrococcus abyssi GN=gyaR PE=3 SV=1 Length = 335
Score = 76.6 bits (187), Expect = 1e-13 Identities = 46/129 (35%), Positives = 66/129 (51%), Gaps = 4/129 (3%) Frame = +2
Query: 272 SNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKY 451 +N AVGY+N++VE AT+ G+ V NTPG D F R+G++ Sbjct: 73 ANYAVGYDNIDVEEATKRGIYVTNTPGVLTDATADLAFALLLATARHLVKGDKFTRSGEW 132
Query: 452 D----GWLPTLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNVVYYDLYQASRLEKF 619 W P F+G + G+T+GIIG GRIG A A+ GF M ++YY + +EK Sbjct: 133 KKRGVAWHPKWFLGYDVYGKTIGIIGFGRIGQAIAK-RARGFDMRILYYSRTRKPEVEKE 191
Query: 620 VTAYGKFLE 646 + A K L+ Sbjct: 192 LNAEFKPLD 200
>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2 Length = 335
Score = 74.7 bits (182), Expect = 4e-13 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 4/129 (3%) Frame = +2
Query: 272 SNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKY 451 + MAVG++N++VE ATR G+ V NTPG D+F+R G++ Sbjct: 73 AQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRWGEW 132
Query: 452 ----DGWLPTLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNVVYYDLYQASRLEKF 619 GW P + +G L+G+T+GI+G GRIGS A + + F M ++Y+ + +EK Sbjct: 133 WRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAE-IGKAFGMRIIYHSRSRKREIEKE 191
Query: 620 VTAYGKFLE 646 + A + LE Sbjct: 192 LGAEYRSLE 200
>sp|Q49ZM5|Y606_STAS1 Putative 2-hydroxyacid dehydrogenase SSP0606 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0606 PE=3 SV=1 Length = 318
Score = 66.6 bits (161), Expect = 1e-10 Identities = 50/180 (27%), Positives = 80/180 (44%) Frame = +2
Query: 89 IKLLVDAGCRVEICTEKKTILSVDDIKRLIGRKCDGVIGQLTEDWGDGLFSSLKAAGGHA 268 + LL D G V++ E I+ + +K+ + + D +I L+ + + A Sbjct: 15 LNLLKDQGFEVDMY-EGTGIIDKETLKQGV-KDADALISLLSTSVDKEVIDA--ANNLKI 70
Query: 269 YSNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGK 448 +N G+NNV+++ A + + V NTP D R Sbjct: 71 ITNYGAGFNNVDIDYARQQNIDVTNTPKASTNSTAELTFALVLAVARRIPEGDKLCRTTG 130
Query: 449 YDGWLPTLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNVVYYDLYQASRLEKFVTA 628 +DGW P F G + G+T+GIIG G IGSA AR + F MN++Y +Q E+ + A Sbjct: 131 FDGWAPLFFRGREVSGKTIGIIGLGEIGSAVAR-RAKAFDMNILYTGPHQKVDKEREIGA 189
>sp|Q5HLU4|Y1888_STAEQ Putative 2-hydroxyacid dehydrogenase SERP1888 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1888 PE=3 SV=1 Length = 317
Score = 64.3 bits (155), Expect = 5e-10 Identities = 36/119 (30%), Positives = 54/119 (45%) Frame = +2
Query: 272 SNMAVGYNNVNVEAATRNGVAVGNTPGXXXXXXXXXXXXXXXXXXXXXXXXDYFMRAGKY 451 +N G+NN++VE A + + V NTP D+ R + Sbjct: 71 ANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDHLSRTTGF 130
Query: 452 DGWLPTLFIGNLLKGQTVGIIGAGRIGSAYARMMVEGFKMNVVYYDLYQASRLEKFVTA 628 DGW P F G + G+T+GIIG G IG A A+ F M+V+Y ++ E+ + A Sbjct: 131 DGWAPLFFRGREVSGKTIGIIGLGEIGGAVAK-RARAFDMDVLYTGPHRKEEKERDIGA 188
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RE03 |
Definition |
tr|A9RE03|A9RE03_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
219 |
Score (bit) |
321.0 |
E-value |
2.0e-86 |
Report |
|