DK948396 |
Clone id |
TST38A01NGRL0003_D08 |
Library |
TST38 |
Length |
678 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_D08. 5' end sequence. |
Accession |
DK948396 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL627Contig1 |
Sequence |
GAAGAATTCGCGACATCATTCGTGCACAGAGCCATGGCGATGGCAATGTTTCTGCAGCAG CAAGGGGAGGAAAGTTCCCAAAAAACTAATATGTTTTTGATGGGGCGGCAGGATTCATCC TCTGCCGCGACATCGTTTGGCACCACGCTTGCCAAATCGCCACTCTCCCACACACAGTAT CCATACGTTACTGGATCATCAGTTTTAGGAATAAAGTACAAGGATGGTATTCTCATAGCA GCGGACTGTGGAGGTTCTTATGGCTCCACCTTACGCTACAAGAGTGTTGAGAGATTGAAG TCTGTTGGGAAGTTCTCTGTCATAGGAGGAAGTGGAGAAATCAGTGATTTCCAGCAAATC ATGCGCTACCTTGACGAGCTAACGCTGAATGATAGAATGTGGGATGATGGAAACAGTATC GGTCCCAAGGAAGTTCACAACTATCTATGCCGTGTCATGTACAATCGTCGCAATAAGTTT GATCCGCTTTGGAACACACTTATTCTTGGGGGTGTTAAGAAAGGTGTTAAGTATCTGGGC ATGGTCTCTATGATAGGTGTTCATTTTCGAGAAAACCACGTGGCATCTGGTTTTGGTAAT CATTTGGCTCGACCAATATTCAGAGATGAATGGAAAGAGGAGTTAACATTTGGAAGAAGG CATTCTTTTGCTTGAGAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q7DLR9 |
Definition |
sp|Q7DLR9|PSB4_ARATH Proteasome subunit beta type-4 OS=Arabidopsis thaliana |
Align length |
168 |
Score (bit) |
243.0 |
E-value |
9.0e-64 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NKT0 |
Definition |
tr|A9NKT0|A9NKT0_PICSI Proteasome subunit beta type OS=Picea sitchensis |
Align length |
169 |
Score (bit) |
261.0 |
E-value |
3.0e-68 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948396|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0003_D08, 5' (678 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NKT0|A9NKT0_PICSI Proteasome subunit beta type OS=Picea sit... 261 3e-68 tr|A7NZG0|A7NZG0_VITVI Proteasome subunit beta type OS=Vitis vin... 244 5e-63 tr|B7FJ04|B7FJ04_MEDTR Putative uncharacterized protein OS=Medic... 243 8e-63 tr|Q9LST4|Q9LST4_ORYSJ Proteasome subunit beta type OS=Oryza sat... 236 1e-60 tr|A3C0M0|A3C0M0_ORYSJ Putative uncharacterized protein OS=Oryza... 236 1e-60 tr|B8BDI8|B8BDI8_ORYSI Putative uncharacterized protein OS=Oryza... 236 1e-60 tr|B4FN21|B4FN21_MAIZE Proteasome subunit beta type 4 OS=Zea may... 234 3e-60 tr|B6TQ65|B6TQ65_MAIZE Proteasome subunit beta type 4 OS=Zea may... 234 4e-60 tr|B6T9F7|B6T9F7_MAIZE Proteasome subunit beta type 4 OS=Zea may... 234 4e-60 tr|B4FCX3|B4FCX3_MAIZE Putative uncharacterized protein OS=Zea m... 234 4e-60 tr|B4FPN1|B4FPN1_MAIZE Putative uncharacterized protein OS=Zea m... 233 1e-59 tr|A9RDU9|A9RDU9_PHYPA Proteasome subunit beta type OS=Physcomit... 229 2e-58 tr|A9RFG0|A9RFG0_PHYPA Proteasome subunit beta type OS=Physcomit... 207 4e-52 tr|A9NVK0|A9NVK0_PICSI Putative uncharacterized protein OS=Picea... 203 7e-51 tr|Q93X29|Q93X29_TOBAC Putative beta7 proteasome subunit (Fragme... 192 2e-47 tr|A8J212|A8J212_CHLRE Proteasome subunit beta type OS=Chlamydom... 176 2e-42 tr|A4RXP2|A4RXP2_OSTLU Proteasome subunit beta type OS=Ostreococ... 170 7e-41 tr|Q018W2|Q018W2_OSTTA Proteasome subunit beta type OS=Ostreococ... 166 1e-39 tr|Q5XUV5|Q5XUV5_WHEAT Proteasome subunit beta type OS=Triticum ... 163 1e-38 tr|A8E7N8|A8E7N8_DANRE Proteasome subunit beta type OS=Danio rer... 147 6e-34 tr|Q5RJU8|Q5RJU8_XENTR Proteasome subunit beta type OS=Xenopus t... 143 9e-33 tr|Q4SZT8|Q4SZT8_TETNG Chromosome undetermined SCAF11492, whole ... 143 9e-33 tr|Q28BW4|Q28BW4_XENTR Proteasome subunit beta type OS=Xenopus t... 143 9e-33 tr|B5XFR6|B5XFR6_SALSA Proteasome subunit beta type-4 OS=Salmo s... 142 3e-32 tr|A5DCH4|A5DCH4_PICGU Putative uncharacterized protein OS=Pichi... 142 3e-32 tr|Q90ZQ5|Q90ZQ5_ONCMY Proteasome subunit beta type OS=Oncorhync... 141 4e-32 tr|B5X9D0|B5X9D0_SALSA Proteasome subunit beta type-4 OS=Salmo s... 141 4e-32 tr|Q7T0M9|Q7T0M9_XENLA Proteasome subunit beta type OS=Xenopus l... 140 6e-32 tr|B5X7W0|B5X7W0_SALSA Proteasome subunit beta type-4 OS=Salmo s... 140 1e-31 tr|B5X5F6|B5X5F6_SALSA Proteasome subunit beta type-4 OS=Salmo s... 139 1e-31
>tr|A9NKT0|A9NKT0_PICSI Proteasome subunit beta type OS=Picea sitchensis PE=2 SV=1 Length = 262
Score = 261 bits (667), Expect = 3e-68 Identities = 120/169 (71%), Positives = 140/169 (82%) Frame = +1
Query: 145 TLAKSPLSHTQYPYVTGSSVLGIKYKDGILIAADCGGSYGSTLRYKSVERLKSVGKFSVI 324 TL SP+SHTQYPYVTG+SVLGIKYKDG+L+A+D GGSYGSTLRYKSV+RLK +GK +++ Sbjct: 31 TLLNSPISHTQYPYVTGTSVLGIKYKDGVLLASDMGGSYGSTLRYKSVQRLKPIGKHTLL 90
Query: 325 GGSGEISDFQQIMRYLDELTLNDRMWDDGNSIGPKEVHNYLCRVMYNRRNKFDPLWNTXX 504 G GEISDFQ+I+RYLDEL L D MWDDGNS+GPKEVHNYL R+MYNRRNKF+PLWNT Sbjct: 91 GAGGEISDFQEIVRYLDELILYDNMWDDGNSLGPKEVHNYLNRLMYNRRNKFNPLWNTLV 150
Query: 505 XXXXXXXXXXXXXXSMIGVHFRENHVASGFGNHLARPIFRDEWKEELTF 651 +MIGVH+ ENHVA+GFGNHLARPIFRDEW E++TF Sbjct: 151 LGGVKNGQKYLGTVNMIGVHYEENHVATGFGNHLARPIFRDEWHEDMTF 199
>tr|A7NZG0|A7NZG0_VITVI Proteasome subunit beta type OS=Vitis vinifera GN=GSVIVT00024499001 PE=3 SV=1 Length = 245
Score = 244 bits (622), Expect = 5e-63 Identities = 113/160 (70%), Positives = 131/160 (81%) Frame = +1
Query: 172 TQYPYVTGSSVLGIKYKDGILIAADCGGSYGSTLRYKSVERLKSVGKFSVIGGSGEISDF 351 T YPYVTG+SV+G+KYKDGIL+AAD GGSYGSTLRYKSVER+K +GK S++G SGEISDF Sbjct: 23 TLYPYVTGTSVIGVKYKDGILMAADMGGSYGSTLRYKSVERMKPIGKHSLLGASGEISDF 82
Query: 352 QQIMRYLDELTLNDRMWDDGNSIGPKEVHNYLCRVMYNRRNKFDPLWNTXXXXXXXXXXX 531 Q+I+ YLDEL L D MWDDGNS+GPKEVH+YL RVMYNRRNKF+PLWN+ Sbjct: 83 QEILHYLDELILYDNMWDDGNSLGPKEVHSYLTRVMYNRRNKFNPLWNSLVLGGVKNGQK 142
Query: 532 XXXXXSMIGVHFRENHVASGFGNHLARPIFRDEWKEELTF 651 SMIGVHF +NHVA+GFGNHLARPI RDEW E+L+F Sbjct: 143 YLGTVSMIGVHFEDNHVATGFGNHLARPILRDEWHEDLSF 182
>tr|B7FJ04|B7FJ04_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 249
Score = 243 bits (620), Expect = 8e-63 Identities = 116/160 (72%), Positives = 129/160 (80%) Frame = +1
Query: 172 TQYPYVTGSSVLGIKYKDGILIAADCGGSYGSTLRYKSVERLKSVGKFSVIGGSGEISDF 351 T YPYVTGSSV+ IKYKDGIL+AAD GGSYGSTLRYKSVERLK +GK S++G SGEISDF Sbjct: 10 TLYPYVTGSSVVAIKYKDGILMAADMGGSYGSTLRYKSVERLKPIGKHSLLGASGEISDF 69
Query: 352 QQIMRYLDELTLNDRMWDDGNSIGPKEVHNYLCRVMYNRRNKFDPLWNTXXXXXXXXXXX 531 Q+IMRYLDEL L D MWDDGNS+GPKEVHNYL RVMYNRRNKF+PLWN+ Sbjct: 70 QEIMRYLDELILIDNMWDDGNSLGPKEVHNYLTRVMYNRRNKFNPLWNSLVLGGVKKGQK 129
Query: 532 XXXXXSMIGVHFRENHVASGFGNHLARPIFRDEWKEELTF 651 SMIGV++ +NHVA+G GNHLARPI RDEW E LTF Sbjct: 130 YLGTVSMIGVNYEDNHVATGLGNHLARPILRDEWNENLTF 169
>tr|Q9LST4|Q9LST4_ORYSJ Proteasome subunit beta type OS=Oryza sativa subsp. japonica GN=OsPBG1 PE=2 SV=1 Length = 256
Score = 236 bits (602), Expect = 1e-60 Identities = 111/184 (60%), Positives = 138/184 (75%), Gaps = 5/184 (2%) Frame = +1
Query: 115 SSSAATSFGTTLAKSP-LSHTQYPYVTGSSVLGIKYKDGILIAADCGGSYGSTLRYKSVE 291 S ++ + +A P TQYPYVTGSS++ +KYKDG+++A+D G SYGSTLRYKSVE Sbjct: 10 SHASGSKAAAAVADGPGTQRTQYPYVTGSSIIALKYKDGVIMASDTGASYGSTLRYKSVE 69
Query: 292 RLKSVGKFSVIGGSGEISDFQQIMRYLDELTLNDRMWDDGNSIGPKEVHNYLCRVMYNRR 471 R+K+VGK S+IG SGE SDFQ+I+RYLDELTL+D MWDDGNS+GPKEVH+YL RVMYNRR Sbjct: 70 RIKAVGKHSLIGASGEFSDFQEILRYLDELTLSDHMWDDGNSLGPKEVHSYLTRVMYNRR 129
Query: 472 NKFDPLWNT----XXXXXXXXXXXXXXXXSMIGVHFRENHVASGFGNHLARPIFRDEWKE 639 NKFDPLWN+ +MIG HF ENH+A+GFGNH+A PI R EW+E Sbjct: 130 NKFDPLWNSLVIGGVKKGPKGEEKYLGMVNMIGTHFEENHIATGFGNHMAIPILRTEWRE 189
Query: 640 ELTF 651 ++TF Sbjct: 190 DMTF 193
>tr|A3C0M0|A3C0M0_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_028842 PE=3 SV=1 Length = 582
Score = 236 bits (602), Expect = 1e-60 Identities = 111/184 (60%), Positives = 138/184 (75%), Gaps = 5/184 (2%) Frame = +1
Query: 115 SSSAATSFGTTLAKSP-LSHTQYPYVTGSSVLGIKYKDGILIAADCGGSYGSTLRYKSVE 291 S ++ + +A P TQYPYVTGSS++ +KYKDG+++A+D G SYGSTLRYKSVE Sbjct: 336 SHASGSKAAAAVADGPGTQRTQYPYVTGSSIIALKYKDGVIMASDTGASYGSTLRYKSVE 395
Query: 292 RLKSVGKFSVIGGSGEISDFQQIMRYLDELTLNDRMWDDGNSIGPKEVHNYLCRVMYNRR 471 R+K+VGK S+IG SGE SDFQ+I+RYLDELTL+D MWDDGNS+GPKEVH+YL RVMYNRR Sbjct: 396 RIKAVGKHSLIGASGEFSDFQEILRYLDELTLSDHMWDDGNSLGPKEVHSYLTRVMYNRR 455
Query: 472 NKFDPLWNT----XXXXXXXXXXXXXXXXSMIGVHFRENHVASGFGNHLARPIFRDEWKE 639 NKFDPLWN+ +MIG HF ENH+A+GFGNH+A PI R EW+E Sbjct: 456 NKFDPLWNSLVIGGVKKGPKGEEKYLGMVNMIGTHFEENHIATGFGNHMAIPILRTEWRE 515
Query: 640 ELTF 651 ++TF Sbjct: 516 DMTF 519
>tr|B8BDI8|B8BDI8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_32035 PE=4 SV=1 Length = 262
Score = 236 bits (601), Expect = 1e-60 Identities = 112/187 (59%), Positives = 138/187 (73%), Gaps = 5/187 (2%) Frame = +1
Query: 106 RQDSSSAATSFGTTLAKSP-LSHTQYPYVTGSSVLGIKYKDGILIAADCGGSYGSTLRYK 282 +Q + S +A P TQYPYVTGSS++ +KYKDG+++A+D G SYGSTLRYK Sbjct: 13 QQPMDGSHASGSKAVADGPGTQRTQYPYVTGSSIIALKYKDGVIMASDTGASYGSTLRYK 72
Query: 283 SVERLKSVGKFSVIGGSGEISDFQQIMRYLDELTLNDRMWDDGNSIGPKEVHNYLCRVMY 462 SVER+K+VGK S+IG SGE SDFQ+I+RYLDELTL+D MWDDGNS+GPKEVH+YL RVMY Sbjct: 73 SVERIKAVGKHSLIGASGEFSDFQEILRYLDELTLSDHMWDDGNSLGPKEVHSYLTRVMY 132
Query: 463 NRRNKFDPLWNT----XXXXXXXXXXXXXXXXSMIGVHFRENHVASGFGNHLARPIFRDE 630 NRRNKFDPLWN+ +MIG HF ENH+A+GFGNH+A PI R E Sbjct: 133 NRRNKFDPLWNSLVIGGVKKGPKGEEKYLGMVNMIGTHFEENHIATGFGNHMAIPILRTE 192
Query: 631 WKEELTF 651 W+E++TF Sbjct: 193 WREDMTF 199
>tr|B4FN21|B4FN21_MAIZE Proteasome subunit beta type 4 OS=Zea mays PE=2 SV=1 Length = 263
Score = 234 bits (598), Expect = 3e-60 Identities = 112/182 (61%), Positives = 135/182 (74%), Gaps = 4/182 (2%) Frame = +1
Query: 118 SSAATSFGTTLAKSPLSHTQYPYVTGSSVLGIKYKDGILIAADCGGSYGSTLRYKSVERL 297 S AA G T TQYPYVTG+SV+ +KYKDG+++A D G SYGSTLRYKSVER+ Sbjct: 25 SQAAAGGGAT------QRTQYPYVTGNSVIALKYKDGVIMACDTGASYGSTLRYKSVERI 78
Query: 298 KSVGKFSVIGGSGEISDFQQIMRYLDELTLNDRMWDDGNSIGPKEVHNYLCRVMYNRRNK 477 K+VGK S+IG SGE SDFQ+I+RYLDELTL+D MWDDGNS+GPKE+H+YL RVMYNRRNK Sbjct: 79 KAVGKHSIIGASGEFSDFQEILRYLDELTLSDHMWDDGNSLGPKEIHSYLTRVMYNRRNK 138
Query: 478 FDPLWNT----XXXXXXXXXXXXXXXXSMIGVHFRENHVASGFGNHLARPIFRDEWKEEL 645 FDPLWN+ +MIG HF ENHVA+GFGNH+A PI R EW++++ Sbjct: 139 FDPLWNSLVLGGVKKGPKGDEKYLGMVNMIGTHFEENHVATGFGNHMAIPILRAEWRDDM 198
Query: 646 TF 651 TF Sbjct: 199 TF 200
>tr|B6TQ65|B6TQ65_MAIZE Proteasome subunit beta type 4 OS=Zea mays PE=2 SV=1 Length = 263
Score = 234 bits (597), Expect = 4e-60 Identities = 113/182 (62%), Positives = 134/182 (73%), Gaps = 4/182 (2%) Frame = +1
Query: 118 SSAATSFGTTLAKSPLSHTQYPYVTGSSVLGIKYKDGILIAADCGGSYGSTLRYKSVERL 297 S AA G T TQYPYVTG+SV+ +KYKDG+++A D G SYGSTLRYKSVER+ Sbjct: 25 SQAAAGGGAT------QRTQYPYVTGTSVIALKYKDGVIMACDTGASYGSTLRYKSVERI 78
Query: 298 KSVGKFSVIGGSGEISDFQQIMRYLDELTLNDRMWDDGNSIGPKEVHNYLCRVMYNRRNK 477 K+VGK S+IG SGE SDFQ+I+RYLDELTL+D MWDDGNS+GPKE+H+YL RVMYNRRNK Sbjct: 79 KAVGKHSIIGASGEFSDFQEILRYLDELTLSDHMWDDGNSLGPKEIHSYLTRVMYNRRNK 138
Query: 478 FDPLWNT----XXXXXXXXXXXXXXXXSMIGVHFRENHVASGFGNHLARPIFRDEWKEEL 645 FDPLWN+ +MIG HF ENHVA+GF NHLA PI R EW+E++ Sbjct: 139 FDPLWNSLVLGGVKKGPKGDEKYLGMVNMIGTHFEENHVATGFANHLAIPILRAEWREDM 198
Query: 646 TF 651 TF Sbjct: 199 TF 200
>tr|B6T9F7|B6T9F7_MAIZE Proteasome subunit beta type 4 OS=Zea mays PE=2 SV=1 Length = 263
Score = 234 bits (597), Expect = 4e-60 Identities = 112/182 (61%), Positives = 135/182 (74%), Gaps = 4/182 (2%) Frame = +1
Query: 118 SSAATSFGTTLAKSPLSHTQYPYVTGSSVLGIKYKDGILIAADCGGSYGSTLRYKSVERL 297 S AA G T TQYPYVTG+SV+ +KYKDG+++A D G SYGSTLRYKSVER+ Sbjct: 25 SXAAAGGGAT------QRTQYPYVTGNSVIALKYKDGVIMACDTGASYGSTLRYKSVERI 78
Query: 298 KSVGKFSVIGGSGEISDFQQIMRYLDELTLNDRMWDDGNSIGPKEVHNYLCRVMYNRRNK 477 K+VGK S+IG SGE SDFQ+I+RYLDELTL+D MWDDGNS+GPKE+H+YL RVMYNRRNK Sbjct: 79 KAVGKHSIIGASGEFSDFQEILRYLDELTLSDHMWDDGNSLGPKEIHSYLTRVMYNRRNK 138
Query: 478 FDPLWNT----XXXXXXXXXXXXXXXXSMIGVHFRENHVASGFGNHLARPIFRDEWKEEL 645 FDPLWN+ +MIG HF ENHVA+GFGNH+A PI R EW++++ Sbjct: 139 FDPLWNSLVLGGVKKGPKGDEKYLGMVNMIGTHFEENHVATGFGNHMAIPILRAEWRDDM 198
Query: 646 TF 651 TF Sbjct: 199 TF 200
>tr|B4FCX3|B4FCX3_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 263
Score = 234 bits (597), Expect = 4e-60 Identities = 113/182 (62%), Positives = 134/182 (73%), Gaps = 4/182 (2%) Frame = +1
Query: 118 SSAATSFGTTLAKSPLSHTQYPYVTGSSVLGIKYKDGILIAADCGGSYGSTLRYKSVERL 297 S AA G T TQYPYVTG+SV+ +KYKDG+++A D G SYGSTLRYKSVER+ Sbjct: 25 SQAAAGGGAT------QRTQYPYVTGTSVIALKYKDGVIMACDTGASYGSTLRYKSVERI 78
Query: 298 KSVGKFSVIGGSGEISDFQQIMRYLDELTLNDRMWDDGNSIGPKEVHNYLCRVMYNRRNK 477 K+VGK S+IG SGE SDFQ+I+RYLDELTL+D MWDDGNS+GPKE+H+YL RVMYNRRNK Sbjct: 79 KAVGKHSIIGASGEFSDFQEILRYLDELTLSDHMWDDGNSLGPKEIHSYLTRVMYNRRNK 138
Query: 478 FDPLWNT----XXXXXXXXXXXXXXXXSMIGVHFRENHVASGFGNHLARPIFRDEWKEEL 645 FDPLWN+ +MIG HF ENHVA+GF NHLA PI R EW+E++ Sbjct: 139 FDPLWNSLVLGGVKKGPKGDEKYLGMVNMIGTHFEENHVATGFANHLAIPILRAEWREDM 198
Query: 646 TF 651 TF Sbjct: 199 TF 200
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