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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948401
Clone id TST38A01NGRL0003_D13
Library
Length 598
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_D13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
ACCATTTCAGCTTGAGAGTCCACAATACAATTTAAAATCGTAGTTTTATCTTCTTAGTTC
AGGAAGAACCGATCTTCCTGTGGAAGAATGCAAAAAGGAAAGCATTTGGACATGAATATG
AAGGGGTATTTGGGAATTTTGGACAAATTTAAGGGCATTTTTGGTAAATTAGGGGTATTT
TGGGATTTCTTTTGGTAATTTTCCCTCGAGTTTAGGTAGAAATGGCTCTTGTTTGGATTG
CTTGGCTTGTTAAGATCTCCATCTTATGGAGGTACCTATGCTTGTGTTTCAGGTCTCAGC
AAGTGTGCTTCATTTGCAATGAGCCAGGCCATAGAGCTGCCACGTGCCCAAGGCGCTGAG
AGATGAGATAATGGAGAGGCTCATTGATCCTACACAATGGTTGGATGTATCAGTTGAGAG
GTATTCATTTTACTCAAAGCTCGGAGAGTCGAGTATCTAGTACTTCAAGCGCAATGCATC
TGGCTCCCTGCAACTACTTGAAAGCTGATGTAAGCCGTGAGTCTTATTAAGGTGACTCCN
AATTGCTATCAGGAAATTGAAGCGATCATTTATCAAGTGACAAGTATATAACCTGCTG
■■Homology search results ■■ -
sp_hit_id P31622
Definition sp|P31622|GAG_JSRV Gag polyprotein OS=Sheep pulmonary adenomatosis virus
Align length 17
Score (bit) 36.2
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948401|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_D13, 5'
         (598 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P31622|GAG_JSRV Gag polyprotein OS=Sheep pulmonary adenomatos...    36   0.13 
sp|Q9I8A9|HIF1A_XENLA Hypoxia-inducible factor 1 alpha OS=Xenopu...    31   4.1  
sp|P03322|GAG_RSVP Gag polyprotein OS=Rous sarcoma virus (strain...    30   7.1  
sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago may...    30   7.1  
sp|Q8R1J3|ZCHC9_MOUSE Zinc finger CCHC domain-containing protein...    30   9.2  
sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3 OS=Ory...    30   9.2  
sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3 OS=Ara...    30   9.2  
sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1 OS=Caenorh...    30   9.2  

>sp|P31622|GAG_JSRV Gag polyprotein OS=Sheep pulmonary adenomatosis
           virus GN=gag PE=4 SV=1
          Length = 612

 Score = 36.2 bits (82), Expect = 0.13
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 306 CFICNEPGHRAATCPRR 356
           CF+C +PGHRAA CP++
Sbjct: 509 CFVCGQPGHRAAVCPQK 525


>sp|Q9I8A9|HIF1A_XENLA Hypoxia-inducible factor 1 alpha OS=Xenopus
           laevis GN=hif1a PE=2 SV=1
          Length = 805

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = -3

Query: 338 SSMAWLIANEAHLLRPETQA*VPP*DGDLNKPSNPNKSHFYLNSRENYQKKSQNTPNLPK 159
           S +  +I +  H+++  T A V P +G+ ++ S+P +    +  +   +K    TPNLP 
Sbjct: 614 SDLKTIIQSPVHMMKESTSAPVSPYNGNRSRTSSPVRPAKAVVDKT--EKSRPGTPNLP- 670

Query: 158 MPLN 147
           +PLN
Sbjct: 671 VPLN 674


>sp|P03322|GAG_RSVP Gag polyprotein OS=Rous sarcoma virus (strain
           Prague C) GN=gag PE=1 SV=1
          Length = 701

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 291 RSQQVCFICNEPGHRAATCPRR 356
           R++ +C+ C  PGH  A CP++
Sbjct: 504 RARGLCYTCGSPGHYQAQCPKK 525


>sp|Q4P0H7|BBP_USTMA Branchpoint-bridging protein OS=Ustilago maydis
           GN=BBP PE=3 SV=1
          Length = 625

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +3

Query: 300 QVCFICNEPGHRAATCPRR*EMR*WRGSLILH 395
           Q+C  C   GHRA  CP   E R W   +I H
Sbjct: 368 QLCKNCGNKGHRAFECP---EQRNWTAHIICH 396


>sp|Q8R1J3|ZCHC9_MOUSE Zinc finger CCHC domain-containing protein 9
           OS=Mus musculus GN=Zcchc9 PE=2 SV=1
          Length = 273

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 291 RSQQVCFICNEPGHRAATCP 350
           ++  VCF C +PGH  A CP
Sbjct: 125 KNAMVCFHCRQPGHGIADCP 144


>sp|Q0DM51|RH3_ORYSJ DEAD-box ATP-dependent RNA helicase 3 OS=Oryza
           sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2
          Length = 758

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 306 CFICNEPGHRAATCPRR 356
           CF C E GHRA+ CP +
Sbjct: 742 CFNCGESGHRASDCPNK 758


>sp|Q8L7S8|RH3_ARATH DEAD-box ATP-dependent RNA helicase 3
           OS=Arabidopsis thaliana GN=RH3 PE=2 SV=2
          Length = 748

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +3

Query: 306 CFICNEPGHRAATCP 350
           CFIC + GHRA  CP
Sbjct: 729 CFICGKSGHRATDCP 743


>sp|P34689|GLH1_CAEEL ATP-dependent RNA helicase glh-1
           OS=Caenorhabditis elegans GN=glh-1 PE=1 SV=3
          Length = 763

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 306 CFICNEPGHRAATCP 350
           CF C +PGHR++ CP
Sbjct: 160 CFNCQQPGHRSSDCP 174
tr_hit_id B5H9Z7
Definition tr|B5H9Z7|B5H9Z7_STRPR Rhs protein OS=Streptomyces pristinaespiralis ATCC 25486
Align length 76
Score (bit) 36.6
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948401|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_D13, 5'
         (598 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5H9Z7|B5H9Z7_STRPR Rhs protein OS=Streptomyces pristinaespir...    37   1.1  
tr|B8NJ19|B8NJ19_ASPFL Zinc knuckle nucleic acid binding protein...    37   1.1  
tr|A1D997|A1D997_NEOFI Zinc knuckle domain protein OS=Neosartory...    37   1.1  
tr|A1CG20|A1CG20_ASPCL Zinc knuckle domain protein OS=Aspergillu...    37   1.1  
tr|Q9WR75|Q9WR75_JSRV Gag polyprotein OS=Sheep pulmonary adenoma...    36   1.5  
tr|Q9WJ20|Q9WJ20_9BETR Gag polyprotein OS=Ovine enzootic nasal t...    36   1.5  
tr|Q95N68|Q95N68_JSRV Gag polyprotein OS=Sheep pulmonary adenoma...    36   1.5  
tr|Q83955|Q83955_JSRV Gag polyprotein (Fragment) OS=Sheep pulmon...    36   1.5  
tr|Q7SMF1|Q7SMF1_9BETR Gag polyprotein OS=Enzootic nasal tumour ...    36   1.5  
tr|A9S7H7|A9S7H7_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.5  
tr|Q9TTD5|Q9TTD5_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   1.5  
tr|Q9N1S0|Q9N1S0_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   1.5  
tr|Q09PL2|Q09PL2_SHEEP Gag protein OS=Ovis aries GN=gag PE=4 SV=1      36   1.5  
tr|A9LHP4|A9LHP4_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   1.5  
tr|A9LHN2|A9LHN2_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   1.5  
tr|A9LHM8|A9LHM8_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   1.5  
tr|A9LHM0|A9LHM0_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   1.5  
tr|A9LHL3|A9LHL3_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   1.5  
tr|A9LHJ8|A9LHJ8_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   1.5  
tr|A9LHJ3|A9LHJ3_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   1.5  
tr|A9LHI8|A9LHI8_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              36   1.5  
tr|Q9Y8H2|Q9Y8H2_TRIMT Gag OS=Tricholoma matsutake PE=4 SV=1           36   1.5  
tr|Q6BDM1|Q6BDM1_TRIMT Group specific antigen of marY1 (Fragment...    36   1.5  
tr|Q55HB3|Q55HB3_CRYNE Putative uncharacterized protein OS=Crypt...    36   1.5  
tr|Q2QV09|Q2QV09_ORYSJ Retrotransposon protein, putative, unclas...    36   1.9  
tr|B0XDD6|B0XDD6_CULQU Predicted protein OS=Culex quinquefasciat...    36   1.9  
tr|Q4Q1A0|Q4Q1A0_LEIMA Putative uncharacterized protein OS=Leish...    35   2.5  
tr|A4IDA7|A4IDA7_LEIIN Putative uncharacterized protein OS=Leish...    35   2.5  
tr|A9LHN7|A9LHN7_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              35   3.3  
tr|A9LHM7|A9LHM7_SHEEP Gag OS=Ovis aries GN=gag PE=4 SV=1              35   3.3  

>tr|B5H9Z7|B5H9Z7_STRPR Rhs protein OS=Streptomyces pristinaespiralis
            ATCC 25486 GN=SSDG_01872 PE=4 SV=1
          Length = 1054

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
 Frame = -3

Query: 344  RGSSMAWLIANEAHLLRPETQA*VPP*DGDLNKPSNP-NKSHFYLNSREN--YQKKSQNT 174
            RGS  AW ++  A+ +R    A     D D  +P  P  + H+Y    EN  Y++     
Sbjct: 971  RGSGTAWEMSEVAYAVRNYDGA-AAWGDPDSERPGRPWEEIHWYTRDEENGGYKEIKVPK 1029

Query: 173  PNLPKMPLNLSKIPKY 126
            P++P++  +LSK+PK+
Sbjct: 1030 PDIPEIQPDLSKLPKH 1045


>tr|B8NJ19|B8NJ19_ASPFL Zinc knuckle nucleic acid binding protein,
           putative OS=Aspergillus flavus NRRL3357 GN=AFLA_071360
           PE=4 SV=1
          Length = 238

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 252 KISILWRYLCLCFRSQQVCFICNEPGHRAATCPR 353
           K   +  Y  +C  S+++C+ C +PGH +++CPR
Sbjct: 10  KCGNIGHYAEVCSSSERLCYNCKQPGHESSSCPR 43


>tr|A1D997|A1D997_NEOFI Zinc knuckle domain protein OS=Neosartorya
           fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181)
           GN=NFIA_114910 PE=4 SV=1
          Length = 237

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 252 KISILWRYLCLCFRSQQVCFICNEPGHRAATCPR 353
           K   +  Y  +C  S+++C+ C +PGH +++CPR
Sbjct: 10  KCGNIGHYAEVCSSSERLCYNCKQPGHESSSCPR 43


>tr|A1CG20|A1CG20_ASPCL Zinc knuckle domain protein OS=Aspergillus
           clavatus GN=ACLA_065340 PE=4 SV=1
          Length = 236

 Score = 36.6 bits (83), Expect = 1.1
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +3

Query: 252 KISILWRYLCLCFRSQQVCFICNEPGHRAATCPR 353
           K   +  Y  +C  S+++C+ C +PGH +++CPR
Sbjct: 10  KCGNIGHYAEVCSSSERLCYNCKQPGHESSSCPR 43


>tr|Q9WR75|Q9WR75_JSRV Gag polyprotein OS=Sheep pulmonary
           adenomatosis virus GN=gag PE=4 SV=1
          Length = 611

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 306 CFICNEPGHRAATCPRR 356
           CF+C +PGHRAA CP++
Sbjct: 508 CFVCGQPGHRAAVCPQK 524


>tr|Q9WJ20|Q9WJ20_9BETR Gag polyprotein OS=Ovine enzootic nasal
           tumour virus GN=gag PE=4 SV=1
          Length = 613

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 306 CFICNEPGHRAATCPRR 356
           CF+C +PGHRAA CP++
Sbjct: 510 CFVCGQPGHRAAVCPQK 526


>tr|Q95N68|Q95N68_JSRV Gag polyprotein OS=Sheep pulmonary
           adenomatosis virus GN=gag PE=4 SV=1
          Length = 611

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 306 CFICNEPGHRAATCPRR 356
           CF+C +PGHRAA CP++
Sbjct: 508 CFVCGQPGHRAAVCPQK 524


>tr|Q83955|Q83955_JSRV Gag polyprotein (Fragment) OS=Sheep pulmonary
           adenomatosis virus PE=2 SV=1
          Length = 228

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 306 CFICNEPGHRAATCPRR 356
           CF+C +PGHRAA CP++
Sbjct: 198 CFVCGQPGHRAAVCPQK 214


>tr|Q7SMF1|Q7SMF1_9BETR Gag polyprotein OS=Enzootic nasal tumour
           virus of goats PE=4 SV=1
          Length = 612

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +3

Query: 306 CFICNEPGHRAATCPRR 356
           CF+C +PGHRAA CP++
Sbjct: 509 CFVCGQPGHRAAVCPQK 525


>tr|A9S7H7|A9S7H7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_125455 PE=4 SV=1
          Length = 689

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +3

Query: 303 VCFICNEPGHRAATC 347
           VCFICN+PGHRAA C
Sbjct: 672 VCFICNQPGHRAADC 686