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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948419
Clone id TST38A01NGRL0003_E07
Library
Length 683
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_E07. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
ATCGTCTTCCCCACAAGCAGAAAAATGCATTGAAAAAAAACATATTCATAGGAGAAACCC
CCTCTCAGAGAGTAAAATAGGAAAAGAAAAGCTTCAATCATCTTCTGCCCAAGCGTGCTT
TCCATTGCTTCTCTGCATCAAAGCGTACTGTGGGGAAAGCGCTTACTTTTCATAAGTGTG
TGAGTGTCTGTGGCTGTGTGTGTCTGTGTGTGTGTGCCCCGCTTTTATACCCTCCTCCTC
GACTGTTTCGCCTTTCCAACAAAAGAAGCTTTATTCACTTCCCTCCTTTCATCTCGCAGA
CAGACACAGATACACGCAGGCCTTGCCTTCAACAGAGTTTTGTCGTATAGCTTCCATGGA
GACCTCGGCTATGCTTTCTCCCCTCAGGTTTGGTGTCCATCACGAACTCATGCGCAAGCA
CCCCCACCCCCCAGAGCCTTCAGAGCCGTGGGTACCACCTACTCCTGAGCCCAATTTCAG
AATTGACGACCTGCTGGACTTCTCCAACGGCGAGCTTTGTGATGAATTTGACGAAGAGGA
GGAGGAGCAATTGAAAGAGGGGAATTCGAGCTGTGGCGATGGTGGCATTGAGCTGAAGGC
CGACAGGTGTGTGGCGCAAGAAGAAAGCCAACAGCTGGCAACGACAAGCGGTCTCTGTGT
GCCGGTAATGGCCCTCTCTTCCT
■■Homology search results ■■ -
sp_hit_id Q98UK5
Definition sp|Q98UK5|MAFB_DANRE Transcription factor MafB OS=Danio rerio
Align length 62
Score (bit) 31.6
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948419|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_E07, 5'
         (683 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q98UK5|MAFB_DANRE Transcription factor MafB OS=Danio rerio GN...    32   4.1  
sp|P17101|HBSAG_HBVA4 Large envelope protein OS=Hepatitis B viru...    31   5.4  
sp|Q6K977|C3H19_ORYSJ Zinc finger CCCH domain-containing protein...    31   5.4  
sp|Q8MYE8|PAAF1_DICDI Probable proteasomal ATPase-associated fac...    31   7.0  
sp|Q4R1S6|HBSAG_HBVA8 Large envelope protein OS=Hepatitis B viru...    31   7.0  
sp|Q91C35|HBSAG_HBVA6 Large envelope protein OS=Hepatitis B viru...    31   7.0  
sp|Q5KMN5|YTH1_CRYNE mRNA 3'-end-processing protein YTH1 OS=Cryp...    30   9.1  
sp|O91534|HBSAG_HBVA7 Large envelope protein OS=Hepatitis B viru...    30   9.1  
sp|P03141|HBSAG_HBVA3 Large envelope protein OS=Hepatitis B viru...    30   9.1  
sp|P03142|HBSAG_HBVA2 Large envelope protein OS=Hepatitis B viru...    30   9.1  

>sp|Q98UK5|MAFB_DANRE Transcription factor MafB OS=Danio rerio
           GN=mafb PE=2 SV=1
          Length = 356

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 20/62 (32%), Positives = 24/62 (38%)
 Frame = -1

Query: 674 GPLPAHRDRLSLPAVGFLLAPHTCRPSAQCHHRHSSNSPLSIAPPPLRQIHHKARRWRSP 495
           G +P H D LS         PH        HH H S  P S +P    Q+HH+      P
Sbjct: 168 GAIPHHPDDLSGHPGAHGHHPH------HHHHHHHSQDPDSPSPTSPEQLHHRHHHHHHP 221

Query: 494 AG 489
            G
Sbjct: 222 HG 223


>sp|P17101|HBSAG_HBVA4 Large envelope protein OS=Hepatitis B virus
           genotype A2 subtype adw2 (isolate Germany/991/1990) GN=S
           PE=1 SV=3
          Length = 400

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -1

Query: 638 PAVGFLLAPHTCRPSAQCHHRHSSNSPLSIAPPPLRQIHHKARRWRSPAGRQ 483
           P    +L P +  P     +R S   P  I+PP LR  H +A +W S A  Q
Sbjct: 79  PQAQGMLTPVSTIPPPASANRQSGRQPTPISPP-LRDSHPQAMQWNSTAFHQ 129


>sp|Q6K977|C3H19_ORYSJ Zinc finger CCCH domain-containing protein 19
           OS=Oryza sativa subsp. japonica GN=Os02g0831100 PE=2
           SV=2
          Length = 647

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 677 RGPLPAH--RDRLSLPAVGFLLAPHTCRPSAQCHHRHS 570
           R P+ A   R R S   + FL +P TC+  ++C +RHS
Sbjct: 6   RPPVDAEEARRRRSTDCIYFLASPLTCKKGSECEYRHS 43


>sp|Q8MYE8|PAAF1_DICDI Probable proteasomal ATPase-associated factor
           1 OS=Dictyostelium discoideum GN=paaf1 PE=3 SV=1
          Length = 425

 Score = 30.8 bits (68), Expect = 7.0
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
 Frame = +3

Query: 396 SITNSCASTP-------TPQSLQSRGYHLLLSPISELTTCWTSPTASFVMNLTKRRR 545
           +I  +CAST        T  SL  RG +L+       +  W  PT+S + NLTK  R
Sbjct: 174 AIEGTCASTLVGHIGGITSASLVDRGRNLVSCSRDGTSKLWDIPTSSIISNLTKLSR 230


>sp|Q4R1S6|HBSAG_HBVA8 Large envelope protein OS=Hepatitis B virus
           genotype A3 (isolate Cameroon/CMR983/1994) GN=S PE=1
           SV=1
          Length = 400

 Score = 30.8 bits (68), Expect = 7.0
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 599 PSAQCHHRHSSNSPLSIAPPPLRQIHHKARRWRSPAGRQ 483
           P     +R S   P  I+PP LR  H +A +W SPA  Q
Sbjct: 92  PPPASANRQSGRQPTPISPP-LRDSHPQAIKWNSPAFHQ 129


>sp|Q91C35|HBSAG_HBVA6 Large envelope protein OS=Hepatitis B virus
           genotype A1 subtype adw2 (isolate South Africa/84/2001)
           GN=S PE=1 SV=1
          Length = 389

 Score = 30.8 bits (68), Expect = 7.0
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = -1

Query: 674 GPLPAHRDRL--SLPAVGFLLAPHTCRPSAQCHHRHSSNSPLSIAPPPLRQIHHKARRWR 501
           G  P H   L  S  A G L    T  P+A  + R S   P  I+PP LR  H +A +W 
Sbjct: 55  GHSPPHGGVLGWSPQAQGILTTVPTVPPTASTN-RQSGRQPTPISPP-LRDSHPQAMQWN 112

Query: 500 SPAGRQ 483
           S A  Q
Sbjct: 113 STALHQ 118


>sp|Q5KMN5|YTH1_CRYNE mRNA 3'-end-processing protein YTH1
           OS=Cryptococcus neoformans GN=YTH1 PE=3 SV=1
          Length = 332

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 599 PSAQCHHRHSSNSPLSIAPPPLRQIHHKAR 510
           P +QC +RH++ S L+  PPP    H + R
Sbjct: 63  PPSQCPYRHTTPSQLNFKPPPPLPAHPRER 92


>sp|O91534|HBSAG_HBVA7 Large envelope protein OS=Hepatitis B virus
           genotype A2 (isolate Japan/11D11HCCW/1998) GN=S PE=1
           SV=1
          Length = 400

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = -1

Query: 635 AVGFLLAPHTCRPSAQCHHRHSSNSPLSIAPPPLRQIHHKARRWRSPAGRQ 483
           A G L    T  P A  + R S   P  I+PP LR  H +A +W S A  Q
Sbjct: 81  AQGILTTVSTIPPPASTN-RQSGRQPTPISPP-LRDSHPQAMQWNSTAFHQ 129


>sp|P03141|HBSAG_HBVA3 Large envelope protein OS=Hepatitis B virus
           genotype A2 subtype adw2 (strain Rutter 1979) GN=S PE=1
           SV=3
          Length = 400

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = -1

Query: 635 AVGFLLAPHTCRPSAQCHHRHSSNSPLSIAPPPLRQIHHKARRWRSPAGRQ 483
           A G L    T  P A  + R S   P  I+PP LR  H +A +W S A  Q
Sbjct: 81  AQGILTTVSTIPPPASTN-RQSGRQPTPISPP-LRDSHPQAMQWNSTAFHQ 129


>sp|P03142|HBSAG_HBVA2 Large envelope protein OS=Hepatitis B virus
           genotype A2 subtype adw (isolate Japan/Nishioka/1983)
           GN=S PE=1 SV=4
          Length = 389

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -1

Query: 674 GPLPAHRDRL--SLPAVGFLLAPHTCRPSAQCHHRHSSNSPLSIAPPPLRQIHHKARRWR 501
           G  P H   L  S  A G L    T  P A  + R S   P  I+PP LR  H +A +W 
Sbjct: 55  GLTPPHGGILGWSPQAQGILTTVSTIPPPASTN-RQSGRQPTPISPP-LRDSHPQAMQWN 112

Query: 500 SPAGRQ 483
           S A  Q
Sbjct: 113 STALHQ 118
tr_hit_id Q91C42
Definition tr|Q91C42|Q91C42_HBV Large envelope protein OS=Hepatitis B virus
Align length 64
Score (bit) 34.7
E-value 5.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948419|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_E07, 5'
         (683 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q91C42|Q91C42_HBV Large envelope protein OS=Hepatitis B virus...    35   5.8  
tr|B5HS19|B5HS19_9ACTO Beta-lactamase OS=Streptomyces sviceus AT...    35   5.8  
tr|Q6Z8A3|Q6Z8A3_ORYSJ Putative uncharacterized protein P0017H11...    35   5.8  
tr|Q0IML3|Q0IML3_ORYSJ Os12g0562800 protein OS=Oryza sativa subs...    35   5.8  
tr|A9VC57|A9VC57_MONBE Predicted protein OS=Monosiga brevicollis...    35   5.8  
tr|A9UZS3|A9UZS3_MONBE Predicted protein OS=Monosiga brevicollis...    35   5.8  
tr|A3BUA3|A3BUA3_ORYSJ Putative uncharacterized protein OS=Oryza...    34   7.6  
tr|Q4T167|Q4T167_TETNG Chromosome 18 SCAF10707, whole genome sho...    34   9.9  
tr|B6D6W2|B6D6W2_HBV Large S protein (Fragment) OS=Hepatitis B v...    34   9.9  

>tr|Q91C42|Q91C42_HBV Large envelope protein OS=Hepatitis B virus
           PE=4 SV=1
          Length = 372

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 26/64 (40%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -1

Query: 674 GPLPAHRDRL--SLPAVGFLLAPHTCRPSAQCHHRHSSNSPLSIAPPPLRQIHHKARRWR 501
           G  P H   L  S  A G L    T  P A  + R S   P  I+PP LR  H +A +W 
Sbjct: 55  GLTPPHGGILGWSPQAQGILATLPTIPPPASTN-RQSGRQPTPISPP-LRDSHPQAMQWN 112

Query: 500 SPAG 489
           SPAG
Sbjct: 113 SPAG 116


>tr|B5HS19|B5HS19_9ACTO Beta-lactamase OS=Streptomyces sviceus ATCC
           29083 GN=SSEG_08863 PE=4 SV=1
          Length = 382

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -1

Query: 665 PAHRDRLSLPAVGFLL-APHTCRPSAQCHHRHSSNSPLSIAPPPLRQIHHKARRWRSPA 492
           P   DR + P+  +   +P   RP+  C     S  P +  PPP RQ+ H+  R  +PA
Sbjct: 288 PPSADRRTAPSGAYSSPSPRAIRPAKPCKEETWSPPPPTTHPPPRRQMPHRPLRHATPA 346


>tr|Q6Z8A3|Q6Z8A3_ORYSJ Putative uncharacterized protein P0017H11.8
           (Putative uncharacterized protein OJ1148_D05.20)
           OS=Oryza sativa subsp. japonica GN=P0017H11.8 PE=4 SV=1
          Length = 181

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 19/36 (52%), Positives = 22/36 (61%)
 Frame = -1

Query: 644 SLPAVGFLLAPHTCRPSAQCHHRHSSNSPLSIAPPP 537
           SLP    L AP T R ++ CH RH S+SP S A PP
Sbjct: 146 SLPPPSTLAAP-TFRFASHCHRRHPSSSPSSGATPP 180


>tr|Q0IML3|Q0IML3_ORYSJ Os12g0562800 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0562800 PE=4 SV=1
          Length = 99

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 614 PHTCRPSAQCHHRHSSNSPLSIAPPPLRQIHHKARR 507
           PH   P A+ HH H+   P    PPP+R   H AR+
Sbjct: 26  PHLADPHARAHHHHARKRP--PPPPPIRLTEHTARQ 59


>tr|A9VC57|A9VC57_MONBE Predicted protein OS=Monosiga brevicollis
           GN=34507 PE=4 SV=1
          Length = 1025

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
 Frame = +2

Query: 176 VCECLWLCVSVCVCP-----AFIPSSSTVSPFQQKKLYSLP 283
           VC C+ +CV VCVCP       +PSS  VS     +L S+P
Sbjct: 376 VCVCVCVCVCVCVCPCPCPSVPLPSSVPVSDAHAHELLSVP 416


>tr|A9UZS3|A9UZS3_MONBE Predicted protein OS=Monosiga brevicollis
           GN=25559 PE=4 SV=1
          Length = 1171

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = +2

Query: 65  SESKIGKEKLQSSSAQACFPLL----LCIKAYCGESAYFS*VCECLWLCVSVCVC 217
           SE K  +  L+ +SA    PLL    +  +A   E +  S VC C+ +CV VCVC
Sbjct: 676 SEVKQVQSNLRQASAPLAHPLLEEAPVRYRAKASEPSSSSEVCVCVCVCVCVCVC 730


>tr|A3BUA3|A3BUA3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_026625 PE=4 SV=1
          Length = 310

 Score = 34.3 bits (77), Expect = 7.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 650 RLSLPAVGFLLAPHTCRPSAQCHHRHSSNSPLSIAPP 540
           R ++PA    L PH C+    CHHR + +  L + PP
Sbjct: 193 RATVPANLHQLFPHICKRDLHCHHRETLHGALVLLPP 229


>tr|Q4T167|Q4T167_TETNG Chromosome 18 SCAF10707, whole genome
           shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00008976001 PE=3 SV=1
          Length = 356

 Score = 33.9 bits (76), Expect = 9.9
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -2

Query: 253 RRNSRGGGYKSGAHTHRHTQPQTLTH 176
           RR   GGG + G HTH HT   T TH
Sbjct: 316 RRKRGGGGREHGTHTHTHTHTHTHTH 341


>tr|B6D6W2|B6D6W2_HBV Large S protein (Fragment) OS=Hepatitis B
           virus GN=S PE=4 SV=1
          Length = 211

 Score = 33.9 bits (76), Expect = 9.9
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 674 GPLPAHRDRL--SLPAVGFLLAPHTCRPSAQCHHRHSSNSPLSIAPPPLRQIHHKARRWR 501
           G  P H + L  S  A G L       P A  + R S   P  I+PP LR  H +A +W+
Sbjct: 66  GFTPPHGNLLGWSPQAQGILTTVPAAPPPASTN-RQSGRQPTPISPP-LRDSHPQAMQWK 123

Query: 500 SPAG 489
           +PAG
Sbjct: 124 APAG 127