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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948431
Clone id TST38A01NGRL0003_E19
Library
Length 347
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_E19. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGAAGGAAGGAAGGAGGTGCAGAAGCCATGACGAGCGCGTTAGATATGGCGCTTGATGAT
CTGATTAAGACCAACAAGCAGAGCTCGGGAGAAGGTAGAGGCAGGGGTGGGCGTGGCCGA
GCGCGCCGAGGCCGGGGCGCCTCTTCTGCGGGTCCGATTCGCAAGAATTCCACTCGATCT
ACCACCCGCCCGTCCCCCTACTCTTTCACCACGCCTGCACAGAGAGCTCCAGAGGGTCAG
TGGGATCATGATTTGTATGAGGAAGGTGCAAGTGTGGCTCCTTTGCGACCAAATACAGGA
ATTGAGACAGGCTCTAAGCTTTTTATATCCAACTTGGATTTTGGGGG
■■Homology search results ■■ -
sp_hit_id Q9JJW6
Definition sp|Q9JJW6|REFP2_MOUSE RNA and export factor-binding protein 2 OS=Mus musculus
Align length 106
Score (bit) 42.4
E-value 0.0007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948431|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_E19, 5'
         (347 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9JJW6|REFP2_MOUSE RNA and export factor-binding protein 2 OS...    42   7e-04
sp|O08583|THOC4_MOUSE THO complex subunit 4 OS=Mus musculus GN=T...    39   0.006
sp|Q86V81|THOC4_HUMAN THO complex subunit 4 OS=Homo sapiens GN=T...    39   0.006
sp|Q56B11|PELP1_RAT Proline-, glutamic acid- and leucine-rich pr...    29   8.3  
sp|P49280|NRAM1_SHEEP Natural resistance-associated macrophage p...    29   8.3  

>sp|Q9JJW6|REFP2_MOUSE RNA and export factor-binding protein 2
           OS=Mus musculus GN=Refbp2 PE=1 SV=1
          Length = 218

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 28/106 (26%), Positives = 40/106 (37%)
 Frame = +1

Query: 28  MTSALDMALDDLIKTNKQXXXXXXXXXXXXXXXXXXXXXXXXPIRKNXXXXXXXXXXXXX 207
           M   +DM+LDD+IK N+                           R+N             
Sbjct: 1   MADKMDMSLDDIIKLNRNQRRVNRGGGP----------------RRNRPAIARGGRNRPA 44

Query: 208 XXXAQRAPEGQWDHDLYEEGASVAPLRPNTGIETGSKLFISNLDFG 345
                +    +W HDL++ G          G+ETG+KL +SNLDFG
Sbjct: 45  PYSRPKPLPDKWQHDLFDSGCG-----GGEGVETGAKLLVSNLDFG 85


>sp|O08583|THOC4_MOUSE THO complex subunit 4 OS=Mus musculus
           GN=Thoc4 PE=1 SV=3
          Length = 255

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +1

Query: 238 QWDHDLYEEGASVAPLRPNTGIETGSKLFISNLDFG 345
           +W HDL++ G          G+ETG KL +SNLDFG
Sbjct: 85  KWQHDLFDSGFG-----GGAGVETGGKLLVSNLDFG 115


>sp|Q86V81|THOC4_HUMAN THO complex subunit 4 OS=Homo sapiens
           GN=THOC4 PE=1 SV=3
          Length = 257

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = +1

Query: 238 QWDHDLYEEGASVAPLRPNTGIETGSKLFISNLDFG 345
           +W HDL++ G          G+ETG KL +SNLDFG
Sbjct: 86  KWQHDLFDSGFG-----GGAGVETGGKLLVSNLDFG 116


>sp|Q56B11|PELP1_RAT Proline-, glutamic acid- and leucine-rich protein
            1 OS=Rattus norvegicus GN=Pelp1 PE=2 SV=2
          Length = 1130

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 170  PLDLPPARPPTLSPRLHRELQRVSGIMI 253
            P  LPPA PPT SP++  E +   G+++
Sbjct: 981  PPTLPPALPPTDSPKVQPEAEPEPGLLL 1008


>sp|P49280|NRAM1_SHEEP Natural resistance-associated macrophage
           protein 1 OS=Ovis aries GN=SLC11A1 PE=2 SV=2
          Length = 548

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 155 RFARIPLDLPPARPPTLSPRLHRELQRVSGIMICMRKVQVWLL 283
           RFAR+ L    A PPT+   + R+LQ +SG+   +  +Q  LL
Sbjct: 394 RFARVLLTRSCAIPPTVLLAVFRDLQDLSGLNDLLNVLQSLLL 436
tr_hit_id A9RE63
Definition tr|A9RE63|A9RE63_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 109
Score (bit) 56.2
E-value 8.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948431|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_E19, 5'
         (347 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RE63|A9RE63_PHYPA Predicted protein OS=Physcomitrella paten...    56   8e-07
tr|A7NZ48|A7NZ48_VITVI Chromosome chr6 scaffold_3, whole genome ...    53   9e-06
tr|A5BY89|A5BY89_VITVI Putative uncharacterized protein OS=Vitis...    53   9e-06
tr|Q3E888|Q3E888_ARATH Uncharacterized protein At5g59950.3 OS=Ar...    51   3e-05
tr|Q9FJE1|Q9FJE1_ARATH RNA and export factor binding protein 2-I...    50   4e-05
tr|Q8L773|Q8L773_ARATH Transcriptional coactivator-like protein ...    50   4e-05
tr|B3H4K4|B3H4K4_ARATH Uncharacterized protein At5g59950.4 OS=Ar...    50   4e-05
tr|A9S944|A9S944_PHYPA Predicted protein OS=Physcomitrella paten...    50   4e-05
tr|Q8LCA6|Q8LCA6_ARATH Transcriptional coactivator-like protein ...    48   3e-04
tr|Q1MSH0|Q1MSH0_NICBE ALY protein OS=Nicotiana benthamiana GN=a...    47   6e-04
tr|Q68VB6|Q68VB6_NICBE ALY protein OS=Nicotiana benthamiana GN=a...    45   0.002
tr|Q9LZ49|Q9LZ49_ARATH Putative uncharacterized protein T22P11_1...    44   0.005
tr|Q8L719|Q8L719_ARATH Putative uncharacterized protein At5g0253...    44   0.005
tr|Q68VB5|Q68VB5_NICBE ALY protein OS=Nicotiana benthamiana GN=a...    43   0.007
tr|Q10N90|Q10N90_ORYSJ Os03g0278300 protein OS=Oryza sativa subs...    43   0.007
tr|A2XF57|A2XF57_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.007
tr|B6TMR7|B6TMR7_MAIZE THO complex subunit 4 OS=Zea mays PE=2 SV=1     43   0.009
tr|B6T346|B6T346_MAIZE Putative uncharacterized protein OS=Zea m...    43   0.009
tr|A9SGU2|A9SGU2_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.009
tr|Q4KL64|Q4KL64_MOUSE RNA and export factor binding protein 2 O...    42   0.012
tr|B4FUT7|B4FUT7_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.020
tr|B4FQD9|B4FQD9_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.020
tr|A9TZS6|A9TZS6_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.020
tr|Q4S9L1|Q4S9L1_TETNG Chromosome undetermined SCAF14696, whole ...    40   0.044
tr|B5FXP6|B5FXP6_TAEGU Putative disulfide-isomerase OS=Taeniopyg...    40   0.044
tr|B5FXP4|B5FXP4_TAEGU Putative disulfide-isomerase OS=Taeniopyg...    40   0.044
tr|B5FXN8|B5FXN8_TAEGU Putative disulfide-isomerase OS=Taeniopyg...    40   0.044
tr|A5ATR5|A5ATR5_VITVI Putative uncharacterized protein OS=Vitis...    40   0.044
tr|B5XA68|B5XA68_SALSA THO complex subunit 4 OS=Salmo salar GN=T...    40   0.058
tr|B6L0D9|B6L0D9_BRAFL Putative uncharacterized protein OS=Branc...    40   0.058

>tr|A9RE63|A9RE63_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_112481 PE=4 SV=1
          Length = 249

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 38/109 (34%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
 Frame = +1

Query: 28  MTSALDMALDDLIKTNKQXXXXXXXXXXXXXXXXXXXXXXXXPIRKNXXXXXXXXXXXXX 207
           MTSALDM+LDDLIKTNK                            +              
Sbjct: 1   MTSALDMSLDDLIKTNKTATRGGRGGGGGGGGGGG----------RGAAPASRRGGATAA 50

Query: 208 XXXAQRAPEGQWDHDLYEEGASVAPLRPNT---GIETGSKLFISNLDFG 345
               +R P+  W HD+YE     AP        GIETG+KL+ISNLD+G
Sbjct: 51  ADGVRRDPDSTWQHDMYENFLPAAPSSGRGVTGGIETGTKLYISNLDYG 99


>tr|A7NZ48|A7NZ48_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024369001
           PE=4 SV=1
          Length = 243

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
 Frame = +1

Query: 28  MTSALDMALDDLIKTNKQXXXXXXXXXXXXXXXXXXXXXXXXPIRKNXXXXXXXXXXXXX 207
           M++ALDM+LDDLIK NK+                        P R+              
Sbjct: 1   MSNALDMSLDDLIKNNKRSGGGGNARGRGRGSGPG-------PARR----LPNRGANRIT 49

Query: 208 XXXAQRAPEGQWDHDLYEEGASVAPLRPN--TGIETGSKLFISNLDFG 345
                +APE  W HD++ + A+  P +    + IETG+KL+ISNLD+G
Sbjct: 50  PYSVSKAPETTWQHDMFADQAAAYPAQAGRTSAIETGTKLYISNLDYG 97


>tr|A5BY89|A5BY89_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_023787 PE=4 SV=1
          Length = 281

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
 Frame = +1

Query: 28  MTSALDMALDDLIKTNKQXXXXXXXXXXXXXXXXXXXXXXXXPIRKNXXXXXXXXXXXXX 207
           M++ALDM+LDDLIK NK+                        P R+              
Sbjct: 1   MSNALDMSLDDLIKNNKRSGGGGNARGRGRGSGPG-------PARR----LPNRGANRIT 49

Query: 208 XXXAQRAPEGQWDHDLYEEGASVAPLRPN--TGIETGSKLFISNLDFG 345
                +APE  W HD++ + A+  P +    + IETG+KL+ISNLD+G
Sbjct: 50  PYSVSKAPETTWQHDMFADQAAAYPAQAGRTSAIETGTKLYISNLDYG 97


>tr|Q3E888|Q3E888_ARATH Uncharacterized protein At5g59950.3
           OS=Arabidopsis thaliana GN=At5g59950 PE=4 SV=1
          Length = 242

 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
 Frame = +1

Query: 28  MTSALDMALDDLIKTNKQXXXXXXXXXXXXXXXXXXXXXXXXPIRKNXXXXXXXXXXXXX 207
           M++ LDM+LDD+I  N++                        P RK+             
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPY------- 53

Query: 208 XXXAQRAPEGQWDHDLYEEGASVAPL-RPNTGIETGSKLFISNLDFG 345
               Q APE  W HD++ + +      R + GIETG+KL+ISNLD+G
Sbjct: 54  ----QSAPESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYG 96


>tr|Q9FJE1|Q9FJE1_ARATH RNA and export factor binding protein
           2-I-like protein OS=Arabidopsis thaliana PE=4 SV=1
          Length = 239

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
 Frame = +1

Query: 28  MTSALDMALDDLIKTNKQXXXXXXXXXXXXXXXXXXXXXXXXPIRKNXXXXXXXXXXXXX 207
           M++ LDM+LDD+I  N++                        P RK+             
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQ------ 54

Query: 208 XXXAQRAPEGQWDHDLYEEGASVAPL-RPNTGIETGSKLFISNLDFG 345
              + +APE  W HD++ + +      R + GIETG+KL+ISNLD+G
Sbjct: 55  ---SAKAPESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYG 98


>tr|Q8L773|Q8L773_ARATH Transcriptional coactivator-like protein
           OS=Arabidopsis thaliana GN=At5g59950 PE=2 SV=1
          Length = 244

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
 Frame = +1

Query: 28  MTSALDMALDDLIKTNKQXXXXXXXXXXXXXXXXXXXXXXXXPIRKNXXXXXXXXXXXXX 207
           M++ LDM+LDD+I  N++                        P RK+             
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQ------ 54

Query: 208 XXXAQRAPEGQWDHDLYEEGASVAPL-RPNTGIETGSKLFISNLDFG 345
              + +APE  W HD++ + +      R + GIETG+KL+ISNLD+G
Sbjct: 55  ---SAKAPESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYG 98


>tr|B3H4K4|B3H4K4_ARATH Uncharacterized protein At5g59950.4
           OS=Arabidopsis thaliana GN=At5g59950 PE=4 SV=1
          Length = 211

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
 Frame = +1

Query: 28  MTSALDMALDDLIKTNKQXXXXXXXXXXXXXXXXXXXXXXXXPIRKNXXXXXXXXXXXXX 207
           M++ LDM+LDD+I  N++                        P RK+             
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQ------ 54

Query: 208 XXXAQRAPEGQWDHDLYEEGASVAPL-RPNTGIETGSKLFISNLDFG 345
              + +APE  W HD++ + +      R + GIETG+KL+ISNLD+G
Sbjct: 55  ---SAKAPESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISNLDYG 98


>tr|A9S944|A9S944_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_57202 PE=4 SV=1
          Length = 274

 Score = 50.4 bits (119), Expect = 4e-05
 Identities = 39/112 (34%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
 Frame = +1

Query: 28  MTSALDMALDDLIKTNKQXXXXXXXXXXXXXXXXXXXXXXXXPIRKNXXXXXXXXXXXXX 207
           MTSALDM+LDDLIK+NK                            +              
Sbjct: 1   MTSALDMSLDDLIKSNKTATHGGRGGGRGAAAPVPRRVGATAAAEEGYPDSRMSGPARRQ 60

Query: 208 XXXA---QRAPEGQWDHDLYEEGASV--APLRPNTG-IETGSKLFISNLDFG 345
              A   +RA +  W HD+YE  A    A +R   G IETG+KL+ISNLD G
Sbjct: 61  VTRATPVRRAMDSPWQHDMYENFAPAPSASVRGTGGNIETGTKLYISNLDHG 112


>tr|Q8LCA6|Q8LCA6_ARATH Transcriptional coactivator-like protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 243

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
 Frame = +1

Query: 28  MTSALDMALDDLIKTNKQXXXXXXXXXXXXXXXXXXXXXXXXPIRKNXXXXXXXXXXXXX 207
           M++ LDM+LDD+I  N++                        P RK+             
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQ------ 54

Query: 208 XXXAQRAPEGQWDHDLYEEGASVAPL-RPNTGIETGSKLFISNLDFG 345
              + +APE  W HD++ + +      R + GIETG+KL+IS LD+G
Sbjct: 55  ---SAKAPESTWGHDMFSDRSEDHRSGRSSAGIETGTKLYISXLDYG 98


>tr|Q1MSH0|Q1MSH0_NICBE ALY protein OS=Nicotiana benthamiana GN=aly
           PE=2 SV=1
          Length = 246

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +1

Query: 226 APEGQWDHDLYEEGASVAPLRPN----TGIETGSKLFISNLDFG 345
           APE  WDHD++ E A   P        +GIETG KL ISNLD+G
Sbjct: 60  APESTWDHDMFAEHAPAYPAARGAGGISGIETGIKLLISNLDYG 103