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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948445
Clone id TST38A01NGRL0003_F09
Library
Length 231
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_F09. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CTTATTTTGATGCGGCGTGTGTGTGTGTGTGTGTTATCCTAATTCCCTATGGAGTATCAG
GTCTTGAGTTCAAGACTCGTTGGATAGATCTTTTGAGGTCCCTCGGGAATGTTCCTACGA
TGTTAAAAACTCTCTCTAGCCCCTCCCCCTGTATAGACCAAAGCCATAACATTGTTGGTA
ATGTTGTGTCCTATGACTCCTTAACTGTCAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q32M07
Definition sp|Q32M07|CI098_MOUSE Putative adenylate kinase-like protein C9orf98 homolog OS=Mus musculus
Align length 42
Score (bit) 32.3
E-value 0.75
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948445|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_F09, 5'
         (209 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q32M07|CI098_MOUSE Putative adenylate kinase-like protein C9o...    32   0.75 
sp|Q68FP8|CI098_RAT Putative adenylate kinase-like protein C9orf...    32   1.3  
sp|Q54L80|GTAQ_DICDI GATA zinc finger domain-containing protein ...    29   6.4  
sp|Q9YIB9|HIF1A_CHICK Hypoxia-inducible factor 1 alpha OS=Gallus...    29   8.3  
sp|P34478|GEI13_CAEEL Gex-3-interacting protein 13 OS=Caenorhabd...    29   8.3  

>sp|Q32M07|CI098_MOUSE Putative adenylate kinase-like protein
           C9orf98 homolog OS=Mus musculus PE=2 SV=1
          Length = 479

 Score = 32.3 bits (72), Expect = 0.75
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = +3

Query: 45  PYGVSGLEFKTRWID----LLRSLGNVPTMLKTLSSPSPCID 158
           P G+S +E   + ++    ++R L + P +LKT+SS  PC+D
Sbjct: 207 PEGISEIETAKKLLEYHRHIIRILPSYPKILKTISSDQPCVD 248


>sp|Q68FP8|CI098_RAT Putative adenylate kinase-like protein C9orf98
           homolog OS=Rattus norvegicus PE=2 SV=1
          Length = 479

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 4/45 (8%)
 Frame = +3

Query: 36  ILIPYGVSGLEFKTRWID----LLRSLGNVPTMLKTLSSPSPCID 158
           ++ P G+S ++   + ++    ++R L + P +LKT+SS  PC+D
Sbjct: 204 LIQPEGISEIDTAKKLLEYHRHIIRILPSYPKILKTISSDQPCVD 248


>sp|Q54L80|GTAQ_DICDI GATA zinc finger domain-containing protein 17
           OS=Dictyostelium discoideum GN=gtaQ PE=4 SV=1
          Length = 356

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 72  KTRWIDLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVSYDSLT 206
           KT+ I   ++ GNV T + T ++P    D   NI+G   + D +T
Sbjct: 245 KTKGISKTKTKGNVSTAITTTTTPITTTDS--NIIGTTTTTDDIT 287


>sp|Q9YIB9|HIF1A_CHICK Hypoxia-inducible factor 1 alpha OS=Gallus
           gallus GN=HIF1A PE=2 SV=2
          Length = 811

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 30  CVILIPYGVSGLEFKTRWIDLLRSLGNVPTMLKTLSSP 143
           C++ + Y +SG+  K    DL+ SLG    MLK + SP
Sbjct: 334 CIVCVNYVLSGIVQK----DLIFSLGQTECMLKPVESP 367


>sp|P34478|GEI13_CAEEL Gex-3-interacting protein 13
           OS=Caenorhabditis elegans GN=gei-13 PE=1 SV=2
          Length = 691

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 60  GLEFKTRWIDLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVS 191
           G +FKT  ID +R  GNV T     SS  P   ++  +V  ++S
Sbjct: 490 GNKFKTELIDYIRGGGNVTTPPTPNSSSFPSTPKTPQLVQQIIS 533
tr_hit_id A6AYY0
Definition tr|A6AYY0|A6AYY0_VIBPA Binding-protein-dependent transport systems inner membrane component OS=Vibrio parahaemolyticus AQ3810
Align length 59
Score (bit) 34.3
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948445|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_F09, 5'
         (209 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6AYY0|A6AYY0_VIBPA Binding-protein-dependent transport syste...    34   3.1  
tr|Q87Q13|Q87Q13_VIBPA Putative permease of ABC transporter OS=V...    33   5.4  
tr|Q1VDQ2|Q1VDQ2_VIBAL Putative permease of ABC transporter OS=V...    33   7.0  
tr|A7K0C8|A7K0C8_9VIBR ABC-type spermidine/putrescine transport ...    33   7.0  

>tr|A6AYY0|A6AYY0_VIBPA Binding-protein-dependent transport systems
           inner membrane component OS=Vibrio parahaemolyticus
           AQ3810 GN=A79_6211 PE=3 SV=1
          Length = 426

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +3

Query: 15  ACVCVCVILIPYGVSGLEFKTRWIDLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVS 191
           A + + V+L+P+  S L   T WI LL++ G +  +L      S  I   HN  G VVS
Sbjct: 240 ANLLLIVVLLPFWTSLLVRTTSWIVLLQNQGVINDLLMWSGLTSERIQMIHNTFGTVVS 298


>tr|Q87Q13|Q87Q13_VIBPA Putative permease of ABC transporter
           OS=Vibrio parahaemolyticus GN=VP1337 PE=3 SV=1
          Length = 426

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/59 (35%), Positives = 30/59 (50%)
 Frame = +3

Query: 15  ACVCVCVILIPYGVSGLEFKTRWIDLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVS 191
           A + + V+L+P+  S L   T WI LL++ G +  +L      S  I   HN  G VVS
Sbjct: 240 ANLLLIVVLLPFWTSLLVRTTSWIVLLQNQGVINDLLIWSGLTSERIQMIHNTFGTVVS 298


>tr|Q1VDQ2|Q1VDQ2_VIBAL Putative permease of ABC transporter
           OS=Vibrio alginolyticus 12G01 GN=V12G01_19277 PE=3 SV=1
          Length = 426

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +3

Query: 15  ACVCVCVILIPYGVSGLEFKTRWIDLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVS 191
           A + + ++L+P+  S L   T WI LL++ G +  +L      S  I   HN  G VVS
Sbjct: 240 ANLLLIIVLLPFWTSLLVRTTSWIVLLQNQGVINDLLIWSGFTSERIQMIHNTFGTVVS 298


>tr|A7K0C8|A7K0C8_9VIBR ABC-type spermidine/putrescine transport
           system, permease component I OS=Vibrio sp. Ex25
           GN=VEx25_1079 PE=3 SV=1
          Length = 426

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +3

Query: 15  ACVCVCVILIPYGVSGLEFKTRWIDLLRSLGNVPTMLKTLSSPSPCIDQSHNIVGNVVS 191
           A + + ++L+P+  S L   T WI LL++ G +  +L      S  I   HN  G VVS
Sbjct: 240 ANLLLIIVLLPFWTSLLVRTTSWIVLLQNQGVINDLLIWSGFTSERIQMIHNTFGTVVS 298