DK948480
Clone id TST38A01NGRL0003_G21
Library
Length 647
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_G21. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
GTGGTGCTGATTACGGCAATTGTTACGGCGTGACGTTGGAGAGACGTTGGACCTCATTGT
TGGCCGGCCATGGCGACATCCTTTTCTGCGTCAGACACTACCTTTCTGCTCCATCATCAC
ACGTCTACAGATACTAACATCACGCGACCTCCCTTGCCGCCACGCAGAGGCGCGTTTGTA
TCTTTTCGGCCTCTTCCTAAGGCGCGAGCTCGCCACAGCCAACTTCGCTGCAGAAGCTTG
CGAGTATATGCCTTGGCCAGTGCCAGCAGTAACAACAATAACAACAGCTTGGATGATCTT
GCAGCCCGCCTTGTGGATGCCGCTCGTTCTCTCAGCCAAAGAACAGGCCACATAATCGAA
TCTGCTTGGCTTCAAACGGTTAAGTTTGTAGAGTCTCAGAATTTCCAGGGAAAGTTTGAG
CAGGGGTTCAATGCTGCTAATCGCAAGGTTGAGGAGTTTACCTACGATGCCCGCAAAGGT
GCCAAGGATTTTGATCGCCGGTTTAGGGTTTCAGAACGTGCACAAGAAATGAGTGATTTT
GCTAGTCAGCAAGTGAAGAACTTTGATCAGCAGCTTGGTCTGGTGCAGAAATTTCGAAAT
TTCTCTTCTGATCTTCAGAGAAATTGGCCTAGGTACAGACGGCAGCT
■■Homology search results ■■ -
sp_hit_id P49816
Definition sp|P49816|TSC2_RAT Tuberin OS=Rattus norvegicus
Align length 147
Score (bit) 35.0
E-value 0.32
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK948480|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_G21, 5'
(632 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P49816|TSC2_RAT Tuberin OS=Rattus norvegicus GN=Tsc2 PE=1 SV=1 35 0.32
sp|O35589|NAB1_MESAU NGFI-A-binding protein 1 OS=Mesocricetus au... 33 0.93
sp|Q62722|NAB1_RAT NGFI-A-binding protein 1 OS=Rattus norvegicus... 33 1.6
sp|Q61122|NAB1_MOUSE NGFI-A-binding protein 1 OS=Mus musculus GN... 33 1.6
sp|P25943|VT2_RFVKA Tumor necrosis factor soluble receptor OS=Ra... 32 2.7
sp|Q4A6S2|SECA_MYCS5 Protein translocase subunit secA OS=Mycopla... 30 7.9
sp|Q6KIK4|SECA_MYCMO Protein translocase subunit secA OS=Mycopla... 30 7.9
sp|P35724|MNR2_YEAST Manganese resistance protein MNR2 OS=Saccha... 30 7.9

>sp|P49816|TSC2_RAT Tuberin OS=Rattus norvegicus GN=Tsc2 PE=1 SV=1
Length = 1809

Score = 35.0 bits (79), Expect = 0.32
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 6/147 (4%)
Frame = -3

Query: 558 LLIKVLHLLTSKITHFLCTF*NPKPAIKILGTFAGIVGKLLNLAISSIEPLLKLSLEILR 379
++IK L +L K+TH T P ++ L T A + N A + +SL
Sbjct: 818 IIIKALPVLVVKLTHISATASMAIPLLEFLSTLARLPHLYRNFAAEQYASVFAISLPYTN 877

Query: 378 LYKLNRLKPSRFDYVACSLAERTSGIHKAGCKII--QAVVIVVTAGTGQGIY----SQAS 217
K N+ Y+ C LA + C++ + V +T G +
Sbjct: 878 PSKFNQ-------YIVC-LAHHVIAMWFIRCRLPFRKDFVPYITKGLRSNVLLSFDDTPE 929

Query: 216 AAKLAVASSRLRKRPKRYKRASAWRQG 136
K S+ L +RPK + A A +QG
Sbjct: 930 KDKFRARSTSLNERPKSLRIARAPKQG 956


>sp|O35589|NAB1_MESAU NGFI-A-binding protein 1 OS=Mesocricetus
auratus GN=NAB1 PE=2 SV=1
Length = 485

Score = 33.5 bits (75), Expect = 0.93
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = -3

Query: 414 EPLLKLSLEILRLYKLNRLKPSRFDYVACSLAERTSGIHKAGCKIIQAVVIVVTAGTGQG 235
+PL L + + +YKL + P+ ++C+ ER S + KI + GQG
Sbjct: 84 QPLTSLPVSSIPIYKLPKGSPTWLG-ISCNSYERNSSAREPHLKIPKCAATTCVQSLGQG 142

Query: 234 IYSQASAAKLAVASSRL 184
S A +V+ SRL
Sbjct: 143 KSEVGSLAVQSVSESRL 159


>sp|Q62722|NAB1_RAT NGFI-A-binding protein 1 OS=Rattus norvegicus
GN=Nab1 PE=2 SV=2
Length = 485

Score = 32.7 bits (73), Expect = 1.6
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = -3

Query: 414 EPLLKLSLEILRLYKLNRLKPSRFDYVACSLAERTSGIHKAGCKIIQAVVIVVTAGTGQG 235
+PL L + + +YKL P+ ++C+ ER+S + K+ + GQG
Sbjct: 84 QPLTSLPVSSIPIYKLPEGSPTWLG-ISCNSYERSSSAREPHLKVPKCAATTCVQSLGQG 142

Query: 234 IYSQASAAKLAVASSRL 184
S A +V+ SRL
Sbjct: 143 KSEVGSLALQSVSESRL 159


>sp|Q61122|NAB1_MOUSE NGFI-A-binding protein 1 OS=Mus musculus
GN=Nab1 PE=1 SV=1
Length = 486

Score = 32.7 bits (73), Expect = 1.6
Identities = 22/77 (28%), Positives = 35/77 (45%)
Frame = -3

Query: 414 EPLLKLSLEILRLYKLNRLKPSRFDYVACSLAERTSGIHKAGCKIIQAVVIVVTAGTGQG 235
+PL L + + +YKL P+ ++C+ ER+S + KI + GQG
Sbjct: 84 QPLTSLPVSSIPIYKLPEGSPTWLG-ISCNSYERSSSSREPHLKIPKCAATTCVQSLGQG 142

Query: 234 IYSQASAAKLAVASSRL 184
S A +V+ SRL
Sbjct: 143 KSEVGSLALQSVSDSRL 159


>sp|P25943|VT2_RFVKA Tumor necrosis factor soluble receptor
OS=Rabbit fibroma virus (strain Kasza) GN=T2 PE=4 SV=1
Length = 325

Score = 32.0 bits (71), Expect = 2.7
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3

Query: 282 SCSPPC-GCRSFSQPKNRPHNRICLASNG*VC 374
SC PC G S SQP +R H+R+C S G C
Sbjct: 81 SCRGPCTGHLSESQPCDRTHDRVCNCSTGNYC 112


>sp|Q4A6S2|SECA_MYCS5 Protein translocase subunit secA OS=Mycoplasma
synoviae (strain 53) GN=secA PE=3 SV=2
Length = 1093

Score = 30.4 bits (67), Expect = 7.9
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Frame = +1

Query: 376 ESQNFQGKFEQGFNAANRKVEEFTYDARKGAKDFD------RRFRVSER-----AQEMSD 522
E N Q +F FN A +K+E F YD+RK ++D R S+R + E +
Sbjct: 565 EITNKQLRF--AFNNAQKKIEGFNYDSRKSVLNYDDVIRQQRDLIYSQRDLLLISNEFEE 622

Query: 523 FASQQVKNFDQQLGLVQ--KFRNFSSDLQR 606
+ +K F + L ++ K ++ + D Q+
Sbjct: 623 IIRRMIKVFVKNLVAIEDHKLKSGAYDYQK 652


>sp|Q6KIK4|SECA_MYCMO Protein translocase subunit secA OS=Mycoplasma
mobile GN=secA PE=3 SV=1
Length = 854

Score = 30.4 bits (67), Expect = 7.9
Identities = 12/48 (25%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1

Query: 340 IESAWLQT-VKFVESQNFQGKFEQGFNAANRKVEEFTYDARKGAKDFD 480
++ W + ++ +++ + ++ F+ A RK+E F YD RK ++D
Sbjct: 546 LQDKWKEIFAEYKDNEIIDKQIKKAFDKAQRKIEGFNYDNRKNVLNYD 593


>sp|P35724|MNR2_YEAST Manganese resistance protein MNR2
OS=Saccharomyces cerevisiae GN=MNR2 PE=1 SV=1
Length = 969

Score = 30.4 bits (67), Expect = 7.9
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1

Query: 61 TSFSASDTTFLLHHHTSTDTNITRPPLPPRRGAFVSFRP 177
T F D+ +LH ST +I + P +GAF+ RP
Sbjct: 65 TDFDQIDSWGMLHESDSTSNDIIKSEDPSLKGAFIDHRP 103


tr_hit_id A9RYD4
Definition tr|A9RYD4|A9RYD4_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 69
Score (bit) 70.9
E-value 6.0e-11
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK948480|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_G21, 5'
(632 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RYD4|A9RYD4_PHYPA Predicted protein (Fragment) OS=Physcomit... 71 6e-11
tr|B6TRA3|B6TRA3_MAIZE Putative uncharacterized protein OS=Zea m... 67 7e-10
tr|B4FHR1|B4FHR1_MAIZE Putative uncharacterized protein OS=Zea m... 67 1e-09
tr|Q8S7Q1|Q8S7Q1_ORYSJ Putative uncharacterized protein OSJNBa00... 64 8e-09
tr|Q0IVI4|Q0IVI4_ORYSJ Os10g0569000 protein OS=Oryza sativa subs... 64 8e-09
tr|A3C7H2|A3C7H2_ORYSJ Putative uncharacterized protein OS=Oryza... 64 8e-09
tr|A2ZAE5|A2ZAE5_ORYSI Putative uncharacterized protein OS=Oryza... 64 8e-09
tr|O22164|O22164_ARATH Expressed protein (Putative uncharacteriz... 59 2e-07
tr|A7PBG8|A7PBG8_VITVI Chromosome chr16 scaffold_10, whole genom... 50 1e-04
tr|A8IYI2|A8IYI2_CHLRE Predicted protein OS=Chlamydomonas reinha... 46 0.002
tr|B8PKV5|B8PKV5_9APHY Predicted protein OS=Postia placenta Mad-... 38 0.44
tr|B8A8C5|B8A8C5_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.58
tr|A2ZX28|A2ZX28_ORYSJ Putative uncharacterized protein OS=Oryza... 38 0.58
tr|Q1YP49|Q1YP49_9GAMM Extragenic suppressor protein SuhB OS=gam... 36 1.7
tr|Q4L9G8|Q4L9G8_STAHJ CapK protein OS=Staphylococcus haemolytic... 35 3.7
tr|Q22715|Q22715_CAEEL Protein T24B8.4, partially confirmed by t... 35 3.7
tr|B8P5T9|B8P5T9_9APHY Predicted protein OS=Postia placenta Mad-... 35 4.9
tr|A1L1D1|A1L1D1_XENTR LOC100036715 protein (Fragment) OS=Xenopu... 34 6.4
tr|Q6C8R0|Q6C8R0_YARLI YALI0D17710p OS=Yarrowia lipolytica GN=YA... 34 6.4
tr|B8P0Q4|B8P0Q4_9APHY Predicted protein OS=Postia placenta Mad-... 34 6.4
tr|Q6P100|Q6P100_DANRE SMEK homolog 2, suppressor of mek1 (Dicty... 34 8.3
tr|B6HNK7|B6HNK7_PENCH Pc21g05120 protein OS=Penicillium chrysog... 34 8.3

>tr|A9RYD4|A9RYD4_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_121251 PE=4 SV=1
Length = 189

Score = 70.9 bits (172), Expect = 6e-11
Identities = 31/69 (44%), Positives = 49/69 (71%)
Frame = +1

Query: 424 NRKVEEFTYDARKGAKDFDRRFRVSERAQEMSDFASQQVKNFDQQLGLVQKFRNFSSDLQ 603
N K EEF YD K +DR++RV+E+AQ++ ++A++Q +N D+Q G+ QK RN ++D +
Sbjct: 8 NLKFEEFAYDFNKQLGKWDRQYRVTEKAQQVKEYATEQAQNVDRQFGIRQKARNATTDFR 67

Query: 604 RNWPRYRRQ 630
+P YRRQ
Sbjct: 68 LKFPTYRRQ 76


>tr|B6TRA3|B6TRA3_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 232

Score = 67.4 bits (163), Expect = 7e-10
Identities = 30/82 (36%), Positives = 47/82 (57%)
Frame = +1

Query: 385 NFQGKFEQGFNAANRKVEEFTYDARKGAKDFDRRFRVSERAQEMSDFASQQVKNFDQQLG 564
+F G + + AN E F ++AR+ A+ D RF +S R + S A + D + G
Sbjct: 39 DFDGFVRRAWQGANAGAERFAFEARQAAQRLDSRFSISRRLADASRAARARAVEIDAEFG 98

Query: 565 LVQKFRNFSSDLQRNWPRYRRQ 630
+ +++R+FS D RNWPRYRR+
Sbjct: 99 IGRRWRSFSVDFSRNWPRYRRE 120


>tr|B4FHR1|B4FHR1_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 183

Score = 66.6 bits (161), Expect = 1e-09
Identities = 30/81 (37%), Positives = 46/81 (56%)
Frame = +1

Query: 385 NFQGKFEQGFNAANRKVEEFTYDARKGAKDFDRRFRVSERAQEMSDFASQQVKNFDQQLG 564
+F G + + AN E F ++AR+ A+ D RF +S R + S A + D + G
Sbjct: 40 DFDGFVRRAWQGANAGAERFAFEARQAAQRLDSRFSISRRLADASRAARARAVEIDAEFG 99

Query: 565 LVQKFRNFSSDLQRNWPRYRR 627
+ +++R+FS D RNWPRYRR
Sbjct: 100 IGRRWRSFSVDFSRNWPRYRR 120


>tr|Q8S7Q1|Q8S7Q1_ORYSJ Putative uncharacterized protein
OSJNBa0095C07.2 (Expressed protein) OS=Oryza sativa
subsp. japonica GN=OSJNBa0095C07.2 PE=4 SV=1
Length = 237

Score = 63.9 bits (154), Expect = 8e-09
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = +1

Query: 385 NFQGKFEQGFNAANRKVEEFTYDARKGAKDFDRRFRVSERAQEMSDFASQQVKNFDQQLG 564
+F G + + AN E ++ R+ A+ D RF +S R E + A + D +LG
Sbjct: 44 DFDGFVRRAWRGANAGAERLAFEVRQTAQRLDGRFSISRRLAEAARAARARAVEIDAELG 103

Query: 565 LVQKFRNFSSDLQRNWPRYRRQ 630
+ +++R+FS D RNWPRYRR+
Sbjct: 104 IGRRWRSFSVDFSRNWPRYRRE 125


>tr|Q0IVI4|Q0IVI4_ORYSJ Os10g0569000 protein OS=Oryza sativa subsp.
japonica GN=Os10g0569000 PE=4 SV=1
Length = 195

Score = 63.9 bits (154), Expect = 8e-09
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = +1

Query: 385 NFQGKFEQGFNAANRKVEEFTYDARKGAKDFDRRFRVSERAQEMSDFASQQVKNFDQQLG 564
+F G + + AN E ++ R+ A+ D RF +S R E + A + D +LG
Sbjct: 44 DFDGFVRRAWRGANAGAERLAFEVRQTAQRLDGRFSISRRLAEAARAARARAVEIDAELG 103

Query: 565 LVQKFRNFSSDLQRNWPRYRRQ 630
+ +++R+FS D RNWPRYRR+
Sbjct: 104 IGRRWRSFSVDFSRNWPRYRRE 125


>tr|A3C7H2|A3C7H2_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_031244 PE=4 SV=1
Length = 143

Score = 63.9 bits (154), Expect = 8e-09
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = +1

Query: 385 NFQGKFEQGFNAANRKVEEFTYDARKGAKDFDRRFRVSERAQEMSDFASQQVKNFDQQLG 564
+F G + + AN E ++ R+ A+ D RF +S R E + A + D +LG
Sbjct: 44 DFDGFVRRAWRGANAGAERLAFEVRQTAQRLDGRFSISRRLAEAARAARARAVEIDAELG 103

Query: 565 LVQKFRNFSSDLQRNWPRYRRQ 630
+ +++R+FS D RNWPRYRR+
Sbjct: 104 IGRRWRSFSVDFSRNWPRYRRE 125


>tr|A2ZAE5|A2ZAE5_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_34714 PE=4 SV=1
Length = 243

Score = 63.9 bits (154), Expect = 8e-09
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = +1

Query: 385 NFQGKFEQGFNAANRKVEEFTYDARKGAKDFDRRFRVSERAQEMSDFASQQVKNFDQQLG 564
+F G + + AN E ++ R+ A+ D RF +S R E + A + D +LG
Sbjct: 47 DFDGFVRRAWRGANAGAERLAFEVRQTAQRLDGRFSISRRLAEAARAARARAVEIDAELG 106

Query: 565 LVQKFRNFSSDLQRNWPRYRRQ 630
+ +++R+FS D RNWPRYRR+
Sbjct: 107 IGRRWRSFSVDFSRNWPRYRRE 128


>tr|O22164|O22164_ARATH Expressed protein (Putative uncharacterized
protein) (Putative uncharacterized protein unannotated
coding sequence from BAC T13E15) OS=Arabidopsis thaliana
GN=At2g44870 PE=2 SV=2
Length = 248

Score = 58.9 bits (141), Expect = 2e-07
Identities = 24/77 (31%), Positives = 46/77 (59%)
Frame = +1

Query: 400 FEQGFNAANRKVEEFTYDARKGAKDFDRRFRVSERAQEMSDFASQQVKNFDQQLGLVQKF 579
+ + +AN E+F ++A+K A+ DR++ VS R + A+ + + D++ G+ +
Sbjct: 48 WRDAWRSANDGFEQFVFEAKKTAERIDRQYAVSRRFSSAASSAADRAREIDREFGITPRV 107

Query: 580 RNFSSDLQRNWPRYRRQ 630
R S+D RN+P+YR+Q
Sbjct: 108 RTVSADFSRNFPKYRKQ 124


>tr|A7PBG8|A7PBG8_VITVI Chromosome chr16 scaffold_10, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00014089001
PE=4 SV=1
Length = 302

Score = 50.1 bits (118), Expect = 1e-04
Identities = 23/77 (29%), Positives = 42/77 (54%)
Frame = +1

Query: 400 FEQGFNAANRKVEEFTYDARKGAKDFDRRFRVSERAQEMSDFASQQVKNFDQQLGLVQKF 579
+ + +AN E ++A+K A+ +R++ VS R E A + D++ + +++
Sbjct: 54 WRDAWRSANDGFELLIFEAKKTAERINRQYAVSRRFSEAVGSAGDWAREVDREFEIGRRW 113

Query: 580 RNFSSDLQRNWPRYRRQ 630
R + D RNWPRYR+Q
Sbjct: 114 RTVTLDFGRNWPRYRKQ 130


>tr|A8IYI2|A8IYI2_CHLRE Predicted protein OS=Chlamydomonas
reinhardtii GN=CHLREDRAFT_157887 PE=4 SV=1
Length = 181

Score = 45.8 bits (107), Expect = 0.002
Identities = 23/87 (26%), Positives = 39/87 (44%)
Frame = +1

Query: 370 FVESQNFQGKFEQGFNAANRKVEEFTYDARKGAKDFDRRFRVSERAQEMSDFASQQVKNF 549
F Q + K Q E+ AR+ D + +S + + + A + ++
Sbjct: 67 FAREQELEKKANQAMKKGGEVFEQAKDKARRVYVRLDSEYDISSKTAKAAKKAGEAARDI 126

Query: 550 DQQLGLVQKFRNFSSDLQRNWPRYRRQ 630
DQQ GL ++FR DL R WP +++Q
Sbjct: 127 DQQYGLRRRFRAAREDLARKWPGWQKQ 153