NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948490
Clone id TST38A01NGRL0003_H07
Library
Length 662
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_H07. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GATTTACTCGGGAAGAAGCGTCCATGGCGAACTCAATTTCAATCGTCTCGCTATTTCTGT
TGATTTGTCATCTTCTGTCAACCTCCAGCGCGTCTCCGACAGCCCCTGCATTTATCTGGT
CGAATCACAGATTTGCTGGTTTGCATACACAGGAAGCGGTTGATTATCATGTTCTCACCC
CAAAAGCTTTAGTCAATACACTTATGCAAAAGCTTGAATGGTCTAGCTTGCTGTGTAATT
CTGATTCTGGAGAAAGTGAAAAGTTGGATACAGTGGTGGCATTTGTTGGCAATGAGTTTT
ACTCAGAAGATGTTGCACACGATGCAAGGGTAGACAGCTCACCTGTGTTAAGAATATTGA
AGGAGCATTTCATGTCTTCTAGGTACTCTTTGGCATTTCCCTATGTTTCAGTCACTACAG
GAGGAGGGGGAATTCTGAACATACTGGTATCCTCTATCAAGGATAGCTGCAACTTGAAAT
CTAGACCTGGAAAGACATTGATCGTGGGATCATGTGTAAAAGGAACATTTGATCCAAACT
CACCAATCTTGACGGAGGGTATTGAACTGGTTGACACAGTTGAAGATGTGGAGGATTTTA
TATCCAGACGAAAAACAAGTCGAAAATCCAGTGAAACAGATGTCATCCTCACATGCCCAG
TA
■■Homology search results ■■ -
sp_hit_id P30140
Definition sp|P30140|THIH_ECOLI Thiazole biosynthesis protein thiH OS=Escherichia coli (strain K12)
Align length 36
Score (bit) 30.8
E-value 6.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948490|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_H07, 5'
         (662 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P30140|THIH_ECOLI Thiazole biosynthesis protein thiH OS=Esche...    31   6.7  

>sp|P30140|THIH_ECOLI Thiazole biosynthesis protein thiH
           OS=Escherichia coli (strain K12) GN=thiH PE=1 SV=3
          Length = 377

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +3

Query: 327 RVDSSPV---LRILKEHFMSSRYSLAFPYVSVTTGG 425
           RVDS  V   L  L++H+  SRYS++FP +   TGG
Sbjct: 233 RVDSYMVAEHLLWLQQHYWQSRYSVSFPRLRPCTGG 268
tr_hit_id A9NVN3
Definition tr|A9NVN3|A9NVN3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 208
Score (bit) 88.6
E-value 3.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948490|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_H07, 5'
         (662 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NVN3|A9NVN3_PICSI Putative uncharacterized protein OS=Picea...    89   3e-16
tr|A7P0C9|A7P0C9_VITVI Chromosome chr6 scaffold_3, whole genome ...    81   7e-14
tr|A5BJ31|A5BJ31_VITVI Putative uncharacterized protein OS=Vitis...    79   2e-13
tr|Q2QYD3|Q2QYD3_ORYSJ Os12g0123900 protein OS=Oryza sativa subs...    76   2e-12
tr|B8BLS9|B8BLS9_ORYSI Putative uncharacterized protein OS=Oryza...    76   2e-12
tr|A3CEI1|A3CEI1_ORYSJ Putative uncharacterized protein OS=Oryza...    76   2e-12
tr|B6THR0|B6THR0_MAIZE Putative uncharacterized protein OS=Zea m...    76   2e-12
tr|Q2RB32|Q2RB32_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    75   3e-12
tr|A2ZAZ8|A2ZAZ8_ORYSI Putative uncharacterized protein OS=Oryza...    75   3e-12
tr|B4G107|B4G107_MAIZE Putative uncharacterized protein OS=Zea m...    72   4e-11
tr|Q93WB8|Q93WB8_ARATH Putative uncharacterized protein At3g1341...    71   7e-11
tr|Q8H7I0|Q8H7I0_ARATH Putative uncharacterized protein OS=Arabi...    71   7e-11
tr|B7FKU1|B7FKU1_MEDTR Putative uncharacterized protein OS=Medic...    71   7e-11
tr|A9SHC6|A9SHC6_PHYPA Predicted protein OS=Physcomitrella paten...    70   1e-10
tr|A9RPZ5|A9RPZ5_PHYPA Predicted protein OS=Physcomitrella paten...    68   6e-10
tr|B3K6Q8|B3K6Q8_9BACI DNA-(Apurinic or apyrimidinic site) lyase...    37   1.1  
tr|Q0CH68|Q0CH68_ASPTN Phosphoribosylformylglycinamidine cyclo-l...    36   2.4  
tr|Q4UCL8|Q4UCL8_THEAN SfiI-subtelomeric related protein family ...    35   4.1  
tr|B2KBQ9|B2KBQ9_ELUMP Putative uncharacterized protein OS=Elusi...    35   5.4  
tr|A7SD69|A7SD69_NEMVE Predicted protein OS=Nematostella vectens...    35   5.4  
tr|Q2U9E0|Q2U9E0_ASPOR Glycinamide ribonucleotide synthetase OS=...    35   5.4  
tr|B8ND53|B8ND53_ASPFL Bifunctional purine biosynthetic protein ...    35   5.4  
tr|B4W4P3|B4W4P3_9CYAN Transporter, CPA2 family OS=Microcoleus c...    34   7.1  
tr|Q485M5|Q485M5_COLP3 Flagellar regulatory protein A OS=Colwell...    34   9.2  

>tr|A9NVN3|A9NVN3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 320

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 53/208 (25%), Positives = 101/208 (48%), Gaps = 3/208 (1%)
 Frame = +3

Query: 42  IVSLFLLICHLLXXXXXXXXXXXFIWSN--HRFAGLHTQEAVDYHVLTPKALVNTLMQKL 215
           ++ L +   H++           F+WSN  HR    + Q +V+Y+V++P+ L   +++  
Sbjct: 6   LLGLLVAAAHIIAASCLPTTVPAFLWSNDPHRSLSHYEQGSVNYNVISPRDLAKDVLKMA 65

Query: 216 EWSSLLCNSDSGESEKLDTVVAFVGNEFYSEDVAHDARVDSSPVLRILKEHFMSSRYSLA 395
            WS LLC+ +  E +  D  + F+GN+ +S D++     D   ++ +LK  F  S +S+A
Sbjct: 66  GWSQLLCSGEKRE-QAADVALVFIGNKLHSPDISRKRYTDLE-LIELLKASFKDSSFSMA 123

Query: 396 FPYVSVTTGGGGILNILVSSIKDSCNLKSRPGKTLIVGSC-VKGTFDPNSPILTEGIELV 572
           FPYV+++     + N L+S   ++C+   R  +   V  C V+G  +          + +
Sbjct: 124 FPYVTLSEDSEPLANSLLSGFVENCDHGFRNNEIAFVEPCFVEGANN----------KKL 173

Query: 573 DTVEDVEDFIXXXXXXXXXXETDVILTC 656
           + +E V D++           TD+I  C
Sbjct: 174 ENLEAVNDYVSARKEIRMRGATDLIFIC 201


>tr|A7P0C9|A7P0C9_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024859001
           PE=4 SV=1
          Length = 315

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 52/208 (25%), Positives = 99/208 (47%), Gaps = 1/208 (0%)
 Frame = +3

Query: 36  ISIVSLFLLICHLLXXXXXXXXXXXFIWSNHRFAGLHTQEAVDYHVLTPKALVNTLMQKL 215
           +S++ + L++  +            F+WS+H+F     +EAV+Y  L PK L  +++ + 
Sbjct: 6   VSLLMVLLVVSRVPYRTALPSTVPAFLWSHHQF---EMKEAVNYQTLYPKDLAKSVVSEG 62

Query: 216 EWSSLLCNSDSGESEKLDTVVAFVGNEFYSEDVAHDARVDSSPVLRILKEHFMSSRYSLA 395
            WS+LLC+ +  + + +D  + FVG E  S D++     D + ++ +LK  F  S +S+A
Sbjct: 63  GWSNLLCSGEK-DQQPVDLALVFVGRELSSLDISGSKHADPA-LVDLLKVSFARSNFSMA 120

Query: 396 FPYVSVTTGGGGILNILVSSIKDSCNLKSRPGKTLIVGSC-VKGTFDPNSPILTEGIELV 572
           FPYV+V+     + N L+S   ++C           + SC V+G             + +
Sbjct: 121 FPYVAVSEEKEAMENSLISGFTETCGHDLGVSNVAFLESCSVEG----------GNFKKL 170

Query: 573 DTVEDVEDFIXXXXXXXXXXETDVILTC 656
             +  V D++           TD+++ C
Sbjct: 171 ADLHSVHDYLVSRRKMRPVGPTDLVMFC 198


>tr|A5BJ31|A5BJ31_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041203 PE=4 SV=1
          Length = 315

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 1/208 (0%)
 Frame = +3

Query: 36  ISIVSLFLLICHLLXXXXXXXXXXXFIWSNHRFAGLHTQEAVDYHVLTPKALVNTLMQKL 215
           +S++ + L++  +            F+WS+H+      +EAV+Y  L+PK L  +++ + 
Sbjct: 6   VSLLMVLLVVSRVPYRTALPSTVPAFLWSHHQX---EMKEAVNYQTLSPKDLAKSVVSEG 62

Query: 216 EWSSLLCNSDSGESEKLDTVVAFVGNEFYSEDVAHDARVDSSPVLRILKEHFMSSRYSLA 395
            WS+LLC+ +  + + +D  + FVG E  S D++     D + ++ +LK  F  S +S+A
Sbjct: 63  GWSNLLCSGEK-DQQPVDLALVFVGRELSSLDISGSKHADPA-LVDLLKVSFARSNFSMA 120

Query: 396 FPYVSVTTGGGGILNILVSSIKDSCNLKSRPGKTLIVGSC-VKGTFDPNSPILTEGIELV 572
           FPYV+V+     + N L+S   ++C           + SC V+G             + +
Sbjct: 121 FPYVAVSEEKEAMENSLISGFTETCGHDLGVSNVAFLESCSVEG----------GNFKKL 170

Query: 573 DTVEDVEDFIXXXXXXXXXXETDVILTC 656
             +  V D++           TD+++ C
Sbjct: 171 ADLHSVHDYLVSRRKMRPVGPTDLVMFC 198


>tr|Q2QYD3|Q2QYD3_ORYSJ Os12g0123900 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0123900 PE=2 SV=1
          Length = 312

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 39/123 (31%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
 Frame = +3

Query: 111 FIWS--NHRFAGLHTQEAVDYHVLTPKALVNTLMQKLEWSSLLCNSDSGESEKLDTVVAF 284
           F+W+  N+ F+   T+E V Y  ++PK+LV +++++  WS+L+C+ +   ++ +D  V F
Sbjct: 29  FLWAPNNYGFSSDETKEMVYYQTVSPKSLVKSVLEEGGWSNLVCSRED-HAKSVDVAVLF 87

Query: 285 VGNEFYSEDVAHDARVDSSPVLRILKEHFMSSRYSLAFPYVSVTTGGGGILNILVSSIKD 464
           +G++  S D++ + + DS+ ++ +LK  F SS +S+AFPYV++ +    +   L+S   +
Sbjct: 88  LGSKLQSSDISKEKQADST-LVDMLKNSFASSEFSMAFPYVAM-SDDDKLEKSLLSGFAE 145

Query: 465 SCN 473
           +CN
Sbjct: 146 NCN 148


>tr|B8BLS9|B8BLS9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37308 PE=4 SV=1
          Length = 312

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 39/123 (31%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
 Frame = +3

Query: 111 FIWS--NHRFAGLHTQEAVDYHVLTPKALVNTLMQKLEWSSLLCNSDSGESEKLDTVVAF 284
           F+W+  N+ F+   T+E V Y  ++PK+LV +++++  WS+L+C+ +   ++ +D  V F
Sbjct: 29  FLWAPNNYGFSSDETKEMVYYQTVSPKSLVKSVLEEGGWSNLVCSRED-HAKSVDVAVLF 87

Query: 285 VGNEFYSEDVAHDARVDSSPVLRILKEHFMSSRYSLAFPYVSVTTGGGGILNILVSSIKD 464
           +G++  S D++ + + DS+ ++ +LK  F SS +S+AFPYV++ +    +   L+S   +
Sbjct: 88  LGSKLQSSDISKEKQADST-LVDMLKNSFASSEFSMAFPYVAM-SDDDKLEKSLLSGFAE 145

Query: 465 SCN 473
           +CN
Sbjct: 146 NCN 148


>tr|A3CEI1|A3CEI1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_033703 PE=4 SV=1
          Length = 295

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 39/123 (31%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
 Frame = +3

Query: 111 FIWS--NHRFAGLHTQEAVDYHVLTPKALVNTLMQKLEWSSLLCNSDSGESEKLDTVVAF 284
           F+W+  N+ F+   T+E V Y  ++PK+LV +++++  WS+L+C+ +   ++ +D  V F
Sbjct: 29  FLWAPNNYGFSSDETKEMVYYQTVSPKSLVKSVLEEGGWSNLVCSRED-HAKSVDVAVLF 87

Query: 285 VGNEFYSEDVAHDARVDSSPVLRILKEHFMSSRYSLAFPYVSVTTGGGGILNILVSSIKD 464
           +G++  S D++ + + DS+ ++ +LK  F SS +S+AFPYV++ +    +   L+S   +
Sbjct: 88  LGSKLQSSDISKEKQADST-LVDMLKNSFASSEFSMAFPYVAM-SDDDKLEKSLLSGFAE 145

Query: 465 SCN 473
           +CN
Sbjct: 146 NCN 148


>tr|B6THR0|B6THR0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 318

 Score = 75.9 bits (185), Expect = 2e-12
 Identities = 42/150 (28%), Positives = 84/150 (56%)
 Frame = +3

Query: 24  MANSISIVSLFLLICHLLXXXXXXXXXXXFIWSNHRFAGLHTQEAVDYHVLTPKALVNTL 203
           MA + ++++LFL+   +            +   N+ F+    +E V Y  ++PK+L  ++
Sbjct: 1   MAAAWAVLALFLVAAQVAAAAPVTAPAFLWAPKNYGFSSDDAKEVVHYQTISPKSLAKSV 60

Query: 204 MQKLEWSSLLCNSDSGESEKLDTVVAFVGNEFYSEDVAHDARVDSSPVLRILKEHFMSSR 383
           +++  WS+ +C+ +  ++  +D  + F+G++  S D++ D +VD + +   LK  F  S 
Sbjct: 61  LEEGGWSNFMCSREDTQN-NVDVAIVFIGSKLQSSDISKDKQVDPA-LADTLKLSFTRSE 118

Query: 384 YSLAFPYVSVTTGGGGILNILVSSIKDSCN 473
           +S+AFPYVS TT    + + L+SS  ++CN
Sbjct: 119 FSMAFPYVS-TTVDERLEDSLLSSFAENCN 147


>tr|Q2RB32|Q2RB32_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica GN=Os11g0127700 PE=4 SV=1
          Length = 312

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 38/123 (30%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
 Frame = +3

Query: 111 FIWS--NHRFAGLHTQEAVDYHVLTPKALVNTLMQKLEWSSLLCNSDSGESEKLDTVVAF 284
           F+W+  N+ F+    +E V Y  ++PK+LV +++++  WS+L+C+ +   ++ +D  V F
Sbjct: 29  FLWAPKNYGFSSDEAKEIVHYQTVSPKSLVKSVLEEGGWSNLVCSRED-HAKSVDVAVLF 87

Query: 285 VGNEFYSEDVAHDARVDSSPVLRILKEHFMSSRYSLAFPYVSVTTGGGGILNILVSSIKD 464
           +G++  S D++ D + DS+ ++  LK  F SS +S+AFPY+++ +    +   L+S   +
Sbjct: 88  LGSKLQSSDISKDKQADST-LVDTLKNSFASSEFSMAFPYIAM-SDDDKLEKSLLSGFAE 145

Query: 465 SCN 473
           +CN
Sbjct: 146 NCN 148


>tr|A2ZAZ8|A2ZAZ8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_34938 PE=4 SV=1
          Length = 312

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 38/123 (30%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
 Frame = +3

Query: 111 FIWS--NHRFAGLHTQEAVDYHVLTPKALVNTLMQKLEWSSLLCNSDSGESEKLDTVVAF 284
           F+W+  N+ F+    +E V Y  ++PK+LV +++++  WS+L+C+ +   ++ +D  V F
Sbjct: 29  FLWAPKNYGFSSDEAKEIVHYQTVSPKSLVKSVLEEGGWSNLVCSRED-HAKSVDVAVLF 87

Query: 285 VGNEFYSEDVAHDARVDSSPVLRILKEHFMSSRYSLAFPYVSVTTGGGGILNILVSSIKD 464
           +G++  S D++ D + DS+ ++  LK  F SS +S+AFPY+++ +    +   L+S   +
Sbjct: 88  LGSKLQSSDISKDKQADST-LVDTLKNSFASSEFSMAFPYIAM-SDDDKLEKSLLSGFAE 145

Query: 465 SCN 473
           +CN
Sbjct: 146 NCN 148


>tr|B4G107|B4G107_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 315

 Score = 71.6 bits (174), Expect = 4e-11
 Identities = 48/184 (26%), Positives = 93/184 (50%), Gaps = 2/184 (1%)
 Frame = +3

Query: 111 FIWS--NHRFAGLHTQEAVDYHVLTPKALVNTLMQKLEWSSLLCNSDSGESEKLDTVVAF 284
           F+W+  N+ F     +E V Y  ++PK L  +++++  WS+ +C+ +  E + +D  + F
Sbjct: 28  FLWAPKNYGFRSDDAKEVVHYQTISPKNLAKSVLEEGGWSTFMCSREDTE-KHVDVAIVF 86

Query: 285 VGNEFYSEDVAHDARVDSSPVLRILKEHFMSSRYSLAFPYVSVTTGGGGILNILVSSIKD 464
           +G++  S D++ D +VD + +   LK  F  S +S+AFPYVS T+    +   L+S   +
Sbjct: 87  IGSKLQSSDISKDKQVDPA-LADTLKLSFTESEFSMAFPYVS-TSDDEKLEESLLSGFTE 144

Query: 465 SCNLKSRPGKTLIVGSCVKGTFDPNSPILTEGIELVDTVEDVEDFIXXXXXXXXXXETDV 644
           +C  KS  G+  I       T+     +  + ++    ++ + D +          +TDV
Sbjct: 145 NC--KSGFGRNRI-------TYTDTCAVSGQDLKTYHNMDAINDLV-VSGRTNPSGQTDV 194

Query: 645 ILTC 656
           I+ C
Sbjct: 195 IVFC 198