DK948516 |
Clone id |
TST38A01NGRL0003_I09 |
Library |
TST38 |
Length |
619 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_I09. 5' end sequence. |
Accession |
DK948516 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL708Contig1 |
Sequence |
CGGCAACTCTCTCGTCTTCTTCCATGTCTGTCTCAGTACCATCGAGGAGTTCATTCCTGG GAAGTAAAGATCAGTTTTGCTGCTCTCCTTCCATCTCCGTATCTTCCAGTAAGGTATCCG TCCCGGTCATCAGAGCCACATCACGAGTTGACAAATTCTCAAAGTCTGACATTATCGTCT CCCCCTCTATCTTGTCTGCAAATTTTTCCAAATTGGGAGAGCAGGTCAAGGCAGTGGATG AAGCAGGATGTGACTGGATTCATGTAGATGTGATGGACGGTAGGTTTGTACCAAACATCA CAATTGGACCACTGGTGGTAGATGCATTAAGGCCTGTCACTGACTTACCTCTTGATGTGC ATCTGATGATTGTTGAGCCTGAACAAAGAGTGCCGGACTTTGTGAAAGCTGGTGCGGATA TTGTTAGTGTGCATTGTGAACAGTCTTCCACGATCCATTTGCATAGGACTTTAAATCAGA TCAAGAGTTTGGGTGCTAAAGCTGGAGTAGTGCTAAACCCTGGTACCCCATTGACTGGCA TTGAGTACATTCTGGACGTTGTGGATTTGGTGCTAATCATGTCAGTGAATCCGGGATTTG GAGGGCAAAGCTTCATAGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q43843 |
Definition |
sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum |
Align length |
161 |
Score (bit) |
307.0 |
E-value |
3.0e-83 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948516|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0003_I09, 5' (619 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplasti... 307 3e-83 sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplasti... 307 3e-83 sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplasti... 304 2e-82 sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocys... 232 1e-60 sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus s... 199 7e-51 sp|P40117|RPEC_RALEH Ribulose-phosphate 3-epimerase, chromosomal... 171 3e-42 sp|Q04539|RPEP_RALEH Ribulose-phosphate 3-epimerase, plasmid OS=... 169 1e-41 sp|P45455|RPE_SERMA Ribulose-phosphate 3-epimerase OS=Serratia m... 161 3e-39 sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase OS=Rhodobacte... 161 3e-39 sp|P57603|RPE_BUCAI Ribulose-phosphate 3-epimerase OS=Buchnera a... 160 5e-39 sp|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimerase OS=Buchnera a... 160 6e-39 sp|P0AG10|RPE_SHIFL Ribulose-phosphate 3-epimerase OS=Shigella f... 158 2e-38 sp|P0AG07|RPE_ECOLI Ribulose-phosphate 3-epimerase OS=Escherichi... 158 2e-38 sp|P0AG08|RPE_ECOL6 Ribulose-phosphate 3-epimerase OS=Escherichi... 158 2e-38 sp|P0AG09|RPE_ECO57 Ribulose-phosphate 3-epimerase OS=Escherichi... 158 2e-38 sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase OS=Aquifex ae... 157 4e-38 sp|P44756|RPE_HAEIN Ribulose-phosphate 3-epimerase OS=Haemophilu... 155 2e-37 sp|P51013|RPE_RHORU Ribulose-phosphate 3-epimerase OS=Rhodospiri... 152 2e-36 sp|O66107|RPE_TREPA Ribulose-phosphate 3-epimerase OS=Treponema ... 145 2e-34 sp|Q9L0Z5|RPE_STRCO Ribulose-phosphate 3-epimerase OS=Streptomyc... 141 3e-33 sp|P65760|RPE_MYCTU Ribulose-phosphate 3-epimerase OS=Mycobacter... 140 7e-33 sp|P65761|RPE_MYCBO Ribulose-phosphate 3-epimerase OS=Mycobacter... 140 7e-33 sp|Q9ZJ75|RPE_HELPJ Ribulose-phosphate 3-epimerase OS=Helicobact... 137 4e-32 sp|P56188|RPE_HELPY Ribulose-phosphate 3-epimerase OS=Helicobact... 136 8e-32 sp|Q89A59|RPE_BUCBP Ribulose-phosphate 3-epimerase OS=Buchnera a... 135 1e-31 sp|Q9CCP9|RPE_MYCLE Ribulose-phosphate 3-epimerase OS=Mycobacter... 134 4e-31 sp|O84123|RPE_CHLTR Ribulose-phosphate 3-epimerase OS=Chlamydia ... 133 6e-31 sp|Q9PKR7|RPE_CHLMU Ribulose-phosphate 3-epimerase OS=Chlamydia ... 132 1e-30 sp|Q9Z8Z9|RPE_CHLPN Ribulose-phosphate 3-epimerase OS=Chlamydia ... 131 3e-30 sp|Q58093|RPE_METJA Ribulose-phosphate 3-epimerase OS=Methanocal... 129 2e-29
>sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1 Length = 280
Score = 307 bits (786), Expect = 3e-83 Identities = 149/161 (92%), Positives = 159/161 (98%) Frame = +3
Query: 135 ATSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPL 314 A+SRVDKFSKSDIIVSPSILSANFSKLGEQVKA+++AGCDWIHVDVMDGRFVPNITIGPL Sbjct: 45 ASSRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPL 104
Query: 315 VVDALRPVTDLPLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLG 494 VVD+LRP+TDLPLDVHLMIVEP+QRVPDF+KAGADIVSVHCEQSSTIHLHRT+NQIKSLG Sbjct: 105 VVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLG 164
Query: 495 AKAGVVLNPGTPLTGIEYILDVVDLVLIMSVNPGFGGQSFI 617 AKAGVVLNPGTPLT IEY+LD VDLVLIMSVNPGFGGQSFI Sbjct: 165 AKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFI 205
>sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=RPE PE=1 SV=2 Length = 274
Score = 307 bits (786), Expect = 3e-83 Identities = 152/162 (93%), Positives = 159/162 (98%) Frame = +3
Query: 132 RATSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGP 311 RA+SRVDKFSK+DIIVSPSILSANFSKLGEQVKAV+ AGCDWIHVDVMDGRFVPNITIGP Sbjct: 38 RASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGP 97
Query: 312 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSL 491 LVVDALRPVTDLPLDVHLMIVEPEQRVPDF+KAGADIVSVHCEQSSTIHLHRT+NQIKSL Sbjct: 98 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSL 157
Query: 492 GAKAGVVLNPGTPLTGIEYILDVVDLVLIMSVNPGFGGQSFI 617 GAKAGVVLNP TPLT I+Y+LDVVDLVLIMSVNPGFGGQSFI Sbjct: 158 GAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPGFGGQSFI 199
>sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea GN=RPE PE=1 SV=1 Length = 285
Score = 304 bits (779), Expect = 2e-82 Identities = 151/162 (93%), Positives = 159/162 (98%) Frame = +3
Query: 132 RATSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGP 311 +ATSRVDKFSKSDIIVSPSILSANF+KLGEQVKAV+ AGCDWIHVDVMDGRFVPNITIGP Sbjct: 49 KATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP 108
Query: 312 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSL 491 LVVDALRPVTDLPLDVHLMIVEPEQRVPDF+KAGADIVSVHCE +STIHLHRT+NQIKSL Sbjct: 109 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSL 168
Query: 492 GAKAGVVLNPGTPLTGIEYILDVVDLVLIMSVNPGFGGQSFI 617 GAKAGVVLNPGTPL+ IEY+LDVVDLVLIMSVNPGFGGQSFI Sbjct: 169 GAKAGVVLNPGTPLSTIEYVLDVVDLVLIMSVNPGFGGQSFI 210
>sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803) GN=rpe PE=1 SV=3 Length = 230
Score = 232 bits (592), Expect = 1e-60 Identities = 112/150 (74%), Positives = 131/150 (87%) Frame = +3
Query: 168 DIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 347 +I+V+PSILSA+FS+LGE++KAVDEAG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T Sbjct: 4 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKK 63
Query: 348 PLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPGT 527 LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI+ LG KAG VLNP T Sbjct: 64 TLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPST 123
Query: 528 PLTGIEYILDVVDLVLIMSVNPGFGGQSFI 617 PL +EY+L V DL+LIMSVNPGFGGQSFI Sbjct: 124 PLDFLEYVLPVCDLILIMSVNPGFGGQSFI 153
>sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus subtilis GN=rpe PE=3 SV=1 Length = 217
Score = 199 bits (507), Expect = 7e-51 Identities = 98/149 (65%), Positives = 121/149 (81%) Frame = +3
Query: 171 IIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 350 I V+PSILSA+F+ LG ++K V++ G D IH+DVMDG FVPNITIGPL+V+A+RPVTDLP Sbjct: 2 IKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLP 61
Query: 351 LDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPGTP 530 LDVHLMI EP++ +P F KAGADI+SVH E + HLHRT+ IK G KAGVVLNP TP Sbjct: 62 LDVHLMIEEPDRYIPAFAKAGADILSVHAE--ACPHLHRTIQLIKEQGVKAGVVLNPHTP 119
Query: 531 LTGIEYILDVVDLVLIMSVNPGFGGQSFI 617 + IE++ D +DLVL+M+VNPGFGGQ FI Sbjct: 120 VQVIEHVFDDLDLVLLMTVNPGFGGQKFI 148
>sp|P40117|RPEC_RALEH Ribulose-phosphate 3-epimerase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEC PE=3 SV=1 Length = 241
Score = 171 bits (433), Expect = 3e-42 Identities = 83/153 (54%), Positives = 115/153 (75%) Frame = +3
Query: 159 SKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 338 S+ I ++PSILSA+F++LGE+V A++ G D +H DVMD +VPN+TIGPLV +A+RP+ Sbjct: 12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPL 71
Query: 339 TDLPLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLN 518 +P+DVHLM+ + +P F KAGA+I+S H E S H+ RT+ I+ G KAG+VLN Sbjct: 72 VSIPIDVHLMVEPVDALIPLFAKAGANIISFHPEASR--HVDRTIGLIRDHGCKAGLVLN 129
Query: 519 PGTPLTGIEYILDVVDLVLIMSVNPGFGGQSFI 617 P TPL +++ LD +DLVL+MSVNPGFGGQ+FI Sbjct: 130 PATPLGWLDHTLDQLDLVLLMSVNPGFGGQAFI 162
>sp|Q04539|RPEP_RALEH Ribulose-phosphate 3-epimerase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEP PE=3 SV=1 Length = 241
Score = 169 bits (427), Expect = 1e-41 Identities = 81/153 (52%), Positives = 115/153 (75%) Frame = +3
Query: 159 SKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 338 S+ I ++PSILSA+F++LGE+V A++ G D +H DVMD +V N+TIGPLV +A+RP+ Sbjct: 12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPL 71
Query: 339 TDLPLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLN 518 +P+DVHLM+ + +P F KAGA+++S H E S H+ RT+ I+ G KAG+VLN Sbjct: 72 VSIPIDVHLMVEPVDALIPMFAKAGANLISFHPEASR--HVDRTIGLIRDHGCKAGLVLN 129
Query: 519 PGTPLTGIEYILDVVDLVLIMSVNPGFGGQSFI 617 P TPL+ +++ LD +DLVL+MSVNPGFGGQ+FI Sbjct: 130 PATPLSWLDHTLDKLDLVLLMSVNPGFGGQAFI 162
>sp|P45455|RPE_SERMA Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3 SV=1 Length = 210
Score = 161 bits (407), Expect = 3e-39 Identities = 80/149 (53%), Positives = 108/149 (72%), Gaps = 1/149 (0%) Frame = +3
Query: 174 IVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLP 350 +++PSILSA+F++LGE V AG D +H DVMD +VPN+TIGP+V +ALR P Sbjct: 5 LIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCEALRNYGITAP 64
Query: 351 LDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPGTP 530 +DVHLM+ ++ VPDF KAGA +S H E S H+ RT+ IK G KAG+V NP TP Sbjct: 65 IDVHLMVKPVDRIVPDFAKAGASYISFHPEASE--HVDRTIQLIKEHGCKAGLVFNPATP 122
Query: 531 LTGIEYILDVVDLVLIMSVNPGFGGQSFI 617 L+ ++Y++D +D++L+MSVNPGFGGQSFI Sbjct: 123 LSYLDYVMDKIDVILLMSVNPGFGGQSFI 151
>sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE PE=3 SV=2 Length = 228
Score = 161 bits (407), Expect = 3e-39 Identities = 73/149 (48%), Positives = 104/149 (69%) Frame = +3
Query: 171 IIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 350 I ++PSILSA+F+ G +++A++ G DW+HVDVMDG FVPN+T GP V A R Sbjct: 7 IKIAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFRKHVKTV 66
Query: 351 LDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPGTP 530 +DVHLMI + + + +AGAD+++ H E H+HRTL I++ G K+GV +NPGTP Sbjct: 67 MDVHLMISPVDAYIDAYAQAGADVLTAHVEAGP--HIHRTLQAIRAAGMKSGVAINPGTP 124
Query: 531 LTGIEYILDVVDLVLIMSVNPGFGGQSFI 617 IE++LD+ D+V +M+VNPGFGGQ +I Sbjct: 125 AEAIEHVLDIADVVCVMTVNPGFGGQKYI 153
>sp|P57603|RPE_BUCAI Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpe PE=3 SV=1 Length = 228
Score = 160 bits (405), Expect = 5e-39 Identities = 76/148 (51%), Positives = 109/148 (73%), Gaps = 1/148 (0%) Frame = +3
Query: 177 VSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPL 353 ++PSILSA+F++LGE +K V +AG D IH DVMD +VPN+++GP+++++LR P+ Sbjct: 6 LAPSILSADFARLGEDIKKVIDAGSDLIHFDVMDNHYVPNLSMGPMILESLRNYNITAPI 65
Query: 354 DVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPGTPL 533 DVHLM+ + +P F KAGA ++ H E +T+H+ RTLN IK G KAG+ NP TPL Sbjct: 66 DVHLMVKPVDNLIPQFAKAGATFITFHPE--ATLHIERTLNLIKENGCKAGLAFNPATPL 123
Query: 534 TGIEYILDVVDLVLIMSVNPGFGGQSFI 617 ++YIL+ +DL+L+MSVNPGFG QSF+ Sbjct: 124 NFLDYILEKLDLILLMSVNPGFGNQSFL 151
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q10R77 |
Definition |
tr|Q10R77|Q10R77_ORYSJ Os03g0169100 protein OS=Oryza sativa subsp. japonica |
Align length |
162 |
Score (bit) |
307.0 |
E-value |
4.0e-82 |
Report |
|