DK948517 |
Clone id |
TST38A01NGRL0003_I10 |
Library |
TST38 |
Length |
702 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_I10. 5' end sequence. |
Accession |
DK948517 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL135Contig1 |
Sequence |
CCTCCTTGTACAGCACAGATTATCGGCCCTCATCATGGCTCTGCTGCAAGCTGCCAACTC CATTTCCTGCACCCACAAGCTCTCCCTTCCCGTACAACGCCCCGCCCACAGTAGGATTTG CTCTTCTCTCTCTACGCCCACCCTCAAGGGAGTGCCTCCTCCCTCTTTAAGGTTCGGATC CTCTTTTTTCAATGGCTCCAGCCTGCTGAAGGTGAAGAGAGAGATACAAGAGCTGAAGAG CGGCAGCAATTCGAGTAAGGGGGGAGCTTGCACAGCAACCAGTTCTATCACTCTCTCGGG CGAGTTGCTGCGATGGATCTTTGCCGGCGCAGCGGCGGTGCTTATGTACCTCAAGAACAC ATCTATTAACAAGAATATTCTGGTTCCATTGTTGGCATTGCAAGCTCCACGCGATGTTGT CACAGCGGTCCGGGGTGAATATGGACTTTGGGCGGCGTTTCTAGCTCTATTGGTTAGGTT GTTTTACCAACTTCCAGGGGAGCTCGAGCTACCGCTTGTGCTTGTGTTGCTATTGATCAC CGCACCTCTTCAAGTTTTGGACATCAGAAGGACAACGGCCGCGCTAGTGGTGAGTGCATG TGTGGCAGCATACCTAGTGTACCAACATGTGAATGGNGCAGGAGGAGTGAAGGAGTCTTT CAAAGGAGGTGCCTTGTTGGCTAGCTTGGCTGTTATCATCCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6NYU2 |
Definition |
sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio |
Align length |
25 |
Score (bit) |
29.6 |
E-value |
4.1 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) |
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LQ60 |
Definition |
tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
155 |
Score (bit) |
132.0 |
E-value |
2.0e-29 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK948517|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0003_I10, 5' (702 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea... 132 2e-29 tr|Q84LB5|Q84LB5_CRYJA Cold acclimation protein COR413-TM1 OS=Cr... 117 5e-25 tr|B6T8R2|B6T8R2_MAIZE Cold acclimation WCOR413-like protein gam... 116 2e-24 tr|Q688W8|Q688W8_ORYSJ Os05g0566800 protein OS=Oryza sativa subs... 109 1e-22 tr|Q84XU8|Q84XU8_ORYSJ Cold acclimation protein COR413-TM1 OS=Or... 109 2e-22 tr|B8AWS3|B8AWS3_ORYSI Putative uncharacterized protein OS=Oryza... 109 2e-22 tr|Q84XU9|Q84XU9_WHEAT Cold acclimation protein COR413-TM1 OS=Tr... 106 1e-21 tr|Q8W0V1|Q8W0V1_HORVD Cold acclimation WCOR413-like protein gam... 105 2e-21 tr|A7QQJ9|A7QQJ9_VITVI Chromosome undetermined scaffold_143, who... 100 2e-19 tr|A3B6W4|A3B6W4_ORYSJ Putative uncharacterized protein OS=Oryza... 94 6e-18 tr|Q9C7R2|Q9C7R2_ARATH Putative uncharacterized protein F15D2.29... 94 8e-18 tr|Q94AL8|Q94AL8_ARATH Putative uncharacterized protein At1g2939... 94 8e-18 tr|Q8RXM0|Q8RXM0_ARATH Putative uncharacterized protein At1g2939... 94 1e-17 tr|Q8L813|Q8L813_ARATH Putative uncharacterized protein At1g2939... 92 3e-17 tr|Q84LB3|Q84LB3_MAIZE Truncated cold acclimation protein COR413... 87 1e-15 tr|B7ZY82|B7ZY82_MAIZE Putative uncharacterized protein OS=Zea m... 87 1e-15 tr|A9RCW6|A9RCW6_PHYPA Predicted protein (Fragment) OS=Physcomit... 81 7e-14 tr|Q93WS4|Q93WS4_PHYPA Cold acclimation protein WCOR413-like pro... 68 5e-10 tr|A9S4D3|A9S4D3_PHYPA Predicted protein OS=Physcomitrella paten... 68 5e-10 tr|B5TV68|B5TV68_CAMSI Cold acclimation protein WCOR413-like pro... 65 3e-09 tr|A9SZ92|A9SZ92_PHYPA Predicted protein OS=Physcomitrella paten... 63 2e-08 tr|A9S0S4|A9S0S4_PHYPA Predicted protein OS=Physcomitrella paten... 62 5e-08 tr|A9RWC5|A9RWC5_PHYPA Predicted protein OS=Physcomitrella paten... 61 6e-08 tr|P93613|P93613_WHEAT Cold acclimation protein WCOR413 OS=Triti... 56 2e-06 tr|A9PCB7|A9PCB7_POPTR Putative uncharacterized protein OS=Popul... 56 2e-06 tr|A9PBY4|A9PBY4_POPTR Putative uncharacterized protein OS=Popul... 56 3e-06 tr|A7XFB7|A7XFB7_PONTR Cold acclimation WCOR413-like protein OS=... 56 3e-06 tr|A9X4J8|A9X4J8_9MAGN Cold acclimation protein COR413-PM1 OS=Ch... 55 3e-06 tr|Q9FUW4|Q9FUW4_ORYSJ Os03g0767800 protein OS=Oryza sativa subs... 54 1e-05 tr|A9NT54|A9NT54_PICSI Putative uncharacterized protein OS=Picea... 54 1e-05
>tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 245
Score = 132 bits (332), Expect = 2e-29 Identities = 68/155 (43%), Positives = 94/155 (60%) Frame = +2
Query: 233 LKSGSNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPR 412 + S + SS GGA + S+ LS E LRW+F AA VLM K+T+INK+ LVPLLAL+AP Sbjct: 75 IHSIARSSYGGALSTECSVALSTEALRWLFGVAAVVLMLSKHTAINKSFLVPLLALEAPG 134
Query: 413 DVVTAVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVV 592 DV + +RG+YGLW AFL LVRLFY ++R T A +V+ Sbjct: 135 DVFSWIRGDYGLWTAFLVFLVRLFYYIPGELELPFLFVLLVVIAPYQATNLRGTQAGMVI 194
Query: 593 SACVAAYLVYQHVNGAGGVKESFKGGALLASLAVI 697 S +AYL+YQHV GG+K++F G ++ ++A + Sbjct: 195 SMAASAYLIYQHVTKTGGIKKAFDQGVVVPTIAAV 229
>tr|Q84LB5|Q84LB5_CRYJA Cold acclimation protein COR413-TM1 OS=Cryptomeria japonica PE=2 SV=1 Length = 241
Score = 117 bits (294), Expect = 5e-25 Identities = 63/155 (40%), Positives = 90/155 (58%), Gaps = 3/155 (1%) Frame = +2
Query: 236 KSGSNSSKGGACT---ATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQA 406 K G +GG + A + S E LRW+FA ++ VLM+ K+T I K+ LVPLLALQA Sbjct: 69 KLGGRGKRGGTSSIQCARVDLLYSTEALRWLFAVSSVVLMFSKHTVIRKSFLVPLLALQA 128
Query: 407 PRDVVTAVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAAL 586 P DVV+ +RG+YGLW AF L+RLFY +R T A++ Sbjct: 129 PGDVVSWIRGDYGLWTAFSIFLIRLFYPIPGEMELPLLFVLLVIIAPSQASSMRGTQASM 188
Query: 587 VVSACVAAYLVYQHVNGAGGVKESFKGGALLASLA 691 V+S ++AYL +QH AG VK++F+ +++AS+A Sbjct: 189 VISTAISAYLSFQHFTNAGSVKKAFEQNSVVASIA 223
>tr|B6T8R2|B6T8R2_MAIZE Cold acclimation WCOR413-like protein gamma form OS=Zea mays PE=2 SV=1 Length = 226
Score = 116 bits (290), Expect = 2e-24 Identities = 60/148 (40%), Positives = 87/148 (58%) Frame = +2
Query: 254 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 433 S+G A SS LS ++WI AGA+AVL+ K T+I+K+ LVP ALQAP +++ ++ Sbjct: 68 SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127
Query: 434 GEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACVAAY 613 G+YG W AFLALLVRLF+ D+R T V+S +AAY Sbjct: 128 GDYGQWTAFLALLVRLFFFIPGELELPLSTMLLVSVAPYQFMDLRGTQGGAVLSLAIAAY 187
Query: 614 LVYQHVNGAGGVKESFKGGALLASLAVI 697 L +QH GG ++F+ G+++A+LA+I Sbjct: 188 LAFQHFTRVGGPGKAFEQGSIVATLAII 215
>tr|Q688W8|Q688W8_ORYSJ Os05g0566800 protein OS=Oryza sativa subsp. japonica GN=OJ1781_H11.9 PE=2 SV=1 Length = 222
Score = 109 bits (273), Expect = 1e-22 Identities = 56/151 (37%), Positives = 85/151 (56%) Frame = +2
Query: 245 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 424 ++ +GGA SS LS ++W+ AGA AVL+ K T+I+K+ LVPL AL AP V++ Sbjct: 61 ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120
Query: 425 AVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACV 604 ++ +YG W AFLALLVRLF+ ++R T +S + Sbjct: 121 WIKSDYGQWTAFLALLVRLFFSIPGELELPLSTMLLVSVAPYQLMNLRGTQGGAALSLAL 180
Query: 605 AAYLVYQHVNGAGGVKESFKGGALLASLAVI 697 A YL +QH GG+ ++F G+++A+LA+I Sbjct: 181 AGYLAFQHFTRVGGLGKAFDQGSIIATLAII 211
>tr|Q84XU8|Q84XU8_ORYSJ Cold acclimation protein COR413-TM1 OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 222
Score = 109 bits (272), Expect = 2e-22 Identities = 56/151 (37%), Positives = 85/151 (56%) Frame = +2
Query: 245 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 424 ++ +GGA SS LS ++W+ AGA AVL+ K T+I+K+ LVPL AL AP V++ Sbjct: 61 ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPSSVIS 120
Query: 425 AVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACV 604 ++ +YG W AFLALLVRLF+ ++R T +S + Sbjct: 121 WIKSDYGQWTAFLALLVRLFFCIPGELELPLSTMLLVSVAPYQLMNLRGTQGGAALSLAL 180
Query: 605 AAYLVYQHVNGAGGVKESFKGGALLASLAVI 697 A YL +QH GG+ ++F G+++A+LA+I Sbjct: 181 AGYLAFQHFTRVGGLGKAFDQGSIIATLAII 211
>tr|B8AWS3|B8AWS3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_21013 PE=4 SV=1 Length = 222
Score = 109 bits (272), Expect = 2e-22 Identities = 56/151 (37%), Positives = 85/151 (56%) Frame = +2
Query: 245 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 424 ++ +GGA SS LS ++W+ AGA AVL+ K T+I+K+ LVPL AL AP V++ Sbjct: 61 ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120
Query: 425 AVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACV 604 ++ +YG W AFLALLVRLF+ ++R T +S + Sbjct: 121 WIKSDYGHWTAFLALLVRLFFSIPGELELPLSTMLLVSVAPYQLMNLRGTQGGAALSLAL 180
Query: 605 AAYLVYQHVNGAGGVKESFKGGALLASLAVI 697 A YL +QH GG+ ++F G+++A+LA+I Sbjct: 181 AGYLAFQHFTRVGGLGKAFDQGSIIATLAII 211
>tr|Q84XU9|Q84XU9_WHEAT Cold acclimation protein COR413-TM1 OS=Triticum aestivum PE=2 SV=1 Length = 221
Score = 106 bits (265), Expect = 1e-21 Identities = 55/148 (37%), Positives = 81/148 (54%) Frame = +2
Query: 254 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 433 S+G +S LS +W+ AAAVL+ K T I+K+ LVPL LQAP V++ ++ Sbjct: 63 SRGSGIVCNASAYLSPPTTQWVSVAAAAVLLLAKGTGIHKSFLVPLFVLQAPTAVISWIK 122
Query: 434 GEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACVAAY 613 EYGLW AFLAL+VRLF ++R T +VS +AAY Sbjct: 123 SEYGLWTAFLALVVRLFLPFPGELELPLSTMLAVSVAPYQVMNVRGTQGGAIVSLALAAY 182
Query: 614 LVYQHVNGAGGVKESFKGGALLASLAVI 697 L +QH GG+ ++F G+++A++A+I Sbjct: 183 LAFQHFTRTGGIGKAFDQGSIVATMAII 210
>tr|Q8W0V1|Q8W0V1_HORVD Cold acclimation WCOR413-like protein gamma form OS=Hordeum vulgare var. distichum PE=2 SV=1 Length = 215
Score = 105 bits (263), Expect = 2e-21 Identities = 55/148 (37%), Positives = 81/148 (54%) Frame = +2
Query: 254 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 433 S+G ++S LS +W+ AAAVL+ K T I+K+ LVPL LQAP V++ ++ Sbjct: 57 SRGSGIVCSASAYLSPPTTQWVSVAAAAVLLLAKGTGIHKSFLVPLFVLQAPTAVISWIK 116
Query: 434 GEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACVAAY 613 EYGLW AFLAL VRLF ++R T +VS +AAY Sbjct: 117 SEYGLWTAFLALAVRLFLPFPGELELPLSTMLAVSVAPYQVMNVRGTQGGTIVSLVLAAY 176
Query: 614 LVYQHVNGAGGVKESFKGGALLASLAVI 697 L +QH GG+ ++F G+++A++A+I Sbjct: 177 LAFQHFTRTGGIGKAFDQGSIVATMAII 204
>tr|A7QQJ9|A7QQJ9_VITVI Chromosome undetermined scaffold_143, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00003392001 PE=4 SV=1 Length = 162
Score = 99.8 bits (247), Expect = 2e-19 Identities = 51/138 (36%), Positives = 79/138 (57%) Frame = +2
Query: 284 SITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVRGEYGLWAAFL 463 S L+ L+W+ ++AVLM + T+ K+ LVPL ALQAP +++ ++GEYG W AFL Sbjct: 14 SAPLTPPNLQWVCTVSSAVLMLSRGTAAQKSFLVPLFALQAPTSIISWIKGEYGAWTAFL 73
Query: 464 ALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRRTTAALVVSACVAAYLVYQHVNGAG 643 ALLVRLF+ ++R T +VS +A YL +QH + AG Sbjct: 74 ALLVRLFFFIPGELELPFVALLLVIVAPYQVMNLRGTQMGAIVSLLIAGYLAFQHFSRAG 133
Query: 644 GVKESFKGGALLASLAVI 697 ++ +F G+++A+LA+I Sbjct: 134 SLQRAFNQGSIVATLAII 151
>tr|A3B6W4|A3B6W4_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_018786 PE=4 SV=1 Length = 247
Score = 94.4 bits (233), Expect = 6e-18 Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 25/176 (14%) Frame = +2
Query: 245 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 424 ++ +GGA SS LS ++W+ AGA AVL+ K T+I+K+ LVPL AL AP V++ Sbjct: 61 ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120
Query: 425 AVRGEYGLWAAFLALLVRLFYQXXXXXXXXXXXXXXXXXXXXXXXDIRR----------- 571 ++ +YG W A LALLVRLF+ ++R Sbjct: 121 WIKSDYGQWTALLALLVRLFFSIPGELELPLSTMLLVSVAPYQLMNLRELLRKILLFSKV 180
Query: 572 --------------TTAALVVSACVAAYLVYQHVNGAGGVKESFKGGALLASLAVI 697 T +S +A YL +QH GG+ ++F G+++A+LA+I Sbjct: 181 LVLMLQFPFPVHRGTQGGAALSLALAGYLAFQHFTRVGGLGKAFDQGSIIATLAII 236
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