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NBDC - LSDB Archive
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DK948518
Clone id TST38A01NGRL0003_I11
Library
Length 599
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_I11. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AGATGATTCACAGTTGGCATCTGGCCCTACATATGGCAGGTTTGAAGAAGTTGGCTGCAA
CATAAATAGCTCCGATCAGCAGCAACAGGATTCTGATGGTTTGGAGCTTTTCAGTGATTT
CTCTGCTGATTCTGGATCTGATTTCTCTCTGGATGCTCAGTCAGGTTCTGAAGTGGGTGT
AGATAATGATGTGACCACGCACAGTCTGGAGTTTGTTGAGACTGAGGCAAAGTTGGACTC
ACTGCCTTGGAGACAATCAGGAGTTGATGAAGTAGAATTCAAGGAAGGACATTTTATGCG
CCTAGGTTCTGATGAGAAGCTTGATGATTCAGAAGTCTTAAGGCTAATAATGCAGCAGGA
GGAGGAGCTTCAAATGCTGCGGACAAAACATGAAGAGGCAATTTCTGACTTAAAAATGCG
GATCACTCAGGATGCTACACTGAGGATAGACAAAGCTGCACCAAAAGATTCTTCAATATG
TAAGATATCTGGGGAAGTATTGCAGATGTCCAGAAGCCAAGATGAATCTCAGCCGGATGC
CGAGTCAGAAATATGTGTTCATGGGGCTGAAACTGCGTGTTTCAGCACTAGCATCTCAA
■■Homology search results ■■ -
sp_hit_id Q7SYF8
Definition sp|Q7SYF8|K1C18_ACIBE Keratin, type I cytoskeletal 18 OS=Acipenser baerii
Align length 84
Score (bit) 37.4
E-value 0.058
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948518|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_I11, 5'
         (599 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7SYF8|K1C18_ACIBE Keratin, type I cytoskeletal 18 OS=Acipens...    37   0.058
sp|P05783|K1C18_HUMAN Keratin, type I cytoskeletal 18 OS=Homo sa...    36   0.13 
sp|Q7SY65|K118B_XENLA Keratin, type I cytoskeletal 18-B OS=Xenop...    36   0.17 
sp|Q5BJY9|K1C18_RAT Keratin, type I cytoskeletal 18 OS=Rattus no...    35   0.22 
sp|P05784|K1C18_MOUSE Keratin, type I cytoskeletal 18 OS=Mus mus...    35   0.22 
sp|P08802|K118A_XENLA Keratin, type I cytoskeletal 18-A OS=Xenop...    35   0.29 
sp|P13533|MYH6_HUMAN Myosin-6 OS=Homo sapiens GN=MYH6 PE=1 SV=4        35   0.38 
sp|Q6P864|K1C18_XENTR Keratin, type I cytoskeletal 18 OS=Xenopus...    34   0.49 
sp|Q076A4|MYH8_CANFA Myosin-8 OS=Canis familiaris GN=MYH8 PE=3 SV=1    34   0.65 
sp|P49824|MYH7_CANFA Myosin-7 OS=Canis familiaris GN=MYH7 PE=1 SV=3    34   0.65 
sp|Q8MJU9|MYH7_HORSE Myosin-7 OS=Equus caballus GN=MYH7 PE=2 SV=1      33   0.84 
sp|P02563|MYH6_RAT Myosin-6 OS=Rattus norvegicus GN=Myh6 PE=2 SV=2     33   1.1  
sp|P02567|MYO1_CAEEL Myosin-1 OS=Caenorhabditis elegans GN=let-7...    33   1.4  
sp|P79293|MYH7_PIG Myosin-7 OS=Sus scrofa GN=MYH7 PE=2 SV=2            33   1.4  
sp|P12883|MYH7_HUMAN Myosin-7 OS=Homo sapiens GN=MYH7 PE=1 SV=5        33   1.4  
sp|Q02566|MYH6_MOUSE Myosin-6 OS=Mus musculus GN=Myh6 PE=1 SV=2        33   1.4  
sp|P13539|MYH6_MESAU Myosin-6 OS=Mesocricetus auratus GN=MYH6 PE...    33   1.4  
sp|Q14532|K1H2_HUMAN Keratin, type I cuticular Ha2 OS=Homo sapie...    33   1.4  
sp|Q61043|NIN_MOUSE Ninein OS=Mus musculus GN=Nin PE=2 SV=2            32   1.9  
sp|P13535|MYH8_HUMAN Myosin-8 OS=Homo sapiens GN=MYH8 PE=1 SV=3        32   1.9  
sp|Q076A5|MYH4_CANFA Myosin-4 OS=Canis familiaris GN=MYH4 PE=3 SV=1    32   1.9  
sp|Q9TV63|MYH2_PIG Myosin-2 OS=Sus scrofa GN=MYH2 PE=2 SV=1            32   1.9  
sp|Q8MJV1|MYH2_HORSE Myosin-2 OS=Equus caballus GN=MYH2 PE=2 SV=1      32   1.9  
sp|Q9BE41|MYH2_BOVIN Myosin-2 OS=Bos taurus GN=MYH2 PE=2 SV=1          32   1.9  
sp|Q28641|MYH4_RABIT Myosin-4 OS=Oryctolagus cuniculus GN=MYH4 P...    32   2.5  
sp|Q9UKX2|MYH2_HUMAN Myosin-2 OS=Homo sapiens GN=MYH2 PE=1 SV=1        32   2.5  
sp|Q9TV61|MYH1_PIG Myosin-1 OS=Sus scrofa GN=MYH1 PE=2 SV=1            32   2.5  
sp|Q8MJV0|MYH1_HORSE Myosin-1 OS=Equus caballus GN=MYH1 PE=2 SV=1      32   2.5  
sp|Q076A6|MYH1_CANFA Myosin-1 OS=Canis familiaris GN=MYH1 PE=3 SV=2    32   2.5  
sp|Q9BE40|MYH1_BOVIN Myosin-1 OS=Bos taurus GN=MYH1 PE=2 SV=2          32   2.5  

>sp|Q7SYF8|K1C18_ACIBE Keratin, type I cytoskeletal 18 OS=Acipenser
           baerii GN=krt18 PE=2 SV=1
          Length = 435

 Score = 37.4 bits (85), Expect = 0.058
 Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
 Frame = +2

Query: 302 LGSDEKLDDSEVLRLIMQQE-----EELQMLRTKHEEAISDLKMRITQDATLRIDKAAPK 466
           +G  + +DD+ + R+ ++ E     EEL  ++  H + ++DL+ +I Q   +++D  APK
Sbjct: 188 IGLRKVIDDTNMGRMNLESEIESLKEELIFIKQNHNQEVNDLRNQIAQSG-VQVDVDAPK 246

Query: 467 DSSICKISGEVLQMSRSQDESQPD 538
              + ++  EV     S  +   D
Sbjct: 247 GQDLAQVLAEVRAQYESMAQKNRD 270


>sp|P05783|K1C18_HUMAN Keratin, type I cytoskeletal 18 OS=Homo
           sapiens GN=KRT18 PE=1 SV=2
          Length = 430

 Score = 36.2 bits (82), Expect = 0.13
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +2

Query: 305 GSDEKLDDSEVLRLIMQQE-----EELQMLRTKHEEAISDLKMRITQDATLRIDKAAPKD 469
           G  + +DD+ + RL ++ E     EEL  ++  HEE +  L+ +I     L ++  APK 
Sbjct: 184 GLRKVIDDTNITRLQLETEIEALKEELLFMKKNHEEEVKGLQAQIASSG-LTVEVDAPKS 242

Query: 470 SSICKISGEV 499
             + KI  ++
Sbjct: 243 QDLAKIMADI 252


>sp|Q7SY65|K118B_XENLA Keratin, type I cytoskeletal 18-B OS=Xenopus
           laevis GN=krt18-B PE=2 SV=1
          Length = 432

 Score = 35.8 bits (81), Expect = 0.17
 Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
 Frame = +2

Query: 305 GSDEKLDDSEVLRLIMQQE-----EELQMLRTKHEEAISDLKMRITQDA-TLRIDKAAPK 466
           G  + +DD+ + RL ++ E     EEL  L+  H++ +++L+ +I + A T+ +D  APK
Sbjct: 186 GLRKLIDDTNISRLNLENEIESLKEELIFLKKNHQDDVNELQAQIARSAVTVEVD--APK 243

Query: 467 DSSICKISGEV 499
              + KI  E+
Sbjct: 244 SQDLGKIMAEL 254


>sp|Q5BJY9|K1C18_RAT Keratin, type I cytoskeletal 18 OS=Rattus
           norvegicus GN=Krt18 PE=1 SV=3
          Length = 423

 Score = 35.4 bits (80), Expect = 0.22
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +2

Query: 305 GSDEKLDDSEVLRLIMQQE-----EELQMLRTKHEEAISDLKMRITQDATLRIDKAAPKD 469
           G  + +DD+ + RL ++ E     EEL  ++  HEE +  L+ +I     L ++  APK 
Sbjct: 177 GLRKVVDDTNITRLQLETEIEALKEELLFMKKNHEEEVQGLEAQIASSG-LTVEVDAPKS 235

Query: 470 SSICKISGEV 499
             + KI  ++
Sbjct: 236 QDLSKIMADI 245


>sp|P05784|K1C18_MOUSE Keratin, type I cytoskeletal 18 OS=Mus
           musculus GN=Krt18 PE=1 SV=5
          Length = 423

 Score = 35.4 bits (80), Expect = 0.22
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +2

Query: 305 GSDEKLDDSEVLRLIMQQE-----EELQMLRTKHEEAISDLKMRITQDATLRIDKAAPKD 469
           G  + +DD+ + RL ++ E     EEL  ++  HEE +  L+ +I     L ++  APK 
Sbjct: 177 GLRKVVDDTNITRLQLETEIEALKEELLFMKKNHEEEVQGLEAQIASSG-LTVEVDAPKS 235

Query: 470 SSICKISGEV 499
             + KI  ++
Sbjct: 236 QDLSKIMADI 245


>sp|P08802|K118A_XENLA Keratin, type I cytoskeletal 18-A OS=Xenopus
           laevis GN=krt18-A PE=2 SV=2
          Length = 428

 Score = 35.0 bits (79), Expect = 0.29
 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
 Frame = +2

Query: 305 GSDEKLDDSEVLRLIMQQE-----EELQMLRTKHEEAISDLKMRITQDA-TLRIDKAAPK 466
           G  + +DD+ + RL ++ E     EEL  L+  H++ +++L+ +I   A T+ +D  APK
Sbjct: 182 GLRKLIDDTNISRLNLENEFESLKEELIFLKKNHQDDVNELQAQIASSAVTVEVD--APK 239

Query: 467 DSSICKISGEV-LQMSRSQDESQPDAE 544
              + KI  ++  Q      +++ D E
Sbjct: 240 SQDLGKIMADLRAQYDEMAQKNREDVE 266


>sp|P13533|MYH6_HUMAN Myosin-6 OS=Homo sapiens GN=MYH6 PE=1 SV=4
          Length = 1939

 Score = 34.7 bits (78), Expect = 0.38
 Identities = 27/125 (21%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
 Frame = +2

Query: 200  HSLEFVETEAKLDSLPWRQSGVDE----VEFKEGHFMRLGSDEKLDDSEVLRLIMQQEEE 367
            H LE V  + +++ L   QS ++E    +E +EG  +R   +     +E+ R + +++EE
Sbjct: 1526 HELEKVRKQLEVEKLEL-QSALEEAEASLEHEEGKILRAQLEFNQIKAEIERKLAEKDEE 1584

Query: 368  LQMLRTKHEEAISDLKMRI-----TQDATLRIDKAAPKDSSICKISGEVLQMSRSQDESQ 532
            ++  +  H+  +  L+  +     +++  LR+ K    D +  +I  ++   +R   E+Q
Sbjct: 1585 MEQAKRNHQRVVDSLQTSLDAETRSRNEVLRVKKKMEGDLNEMEI--QLSHANRMAAEAQ 1642

Query: 533  PDAES 547
               +S
Sbjct: 1643 KQVKS 1647


>sp|Q6P864|K1C18_XENTR Keratin, type I cytoskeletal 18 OS=Xenopus
           tropicalis GN=krt18 PE=2 SV=1
          Length = 429

 Score = 34.3 bits (77), Expect = 0.49
 Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
 Frame = +2

Query: 305 GSDEKLDDSEVLRLIMQQE-----EELQMLRTKHEEAISDLKMRITQDA-TLRIDKAAPK 466
           G  + +DD+ V R+ ++ E     EEL  L+  H++ +++L+ ++ + A T+ +D  APK
Sbjct: 182 GLRKLIDDTNVSRMNLENEIESLKEELIFLKKNHQDDVTELQAQVARSAVTVEVD--APK 239

Query: 467 DSSICKISGEV 499
              + KI  E+
Sbjct: 240 SQDLGKIMTEL 250


>sp|Q076A4|MYH8_CANFA Myosin-8 OS=Canis familiaris GN=MYH8 PE=3 SV=1
          Length = 1939

 Score = 33.9 bits (76), Expect = 0.65
 Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
 Frame = +2

Query: 167  SEVGVDNDVTTHSLEFVE-----TEAKLDSLPWRQSGVDEVEFK---EGHFMRLGSDEKL 322
            SE+  D D    +L  VE     TE K+ +L    +G+DE   K   E   ++    + L
Sbjct: 953  SELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETIAKLTKEKKALQEAHQQTL 1012

Query: 323  DDSEVLRLIMQQEEE----LQMLRTKHEEAISDLKMRITQDATLRIDKAAPKDSSICKIS 490
            DD       +Q EE+    L   +TK E+ + DL+  + Q+  LR+D    K     K+ 
Sbjct: 1013 DD-------LQAEEDKVNTLTKAKTKLEQQVDDLEGSLEQERKLRMDLERAKR----KLE 1061

Query: 491  GEVLQMSRSQDESQPDAESE 550
            G++    +   ES  DAE++
Sbjct: 1062 GDL----KLAQESTMDAEND 1077



 Score = 31.6 bits (70), Expect = 3.2
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
 Frame = +2

Query: 200  HSLEFVETEA---KLDSLPWRQSGVDEVEFKEGHFMRLGSDEKLDDSEVLRLIMQQEEEL 370
            H LE ++ +    K D     +     +E +EG  +R+  +     SEV R I +++EE+
Sbjct: 1529 HELEKIKKQVEQEKCDIQAALEEAEASLEHEEGKILRIQLELNQVKSEVDRKIAEKDEEI 1588

Query: 371  QMLRTKHEEAISDLKMRITQDATLR 445
              L+  H   +    M+ T DA +R
Sbjct: 1589 DQLKRNHIRVME--SMQSTLDAEIR 1611


>sp|P49824|MYH7_CANFA Myosin-7 OS=Canis familiaris GN=MYH7 PE=1 SV=3
          Length = 1935

 Score = 33.9 bits (76), Expect = 0.65
 Identities = 30/139 (21%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
 Frame = +2

Query: 194  TTHSLEFVETEAKLDSLPWRQSGVDE----VEFKEGHFMRLGSDEKLDDSEVLRLIMQQE 361
            T H LE V  + + + L   QS ++E    +E +EG  +R   +     +E+ R + +++
Sbjct: 1522 TIHELEKVRKQLEAEKLEL-QSALEEAEASLEHEEGKILRAQLEFNQIKAEIERKLAEKD 1580

Query: 362  EELQMLRTKHEEAISDLKMRITQDATLRIDKAAPKDSSICKISGEVLQMS-RSQDESQPD 538
            EE++  +  H   +  L+  +  +   R +    K     K+ G++ +M  +    ++  
Sbjct: 1581 EEMEQAKRNHLRVVDSLQTSLDAETRSRNEALRVKK----KMEGDLNEMEIQLSHANRMA 1636

Query: 539  AESEICVHGAETACFSTSI 595
            AE++  V G ++    T I
Sbjct: 1637 AEAQKQVKGLQSLLKDTQI 1655
tr_hit_id Q4SY69
Definition tr|Q4SY69|Q4SY69_TETNG Chromosome undetermined SCAF12162, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length 88
Score (bit) 42.0
E-value 0.027
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948518|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_I11, 5'
         (599 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4SY69|Q4SY69_TETNG Chromosome undetermined SCAF12162, whole ...    42   0.027
tr|B6ACW3|B6ACW3_9CRYT Structural maintenance of chromosomes pro...    41   0.060
tr|Q46J15|Q46J15_PROMT Transcription termination factor NusA OS=...    39   0.30 
tr|A2C4N9|A2C4N9_PROM1 N utilization substance protein A OS=Proc...    39   0.30 
tr|Q8QNE4|Q8QNE4_9PHYC EsV-1-135 OS=Ectocarpus siliculosus virus...    38   0.39 
tr|Q2HYL7|Q2HYL7_ICTPU Keratin 18 (Fragment) OS=Ictalurus puncta...    38   0.51 
tr|A9BCI3|A9BCI3_PROM4 N utilization substance protein A OS=Proc...    37   0.67 
tr|B2RA03|B2RA03_HUMAN cDNA, FLJ94640, highly similar to Homo sa...    36   1.5  
tr|Q73RB9|Q73RB9_TREDE Nuclease SbcCD, C subunit, putative OS=Tr...    36   1.9  
tr|Q6BDL5|Q6BDL5_FELCA Keratin 18 (Fragment) OS=Felis silvestris...    36   1.9  
tr|A2BDA6|A2BDA6_XENLA LOC100037084 protein OS=Xenopus laevis GN...    35   2.5  
tr|Q84EV9|Q84EV9_LACFE Putative uncharacterized protein OS=Lacto...    35   2.5  
tr|A8D349|A8D349_PIG Keratin 18 (Fragment) OS=Sus scrofa GN=KRT1...    35   2.5  
tr|A6H7D3|A6H7D3_BOVIN KRT18 protein (Fragment) OS=Bos taurus GN...    35   2.5  
tr|Q801T0|Q801T0_XENLA LOC398083 protein (Fragment) OS=Xenopus l...    35   3.3  
tr|O93522|O93522_XENLA Nonmuscle myosin II heavy chain A OS=Xeno...    35   3.3  
tr|B7ZS76|B7ZS76_XENLA LOC398083 protein OS=Xenopus laevis GN=LO...    35   3.3  
tr|B3GPH2|B3GPH2_EPICO Keratin 18 (Fragment) OS=Epinephelus coio...    35   3.3  
tr|Q7V5M6|Q7V5M6_PROMM N utilization substance protein A OS=Proc...    35   3.3  
tr|Q05WD8|Q05WD8_9SYNE Transcription elongation factor NusA OS=S...    35   3.3  
tr|A9XB09|A9XB09_DROTE Smad anchor for receptor activation (Frag...    35   3.3  
tr|A7SAB2|A7SAB2_NEMVE Predicted protein (Fragment) OS=Nematoste...    35   3.3  
tr|A7ESC9|A7ESC9_SCLS1 Putative uncharacterized protein OS=Scler...    35   3.3  
tr|B0YN90|B0YN90_CALMI Protocadherin nu6 OS=Callorhynchus milii ...    35   4.3  
tr|Q57UL2|Q57UL2_9TRYP Putative uncharacterized protein OS=Trypa...    35   4.3  
tr|Q4S9U8|Q4S9U8_TETNG Chromosome undetermined SCAF14694, whole ...    34   5.6  
tr|Q5WFM8|Q5WFM8_BACSK Chromosome segregation protein SMC OS=Bac...    34   5.6  
tr|Q0I2Y2|Q0I2Y2_HAES1 DNA repair protein OS=Haemophilus somnus ...    34   5.6  
tr|B0UT72|B0UT72_HAES2 DNA repair protein RecN OS=Haemophilus so...    34   5.6  
tr|Q1VW80|Q1VW80_9FLAO Putative uncharacterized protein OS=Psych...    34   5.6  

>tr|Q4SY69|Q4SY69_TETNG Chromosome undetermined SCAF12162, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00010477001 PE=4 SV=1
          Length = 379

 Score = 42.0 bits (97), Expect = 0.027
 Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 10/88 (11%)
 Frame = +2

Query: 320 LDDSEVLRLIMQQE-----EELQMLRTKHEEAISDLKMRITQDATLRIDKAAPKDSSICK 484
           LDD+ V+RL ++ +     EEL  L+  HE  ++DL+ +ITQ A + +D  APK   + +
Sbjct: 181 LDDTNVIRLHLENDIESLKEELITLKKNHETDLADLRAQITQ-AGVHVDVDAPKGQDLAR 239

Query: 485 ISGEVLQ-----MSRSQDESQPDAESEI 553
           +  E+ +       ++Q+E +   ES+I
Sbjct: 240 VMEEMREKYEKIALKNQEELKAWHESQI 267


>tr|B6ACW3|B6ACW3_9CRYT Structural maintenance of chromosomes
           protein, putative OS=Cryptosporidium muris RN66
           GN=CMU_017190 PE=4 SV=1
          Length = 1231

 Score = 40.8 bits (94), Expect = 0.060
 Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
 Frame = +2

Query: 158 QSGSEVGVDNDVTTHSLEFVETEAKLDSLPWRQSGVD-EVEFKEGHFMRLGSDEKLDDSE 334
           QSGS   VDN++    ++    + KL +L   Q+G D  +++KE   +R       D  +
Sbjct: 356 QSGSFEDVDNELNNLKVKLSNAKRKLQAL---QTGCDMSLDYKEQKSLR---QALFDVQK 409

Query: 335 VLRLIMQQEEELQMLRTKHEEAISDLKMRI---TQDATLRIDKAAPK----DSSICKISG 493
            L  I  +E +  +L  ++E+++S LK++I   T +    +DK   +     +SI K  G
Sbjct: 410 ELSDIKVKENKFTLLIIENEKSLSSLKLKIAKRTNNGKSSVDKLRDEYKELQNSIYKFEG 469

Query: 494 EVLQMSRSQD 523
           ++L++ +  +
Sbjct: 470 DLLELKKDAE 479


>tr|Q46J15|Q46J15_PROMT Transcription termination factor NusA
           OS=Prochlorococcus marinus (strain NATL2A) GN=PMN2A_1023
           PE=4 SV=1
          Length = 497

 Score = 38.5 bits (88), Expect = 0.30
 Identities = 25/79 (31%), Positives = 41/79 (51%)
 Frame = +2

Query: 311 DEKLDDSEVLRLIMQQEEELQMLRTKHEEAISDLKMRITQDATLRIDKAAPKDSSICKIS 490
           D+  +DSEV  LI Q+EEE  + R   +   ++   R  +DA LR     P+D    + +
Sbjct: 379 DQATEDSEVAELISQREEEESLQREAEKRLEAEQTARAEEDARLRELYPLPEDEEDFQ-N 437

Query: 491 GEVLQMSRSQDESQPDAES 547
            E+  +  ++ ES+ D ES
Sbjct: 438 EELSNIDSNETESESDFES 456


>tr|A2C4N9|A2C4N9_PROM1 N utilization substance protein A
           OS=Prochlorococcus marinus (strain NATL1A) GN=nusA PE=4
           SV=1
          Length = 497

 Score = 38.5 bits (88), Expect = 0.30
 Identities = 25/79 (31%), Positives = 41/79 (51%)
 Frame = +2

Query: 311 DEKLDDSEVLRLIMQQEEELQMLRTKHEEAISDLKMRITQDATLRIDKAAPKDSSICKIS 490
           D+  +DSEV  LI Q+EEE  + R   +   ++   R  +DA LR     P+D    + +
Sbjct: 379 DQATEDSEVAELISQREEEESLQREAEKRLEAEQTARAEEDARLRELYPLPEDEEDFQ-N 437

Query: 491 GEVLQMSRSQDESQPDAES 547
            E+  +  ++ ES+ D ES
Sbjct: 438 EELSNIDSNETESESDFES 456


>tr|Q8QNE4|Q8QNE4_9PHYC EsV-1-135 OS=Ectocarpus siliculosus virus 1
           GN=ORF 135 PE=4 SV=1
          Length = 547

 Score = 38.1 bits (87), Expect = 0.39
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
 Frame = +2

Query: 158 QSGSEVGVDNDVTTHSLEFVETEAKLDSLPWRQSGVDEVEFKEGHFMRLGSDEKLDDSEV 337
           Q+G + G D+D+ T      E E +       QSG D V+F+         D    +SE 
Sbjct: 395 QNGGDFGTDDDLDTDEDGDTEYETESSGSDSSQSG-DSVDFESSD---QSGDSSPSESES 450

Query: 338 LRLIMQQEEELQMLRT-KHEEAISDLKMRITQDATLRIDKAAPKDSSICKISGEVLQMSR 514
            +     E+E +   +    +  SD++M  T      ++     +SS  +   E    S 
Sbjct: 451 WQSASYCEDETETGESASSTDGESDVEMGETDGTYDDVESDTESESSESETETETESESE 510

Query: 515 SQDESQPDAESEICVHGAETACFST 589
           S+ ES+ ++ESE     +E++C ST
Sbjct: 511 SESESESESESE---SDSESSCGST 532


>tr|Q2HYL7|Q2HYL7_ICTPU Keratin 18 (Fragment) OS=Ictalurus punctatus
           PE=2 SV=1
          Length = 228

 Score = 37.7 bits (86), Expect = 0.51
 Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
 Frame = +2

Query: 305 GSDEKLDDSEVLRLIMQQE-----EELQMLRTKHEEAISDLKMRITQDATLRIDKAAPKD 469
           G  + +DD+ V R+ ++ E     EEL  L+  H++ + DL+ +ITQ   +++D  APK 
Sbjct: 16  GLGKVIDDTNVNRMNVESELEALKEELLFLKKNHDDEVGDLRNQITQSG-VQVDVDAPKG 74

Query: 470 SSICKISGEV 499
             +  +  E+
Sbjct: 75  QDLSHVMEEM 84


>tr|A9BCI3|A9BCI3_PROM4 N utilization substance protein A
           OS=Prochlorococcus marinus (strain MIT 9211) GN=nusA
           PE=4 SV=1
          Length = 471

 Score = 37.4 bits (85), Expect = 0.67
 Identities = 25/80 (31%), Positives = 40/80 (50%)
 Frame = +2

Query: 311 DEKLDDSEVLRLIMQQEEELQMLRTKHEEAISDLKMRITQDATLRIDKAAPKDSSICKIS 490
           D++ +DS V  LI Q+EEE  + R   E   ++   R  +DA LR     P+D       
Sbjct: 379 DQESEDSAVAELISQREEEESLQREAEERLAAEQAARAEEDARLRELYPLPEDDE----- 433

Query: 491 GEVLQMSRSQDESQPDAESE 550
            E ++ S ++ E  P +E+E
Sbjct: 434 -ENIEESTTELEELPISENE 452


>tr|B2RA03|B2RA03_HUMAN cDNA, FLJ94640, highly similar to Homo
           sapiens keratin 18 (KRT18), mRNA OS=Homo sapiens PE=2
           SV=1
          Length = 430

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +2

Query: 305 GSDEKLDDSEVLRLIMQQE-----EELQMLRTKHEEAISDLKMRITQDATLRIDKAAPKD 469
           G  + +DD+ + RL ++ E     EEL  ++  HEE +  L+ +I     L ++  APK 
Sbjct: 184 GLRKVIDDTNITRLQLETEIEALKEELLFMKKNHEEEVKGLQAQIASSG-LTVEVDAPKS 242

Query: 470 SSICKISGEV 499
             + KI  ++
Sbjct: 243 QDLAKIMADI 252


>tr|Q73RB9|Q73RB9_TREDE Nuclease SbcCD, C subunit, putative
           OS=Treponema denticola GN=TDE_0171 PE=4 SV=1
          Length = 1030

 Score = 35.8 bits (81), Expect = 1.9
 Identities = 27/124 (21%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
 Frame = +2

Query: 194 TTHSLEFVETEAKLDSLPWRQSGVD-EVEFKEGHFMRLGS--DEKLDDSEVLRLIMQQEE 364
           T  +LE +  E   DS P ++ G + E+E  + ++ ++    +EK+ + E  +++ +++E
Sbjct: 202 TQDALEALGKEFDADSYPSKKEGFEKEIELIKKNYNKISKKIEEKISEKEQAKVLKEKKE 261

Query: 365 ELQMLRTKHEEAISDL-KMRITQDATLRIDKAAPKDSSICKISGEVLQMSRSQDESQPDA 541
           EL  ++T+ E   +   ++ + ++A  +  +AA    S+  ++  V ++  +  E + D 
Sbjct: 262 ELVTIKTRLENLNAHKEEIGLMEEAVEKARRAA----SLAALADSVSKLKNNIAEYKTDI 317

Query: 542 ESEI 553
           E +I
Sbjct: 318 EKKI 321


>tr|Q6BDL5|Q6BDL5_FELCA Keratin 18 (Fragment) OS=Felis silvestris
           catus PE=2 SV=1
          Length = 245

 Score = 35.8 bits (81), Expect = 1.9
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
 Frame = +2

Query: 305 GSDEKLDDSEVLRLIMQQE-----EELQMLRTKHEEAISDLKMRITQDATLRIDKAAPKD 469
           G  + +DD+ V RL ++ E     EEL  ++  HEE +  L+ +I  ++ L ++  APK 
Sbjct: 9   GLRKVIDDTNVTRLQLETEIEALKEELLFMKKNHEEEVKGLQNQIA-NSGLTVELDAPKS 67

Query: 470 SSICKISGEV 499
             + KI  ++
Sbjct: 68  QDLSKIMADI 77