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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948562
Clone id TST38A01NGRL0003_K08
Library
Length 672
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_K08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CAGATCAACAAAGCACAATGAGAGATTATTGAAGAGGGAGAGAGCTCGTGCAAAGGCCAC
AAAGACATCTCTTGCAGTGTCTGCTGCTAAAATAAGTAGCCTAAATACAAAAAATAGTAA
ATGTAAAGTACCTGTTTTGCAGCGCAGTACGCCGGATCCCATTCGCTCTTTTCTTGTGAG
CAATGGTTCTAGAAAGCCAAAAATCCTGACAGCTGCCGAGGAAGTGTTTCTCTCCAGTAA
GATTCAGGACCTTCTGGTTTTGAACGCTGCCAAGAAAGTACTACTGGAGCAGTTAGGAAG
GGAACCCACACTGGCTGAGTGGGCAGATTGTATGCACATGAAACTTGGTGAATTTTCAAG
TCGATTGACTGAGGACCAACGCTGCACGAACACAATGATTCAATGCAATTTGAGGCTTGT
CATTTCTGTGGCCAGAAAGTATGAGGGGAAAGGATTAAACATTGAAGATCTCATTCAGGA
AGGAAGTCAGGGGCTAATTCGAGGCTGTGAAAAATTTGATCCAAAGAAGGGTTGCAAATT
TTCAACATATGCACATTGGTGGATTATGCAGGCAATAACAAAGGCTCTGGTTCTGAAGTC
CCGGCTTCTTCGGTTACCTTCTCATGCGTCCGAAACCATGCTAACCATAAGAAGAGCCAA
GGATAATCTTCA
■■Homology search results ■■ -
sp_hit_id P38023
Definition sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus (strain PCC 7942)
Align length 180
Score (bit) 151.0
E-value 3.0e-36
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948562|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_K08, 5'
         (672 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1 OS=Synec...   151   3e-36
sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaen...   146   1e-34
sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2 OS=Synec...   144   5e-34
sp|Q03065|RPSB_ANASP RNA polymerase sigma-B factor OS=Anabaena s...   141   4e-33
sp|Q31QG5|RPOD3_SYNE7 RNA polymerase sigma factor rpoD3 OS=Synec...   126   1e-28
sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1 OS=Microc...   124   6e-28
sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD OS=Synecho...   123   8e-28
sp|Q03066|RPSC_ANASP RNA polymerase sigma-C factor OS=Anabaena s...   117   7e-26
sp|Q59996|RPSC_SYNY3 Probable RNA polymerase sigma-C factor OS=S...   113   8e-25
sp|Q31QR8|RPOD4_SYNE7 RNA polymerase sigma factor rpoD4 OS=Synec...   113   1e-24
sp|P77951|HRDB_STRGR RNA polymerase principal sigma factor hrdB ...   112   1e-24
sp|P18183|HRDB_STRCO RNA polymerase principal sigma factor hrdB ...   111   3e-24
sp|P0A602|RPOD_MYCTU RNA polymerase sigma factor rpoD OS=Mycobac...   109   1e-23
sp|P0A603|RPOD_MYCBO RNA polymerase sigma factor rpoD OS=Mycobac...   109   1e-23
sp|P18249|HRDD_STRCO RNA polymerase principal sigma factor hrdD ...   108   2e-23
sp|P52329|RPOD_ENTFA RNA polymerase sigma factor rpoD OS=Enteroc...   107   4e-23
sp|Q59914|HRDD_STRGR RNA polymerase principal sigma factor hrdD ...   107   7e-23
sp|P33118|RPSB_CORDI RNA polymerase sigma factor sigB OS=Coryneb...   106   1e-22
sp|P77994|RPOD_THEMA RNA polymerase sigma factor rpoD OS=Thermot...   106   1e-22
sp|Q60012|HRDD_STRVF RNA polymerase principal sigma factor hrdD ...   105   2e-22
sp|O66381|RPOD_BACHD RNA polymerase sigma factor rpoD OS=Bacillu...   104   4e-22
sp|P58290|RPOD_LACLC RNA polymerase sigma factor rpoD (Fragment)...   103   8e-22
sp|P52328|RPSD2_BACSP RNA polymerase sigma factor rpoD OS=Bacill...   103   1e-21
sp|Q04506|RPOD_LACLA RNA polymerase sigma factor rpoD OS=Lactoco...   103   1e-21
sp|P18333|RPOD_CHLTR RNA polymerase sigma factor rpoD OS=Chlamyd...   103   1e-21
sp|Q9Z7F0|RPOD_CHLPN RNA polymerase sigma factor rpoD OS=Chlamyd...   103   1e-21
sp|P56835|RPOD_CHLMU RNA polymerase sigma factor rpoD OS=Chlamyd...   103   1e-21
sp|P27785|RPOD_STRAU RNA polymerase sigma factor rpoD OS=Strepto...   102   2e-21
sp|Q8CP24|RPOD_STAES RNA polymerase sigma factor rpoD OS=Staphyl...   102   2e-21
sp|Q5HNY7|RPOD_STAEQ RNA polymerase sigma factor rpoD OS=Staphyl...   102   2e-21

>sp|P38023|RPOD1_SYNE7 RNA polymerase sigma factor rpoD1
           OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1
           PE=3 SV=2
          Length = 399

 Score =  151 bits (382), Expect = 3e-36
 Identities = 84/180 (46%), Positives = 112/180 (62%)
 Frame = +2

Query: 116 SKCKVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXXEQL 295
           +K K  V +  T D IR +L   G  + ++L A EE+ L+ +I D            EQL
Sbjct: 76  AKAKAKVRKTYTEDSIRLYLQEIG--RIRLLRADEEIELARQIADLLALERIRDELLEQL 133

Query: 296 GREPTLAEWADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLNIEDLI 475
            R P+ AEWA  +   L EF  RL   +R  + M+Q NLRLV+S+A+KY  +GL+ +DLI
Sbjct: 134 DRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 193

Query: 476 QEGSQGLIRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRR 655
           QEGS GLIR  EKFD +KG KFSTYA WWI QAIT+A+  +SR +RLP H  ET+  I++
Sbjct: 194 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 253


>sp|P26683|RPOD_ANASP RNA polymerase sigma factor rpoD OS=Anabaena
           sp. (strain PCC 7120) GN=rpoD PE=3 SV=1
          Length = 390

 Score =  146 bits (368), Expect = 1e-34
 Identities = 79/169 (46%), Positives = 108/169 (63%)
 Frame = +2

Query: 149 TPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXXEQLGREPTLAEWAD 328
           T D IR +L   G  + ++L A EE+ L+ KI D            E+L R+P  +EWA+
Sbjct: 78  TEDSIRLYLQEIG--RIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAE 135

Query: 329 CMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGC 508
            + + L  F  RL   +R  + M+Q NLRLV+S+A+KY  +GL+ +DLIQEGS GLIR  
Sbjct: 136 AVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAA 195

Query: 509 EKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRR 655
           EKFD +KG KFSTYA WWI QAIT+A+  +SR +RLP H  ET+  I++
Sbjct: 196 EKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 244


>sp|Q31ME3|RPOD2_SYNE7 RNA polymerase sigma factor rpoD2
           OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD2
           PE=1 SV=1
          Length = 320

 Score =  144 bits (362), Expect = 5e-34
 Identities = 71/174 (40%), Positives = 109/174 (62%)
 Frame = +2

Query: 149 TPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXXEQLGREPTLAEWAD 328
           +PD +R++L   G  + ++LTA EE+    ++Q             ++LG EP+  EWA 
Sbjct: 9   SPDLVRAYLQEIG--RVRLLTAEEELCFGRQVQRLMMLLDAQTELRDRLGHEPSKEEWAA 66

Query: 329 CMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRGC 508
            + + L +   ++ + QR    MI+ NLRLV+S+A+KY+ + +   DLIQEG+ GL RG 
Sbjct: 67  AVDLNLEDLDRQIEQGQRAKRKMIEANLRLVVSIAKKYQKRHMEFLDLIQEGTLGLERGV 126

Query: 509 EKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNL 670
           EKFDP KG KFSTYA+WWI QAIT+A+  +SR +RLP H +E +  +++ +  L
Sbjct: 127 EKFDPSKGYKFSTYAYWWIRQAITRAIAQQSRTIRLPIHITEKLNKLKKTQREL 180


>sp|Q03065|RPSB_ANASP RNA polymerase sigma-B factor OS=Anabaena sp.
           (strain PCC 7120) GN=sigB PE=3 SV=1
          Length = 332

 Score =  141 bits (355), Expect = 4e-33
 Identities = 76/191 (39%), Positives = 113/191 (59%)
 Frame = +2

Query: 80  SAAKISSLNTKNSKCKVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXX 259
           S ++++ L +KN++         T D +  +L   G  +  +L+  +E+F + ++Q    
Sbjct: 4   STSQVTKLKSKNNEFSY------TADAVSIYLHKIG--RVPLLSHEQEIFFAQQVQQMMV 55

Query: 260 XXXXXXXXXEQLGREPTLAEWADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARK 439
                    E+L REPTL EWAD M +K      +L++ Q     MIQ NLRLV+S+A+K
Sbjct: 56  MFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQGQIAKQKMIQANLRLVVSIAKK 115

Query: 440 YEGKGLNIEDLIQEGSQGLIRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLP 619
           Y+ + L   DLIQEG+ GL RG EKFDP  G KFSTYA+WWI Q IT+A+  +SR +RLP
Sbjct: 116 YQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWWIRQGITRAIAQQSRTIRLP 175

Query: 620 SHASETMLTIR 652
            H ++ +  I+
Sbjct: 176 IHMADKLNKIK 186


>sp|Q31QG5|RPOD3_SYNE7 RNA polymerase sigma factor rpoD3
           OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD3
           PE=3 SV=1
          Length = 320

 Score =  126 bits (316), Expect = 1e-28
 Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 1/175 (0%)
 Frame = +2

Query: 149 TPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXXEQLG-REPTLAEWA 325
           T D +R++L   G  +  +LT  EEV L  ++Q              + G R+P+  EWA
Sbjct: 8   TSDLVRTYLREIG--RVPLLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWA 65

Query: 326 DCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLIRG 505
               + + E   +    ++    MI+ NLRLV+SVA+KY  + +++ DLIQEG+ G+ RG
Sbjct: 66  AAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRG 125

Query: 506 CEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNL 670
            EKFDP KG +FSTYA+WWI QAIT+A+  K+R +RLP H +E +  I++ +  L
Sbjct: 126 VEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQL 180


>sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1
           OS=Microcystis aeruginosa GN=rpoD1 PE=3 SV=1
          Length = 416

 Score =  124 bits (310), Expect = 6e-28
 Identities = 62/117 (52%), Positives = 78/117 (66%)
 Frame = +2

Query: 305 PTLAEWADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLNIEDLIQEG 484
           P L EW       L  F  RL   +R    M+Q NLRLV+S+A+KY  +GL+ +DLIQEG
Sbjct: 154 PLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEG 213

Query: 485 SQGLIRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRR 655
           S GLIR  EKFD +KG KFSTYA WWI QAIT+A+  +SR +RLP H  ET+  I++
Sbjct: 214 SLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 270


>sp|P74565|RPOD_SYNY3 RNA polymerase sigma factor rpoD
           OS=Synechocystis sp. (strain PCC 6803) GN=rpoD PE=3 SV=1
          Length = 425

 Score =  123 bits (309), Expect = 8e-28
 Identities = 60/113 (53%), Positives = 79/113 (69%)
 Frame = +2

Query: 317 EWADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGL 496
           EW+   +     F  RL  D+R  + M+Q NLRLV+S+A+KY  +GL+ +DLIQEGS GL
Sbjct: 167 EWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGL 226

Query: 497 IRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRR 655
           IR  EKFD +KG KFSTYA WWI QAIT+A+  +SR +RLP H  ET+  I++
Sbjct: 227 IRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 279


>sp|Q03066|RPSC_ANASP RNA polymerase sigma-C factor OS=Anabaena sp.
           (strain PCC 7120) GN=sigC PE=3 SV=2
          Length = 416

 Score =  117 bits (292), Expect = 7e-26
 Identities = 57/124 (45%), Positives = 82/124 (66%), Gaps = 4/124 (3%)
 Frame = +2

Query: 302 EPTLAE----WADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLNIED 469
           +P L+E    WA+   M + E     ++  +    MI+ NLRLV+SVA+KY+ +GL + D
Sbjct: 146 KPILSEGKRRWAEIAKMTVEELEKMQSQGLQSKEHMIKANLRLVVSVAKKYQNRGLELLD 205

Query: 470 LIQEGSQGLIRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTI 649
           L+QEG+ GL R  EKFDP KG +FSTYA+WWI Q IT+A+   SR +RLP H +E +  I
Sbjct: 206 LVQEGTLGLERAVEKFDPTKGYRFSTYAYWWIRQGITRAIATSSRTIRLPVHITEKLNKI 265

Query: 650 RRAK 661
           ++A+
Sbjct: 266 KKAQ 269


>sp|Q59996|RPSC_SYNY3 Probable RNA polymerase sigma-C factor
           OS=Synechocystis sp. (strain PCC 6803) GN=sigC PE=3 SV=1
          Length = 404

 Score =  113 bits (283), Expect = 8e-25
 Identities = 54/114 (47%), Positives = 78/114 (68%)
 Frame = +2

Query: 320 WADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGLI 499
           WA+   + + E  +   +       MI+ NLRLV+SVA+KY+ +GL + DLIQEG+ GL 
Sbjct: 144 WAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLE 203

Query: 500 RGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAK 661
           R  EKFDP KG +FSTY++WWI Q IT+A+  +SR++RLP H +E +  I+RA+
Sbjct: 204 RAVEKFDPTKGYRFSTYSYWWIRQGITRAIATQSRMIRLPVHITEKLNKIKRAQ 257


>sp|Q31QR8|RPOD4_SYNE7 RNA polymerase sigma factor rpoD4
           OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD4
           PE=3 SV=1
          Length = 311

 Score =  113 bits (282), Expect = 1e-24
 Identities = 73/185 (39%), Positives = 101/185 (54%)
 Frame = +2

Query: 101 LNTKNSKCKVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXX 280
           +N +  +     ++R T D +  +L S G  +  +LTA EEV LS K+Q           
Sbjct: 1   MNVQERRNLNAAVERHTSDHVSWYLSSIG--RIPLLTAEEEVELSRKVQLMM-------- 50

Query: 281 XXEQLGREPTLAEWADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLN 460
                     L E  D       E  + L   QR    M++ NLRLV+SVA+KY+ +GL 
Sbjct: 51  ---------ALLENPDAESNS--ENQAVLQAGQRAKTKMLKANLRLVVSVAKKYQNQGLE 99

Query: 461 IEDLIQEGSQGLIRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETM 640
           + DLIQEGS GL R  EKFDP  G KFSTYA+WWI Q++T+A+   +R +RLP H SE +
Sbjct: 100 LLDLIQEGSLGLERAVEKFDPALGYKFSTYAYWWIRQSMTRAIDNHARTIRLPIHVSEKI 159

Query: 641 LTIRR 655
             I++
Sbjct: 160 SRIKK 164
tr_hit_id A9RTR4
Definition tr|A9RTR4|A9RTR4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 184
Score (bit) 167.0
E-value 7.0e-40
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948562|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_K08, 5'
         (672 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RTR4|A9RTR4_PHYPA Predicted protein OS=Physcomitrella paten...   167   7e-40
tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens GN=Sig2 P...   165   2e-39
tr|A9RXT3|A9RXT3_PHYPA Plastid sigma facor SIG2 OS=Physcomitrell...   165   2e-39
tr|A9RTR6|A9RTR6_PHYPA Predicted protein OS=Physcomitrella paten...   160   5e-38
tr|O22455|O22455_ARATH Sigma factor 2 OS=Arabidopsis thaliana GN...   157   4e-37
tr|Q8GWC1|Q8GWC1_ARATH Putative plastid RNA polymerase sigma-sub...   152   2e-35
tr|O22056|O22056_ARATH Plastid RNA polymerase sigma-subunit (At1...   152   2e-35
tr|B7JX54|B7JX54_SYNP8 RNA polymerase, sigma 70 subunit, RpoD su...   151   3e-35
tr|B4BWT8|B4BWT8_9CHRO RNA polymerase, sigma 70 subunit, RpoD fa...   151   3e-35
tr|Q5N3Q1|Q5N3Q1_SYNP6 RNA polymerase sigma factor OS=Synechococ...   151   4e-35
tr|B4WPM0|B4WPM0_9SYNE RNA polymerase sigma factor, cyanobacteri...   150   5e-35
tr|Q9MTH3|Q9MTH3_SINAL Sigma factor 2 OS=Sinapis alba GN=sig2 PE...   150   5e-35
tr|Q10UV2|Q10UV2_TRIEI RNA polymerase sigma factor OS=Trichodesm...   149   1e-34
tr|B5VWQ7|B5VWQ7_SPIMA RNA polymerase, sigma 70 subunit, RpoD fa...   149   2e-34
tr|A0ZJC3|A0ZJC3_NODSP RNA polymerase sigma factor OS=Nodularia ...   149   2e-34
tr|Q9L4T2|Q9L4T2_NOSP7 RNA polymerase sigma factor OS=Nostoc pun...   148   3e-34
tr|B1X0Q3|B1X0Q3_CYAA5 Group 2 sigma-70 RNA polymerase sigma fac...   148   3e-34
tr|B0CDC4|B0CDC4_ACAM1 RNA polymerase sigma-70 factor OS=Acaryoc...   147   5e-34
tr|B4W0Y8|B4W0Y8_9CYAN RNA polymerase sigma factor, cyanobacteri...   147   6e-34
tr|B8LQB0|B8LQB0_PICSI Putative uncharacterized protein OS=Picea...   147   6e-34
tr|B8LLW6|B8LLW6_PICSI Putative uncharacterized protein OS=Picea...   147   6e-34
tr|Q59965|Q59965_SYNP2 RNA polymerase sigma factor OS=Synechococ...   147   8e-34
tr|B7KDV7|B7KDV7_9CHRO RNA polymerase, sigma 70 subunit, RpoD su...   147   8e-34
tr|B4AUJ5|B4AUJ5_9CHRO RNA polymerase, sigma 70 subunit, RpoD fa...   147   8e-34
tr|Q3MDA3|Q3MDA3_ANAVT RNA polymerase sigma factor OS=Anabaena v...   146   1e-33
tr|Q4C529|Q4C529_CROWT Sigma-70 region 3:Sigma-70 region 2:Sigma...   145   2e-33
tr|B0C249|B0C249_ACAM1 RNA polymerase sigma-70 factor OS=Acaryoc...   145   3e-33
tr|B8HPM3|B8HPM3_9CHRO RNA polymerase, sigma 70 subunit, RpoD su...   144   4e-33
tr|B7K1V2|B7K1V2_SYNP8 RNA polymerase, sigma 70 subunit, RpoD su...   144   4e-33
tr|B4BYZ0|B4BYZ0_9CHRO RNA polymerase, sigma 70 subunit, RpoD fa...   144   4e-33

>tr|A9RTR4|A9RTR4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160930 PE=4 SV=1
          Length = 591

 Score =  167 bits (422), Expect = 7e-40
 Identities = 85/184 (46%), Positives = 118/184 (64%), Gaps = 2/184 (1%)
 Frame = +2

Query: 125 KVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQ--DXXXXXXXXXXXXEQLG 298
           K P + +   DP+R++L   G  K K+LTA+EEV LS KIQ  D             ++G
Sbjct: 264 KKPQISQEPTDPVRAYLRDIG--KTKLLTASEEVALSRKIQARDLLVLEKVKSDLQREIG 321

Query: 299 REPTLAEWADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLNIEDLIQ 478
           REP++ EW+  + M+   F  R+ E +   + M+  NLRLV+S+ + Y+G+G+ + DLIQ
Sbjct: 322 REPSIGEWSRAVGMEQNAFELRVKEGRYSKDKMVNSNLRLVVSIVKNYQGRGMTLPDLIQ 381

Query: 479 EGSQGLIRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRA 658
           EGS GLIRG EKFDP KG KFSTYAHWWI QA+T+A+  +SR++RLP H  E +  I +A
Sbjct: 382 EGSMGLIRGAEKFDPDKGFKFSTYAHWWIRQAVTRAIADQSRIIRLPIHLYEVISRINKA 441

Query: 659 KDNL 670
           K  L
Sbjct: 442 KKML 445


>tr|Q9AYR7|Q9AYR7_PHYPA PpSIG2 OS=Physcomitrella patens GN=Sig2 PE=2
           SV=1
          Length = 579

 Score =  165 bits (418), Expect = 2e-39
 Identities = 82/181 (45%), Positives = 116/181 (64%)
 Frame = +2

Query: 119 KCKVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXXEQLG 298
           K K P L     DP+R++L   G  + K+LTA EEV LS +IQD             ++G
Sbjct: 250 KPKKPQLAADPSDPVRAYLRDIG--RTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIG 307

Query: 299 REPTLAEWADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLNIEDLIQ 478
           R  T+ EW+  + M+   F +RL + +   + M+  NLRLV+S+A+ Y+G+G+ ++DLIQ
Sbjct: 308 RNATIGEWSRAVGMEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQ 367

Query: 479 EGSQGLIRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRA 658
           EGS GL+RG EKFDP KG KFSTYAHWWI QA+T+++  +SR +RLP H  E +  I +A
Sbjct: 368 EGSMGLVRGAEKFDPTKGFKFSTYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKA 427

Query: 659 K 661
           K
Sbjct: 428 K 428


>tr|A9RXT3|A9RXT3_PHYPA Plastid sigma facor SIG2 OS=Physcomitrella
           patens subsp. patens GN=PpSig2 PE=4 SV=1
          Length = 579

 Score =  165 bits (418), Expect = 2e-39
 Identities = 82/181 (45%), Positives = 116/181 (64%)
 Frame = +2

Query: 119 KCKVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXXEQLG 298
           K K P L     DP+R++L   G  + K+LTA EEV LS +IQD             ++G
Sbjct: 250 KPKKPQLAADPSDPVRAYLRDIG--RTKLLTAREEVDLSHQIQDLLKLENIKSNLEREIG 307

Query: 299 REPTLAEWADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLNIEDLIQ 478
           R  T+ EW+  + M+   F +RL + +   + M+  NLRLV+S+A+ Y+G+G+ ++DLIQ
Sbjct: 308 RNATIGEWSRAVGMEQNAFEARLKKGRFAKDKMVNSNLRLVVSIAKNYQGRGMTLQDLIQ 367

Query: 479 EGSQGLIRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRA 658
           EGS GL+RG EKFDP KG KFSTYAHWWI QA+T+++  +SR +RLP H  E +  I +A
Sbjct: 368 EGSMGLVRGAEKFDPTKGFKFSTYAHWWIRQAVTRSIADQSRTIRLPIHLYEVISRINKA 427

Query: 659 K 661
           K
Sbjct: 428 K 428


>tr|A9RTR6|A9RTR6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_178031 PE=4 SV=1
          Length = 583

 Score =  160 bits (406), Expect = 5e-38
 Identities = 79/175 (45%), Positives = 113/175 (64%)
 Frame = +2

Query: 137 LQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXXEQLGREPTLA 316
           + R+  DPIRS+L     ++ K+L+A+EEV LS KIQD              +GREPTL+
Sbjct: 263 IMRTPSDPIRSYL--RDIKRTKLLSASEEVALSRKIQDILKLEKIRAELQRDIGREPTLS 320

Query: 317 EWADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGL 496
           EW+  + +       R+ E +   + ++  NLRLV+S+ + Y+G+G+ + DLIQEGS GL
Sbjct: 321 EWSQAVSLDQTSLELRVKEGRSAKDKLVNSNLRLVVSIVKNYQGRGMTLPDLIQEGSLGL 380

Query: 497 IRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAK 661
           IRG EKFDP+ G KFSTYA WWI QA+T+A+  +SR++RLP H  E +  I +AK
Sbjct: 381 IRGAEKFDPEMGYKFSTYATWWIRQAVTRAIADQSRIIRLPVHIYEVISRINKAK 435


>tr|O22455|O22455_ARATH Sigma factor 2 OS=Arabidopsis thaliana
           GN=SIG2 PE=2 SV=1
          Length = 574

 Score =  157 bits (398), Expect = 4e-37
 Identities = 83/202 (41%), Positives = 120/202 (59%), Gaps = 2/202 (0%)
 Frame = +2

Query: 71  LAVSAAKISSLNTKNSKCKVPVLQRSTP--DPIRSFLVSNGSRKPKILTAAEEVFLSSKI 244
           L  +A+ I S+ T +S  K  ++ +     DP+R   ++  S K K+LT  EE  LS+ I
Sbjct: 228 LEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLKLLTVREEHELSAGI 287

Query: 245 QDXXXXXXXXXXXXEQLGREPTLAEWADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVI 424
           QD            E+ GR+PT A+WA    +       R+     C + MI+ N+RLVI
Sbjct: 288 QDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVI 347

Query: 425 SVARKYEGKGLNIEDLIQEGSQGLIRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSR 604
           S+A+ Y+G G+N++DL+QEG +GL+RG EKFD  KG KFSTYAHWWI QA+ K+L  +SR
Sbjct: 348 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 407

Query: 605 LLRLPSHASETMLTIRRAKDNL 670
           ++RLP H  E    ++ A+  L
Sbjct: 408 MIRLPFHMVEATYRVKEARKQL 429


>tr|Q8GWC1|Q8GWC1_ARATH Putative plastid RNA polymerase
           sigma-subunit SIG1 OS=Arabidopsis thaliana
           GN=At1g08540/F22O13_2 PE=2 SV=1
          Length = 572

 Score =  152 bits (383), Expect = 2e-35
 Identities = 82/202 (40%), Positives = 119/202 (58%), Gaps = 2/202 (0%)
 Frame = +2

Query: 71  LAVSAAKISSLNTKNSKCKVPVLQRSTP--DPIRSFLVSNGSRKPKILTAAEEVFLSSKI 244
           L  +A+ I S+ T +S  K  ++ +     DP+R   ++  S K  +LT  EE  LS+ I
Sbjct: 228 LEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSAGI 285

Query: 245 QDXXXXXXXXXXXXEQLGREPTLAEWADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVI 424
           QD            E+ GR+PT A+WA    +       R+     C + MI+ N+RLVI
Sbjct: 286 QDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVI 345

Query: 425 SVARKYEGKGLNIEDLIQEGSQGLIRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSR 604
           S+A+ Y+G G+N++DL+QEG +GL+RG EKFD  KG KFSTYAHWWI QA+ K+L  +SR
Sbjct: 346 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 405

Query: 605 LLRLPSHASETMLTIRRAKDNL 670
           ++RLP H  E    ++ A+  L
Sbjct: 406 MIRLPFHMVEATYRVKEARKQL 427


>tr|O22056|O22056_ARATH Plastid RNA polymerase sigma-subunit
           (At1g08540) (Sigma factor) (T27G7.22) (F22O13.2) (Sigma
           factor SigB) (SigB) OS=Arabidopsis thaliana GN=SIG1 PE=2
           SV=2
          Length = 572

 Score =  152 bits (383), Expect = 2e-35
 Identities = 82/202 (40%), Positives = 119/202 (58%), Gaps = 2/202 (0%)
 Frame = +2

Query: 71  LAVSAAKISSLNTKNSKCKVPVLQRSTP--DPIRSFLVSNGSRKPKILTAAEEVFLSSKI 244
           L  +A+ I S+ T +S  K  ++ +     DP+R   ++  S K  +LT  EE  LS+ I
Sbjct: 228 LEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSK--LLTVREEHELSAGI 285

Query: 245 QDXXXXXXXXXXXXEQLGREPTLAEWADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVI 424
           QD            E+ GR+PT A+WA    +       R+     C + MI+ N+RLVI
Sbjct: 286 QDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMIKSNIRLVI 345

Query: 425 SVARKYEGKGLNIEDLIQEGSQGLIRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSR 604
           S+A+ Y+G G+N++DL+QEG +GL+RG EKFD  KG KFSTYAHWWI QA+ K+L  +SR
Sbjct: 346 SIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSR 405

Query: 605 LLRLPSHASETMLTIRRAKDNL 670
           ++RLP H  E    ++ A+  L
Sbjct: 406 MIRLPFHMVEATYRVKEARKQL 427


>tr|B7JX54|B7JX54_SYNP8 RNA polymerase, sigma 70 subunit, RpoD
           subfamily OS=Synechococcus sp. (strain PCC 8801 / RF-1)
           GN=PCC8801_3061 PE=4 SV=1
          Length = 318

 Score =  151 bits (382), Expect = 3e-35
 Identities = 76/178 (42%), Positives = 113/178 (63%)
 Frame = +2

Query: 137 LQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXXEQLGREPTLA 316
           + +S+PDP+R++L   G  +  +LT  EE+  + ++Q             E+LG+EPT+A
Sbjct: 3   VSKSSPDPVRAYLREIG--RVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIA 60

Query: 317 EWADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGL 496
           +WA    M   E  S +   +     M++ NLRLV+SVA+KY  + L++ DLIQEG+ G+
Sbjct: 61  QWAKAAKMTQKELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGM 120

Query: 497 IRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNL 670
            RG EKFDP KG +FSTYA+WWI QAIT+A+  KSR +RLP H +E +  I++A+  L
Sbjct: 121 QRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQL 178


>tr|B4BWT8|B4BWT8_9CHRO RNA polymerase, sigma 70 subunit, RpoD
           family OS=Cyanothece sp. PCC 8802 GN=Cyan8802DRAFT_1042
           PE=4 SV=1
          Length = 318

 Score =  151 bits (382), Expect = 3e-35
 Identities = 76/178 (42%), Positives = 113/178 (63%)
 Frame = +2

Query: 137 LQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXXEQLGREPTLA 316
           + +S+PDP+R++L   G  +  +LT  EE+  + ++Q             E+LG+EPT+A
Sbjct: 3   VSKSSPDPVRAYLREIG--RVPLLTHEEEILYAKRVQRFVALETLKESLTEELGQEPTIA 60

Query: 317 EWADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLNIEDLIQEGSQGL 496
           +WA    M   E  S +   +     M++ NLRLV+SVA+KY  + L++ DLIQEG+ G+
Sbjct: 61  QWAKAAKMTQKELRSAIEAGEAAKRKMVEANLRLVVSVAKKYLKRNLDLLDLIQEGTIGM 120

Query: 497 IRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRRAKDNL 670
            RG EKFDP KG +FSTYA+WWI QAIT+A+  KSR +RLP H +E +  I++A+  L
Sbjct: 121 QRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQL 178


>tr|Q5N3Q1|Q5N3Q1_SYNP6 RNA polymerase sigma factor OS=Synechococcus
           sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
           GN=rpoD1 PE=3 SV=1
          Length = 399

 Score =  151 bits (381), Expect = 4e-35
 Identities = 84/180 (46%), Positives = 112/180 (62%)
 Frame = +2

Query: 116 SKCKVPVLQRSTPDPIRSFLVSNGSRKPKILTAAEEVFLSSKIQDXXXXXXXXXXXXEQL 295
           +K K  V +  T D IR +L   G  + ++L A EE+ L+ +I D            EQL
Sbjct: 76  AKAKAKVPKTYTEDSIRLYLQEIG--RIRLLRADEEIELARQIADLLALERIRDELLEQL 133

Query: 296 GREPTLAEWADCMHMKLGEFSSRLTEDQRCTNTMIQCNLRLVISVARKYEGKGLNIEDLI 475
            R P+ AEWA  +   L EF  RL   +R  + M+Q NLRLV+S+A+KY  +GL+ +DLI
Sbjct: 134 DRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLI 193

Query: 476 QEGSQGLIRGCEKFDPKKGCKFSTYAHWWIMQAITKALVLKSRLLRLPSHASETMLTIRR 655
           QEGS GLIR  EKFD +KG KFSTYA WWI QAIT+A+  +SR +RLP H  ET+  I++
Sbjct: 194 QEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKK 253