NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948565
Clone id TST38A01NGRL0003_K11
Library
Length 635
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_K11. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CTCACACACACACAGACACACACACACACGCCCGCGCGCGCACTCTGCAGGCTGGAGGAC
TTGTGTATAGTACTGTGTAGATCTCTCTCTCGCCCCTCCCCCCACATACACACGAAGACA
GAAGACTTCTCGTGTATAGTGTATCAGATCTCTGCGCCCCCCTCCCCCCCCCTCTCTCTC
TCTCTCTCTCTCCTCTGTGTGTACAGTTCTCTTCTCCTGGCATTTTAATTTGACAGAAAA
TCTATTCTTATTTATTTCACGCGGTTCCGCTCCTCCATCGCTTAGAGAACCCGGGGTTTC
CAGCTGCCGTGCAGCTTCAGAGCATTGGGCCAACTTGAAAATTTCATGTGTTGCACATGT
TAGACTCAGAGGCGTCAAAGTCGAGCAGGAGAAAGTTGAAGCAGGGAGGAAAAGAGGGTA
GAGATTTGAGGAAGACGAGGGGGAGCAGCACATGGCCTCTGTGAGTGGAGGAGGAGGAGC
CAGAAAGCCTATTATCAGCTCAAGTGTCACAGCTGGCCGAGACGCATACTACCTGCGGAA
AGAAATGAATGACATGAAGGTCAGAGATGATCGGAGTACTGACGTAAGCGATGACAAGGA
AATTGAGGCCGCTGTGGTAAATGGTAATGGAGCTG
■■Homology search results ■■ -
sp_hit_id Q9D7I0
Definition sp|Q9D7I0|SHSA5_MOUSE Protein shisa-5 OS=Mus musculus
Align length 82
Score (bit) 33.1
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948565|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_K11, 5'
         (635 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9D7I0|SHSA5_MOUSE Protein shisa-5 OS=Mus musculus GN=Shisa5 ...    33   1.2  
sp|Q9P7X5|PPK32_SCHPO Protein kinase domain-containing protein p...    32   2.1  
sp|P03204|EBNA6_EBV Epstein-Barr nuclear antigen 6 OS=Epstein-Ba...    32   2.1  
sp|Q1ECW2|NPAS4_DANRE Neuronal PAS domain-containing protein 4 O...    31   4.7  
sp|Q9EPH1|A1BG_RAT Alpha-1B-glycoprotein OS=Rattus norvegicus GN...    31   4.7  
sp|Q19LI2|A1BG_MOUSE Alpha-1B-glycoprotein OS=Mus musculus GN=A1...    31   4.7  
sp|Q9BXC0|GPR81_HUMAN Probable G-protein coupled receptor 81 OS=...    30   8.0  
sp|P43555|EMP47_YEAST Protein EMP47 OS=Saccharomyces cerevisiae ...    30   8.0  

>sp|Q9D7I0|SHSA5_MOUSE Protein shisa-5 OS=Mus musculus GN=Shisa5
           PE=2 SV=1
          Length = 235

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = -3

Query: 525 ASRPAVTLELIIGFLAPPPPLTEAMCCSPSSSSNLYPLFLPASTFSCSTLTPLSLTCATH 346
           A  P++   L++  L PPPP      C P    N  P+F P   F C + +  +  C + 
Sbjct: 3   APAPSLWTLLLLLLLLPPPPGAHGELCRPFGEDNSIPVFCP--DFCCGSCS--NQYCCSD 58

Query: 345 EIFKL----AQCSEAARQLETP 292
            + K+      C E   +  TP
Sbjct: 59  VLRKIQWNEEMCPEPESRFSTP 80


>sp|Q9P7X5|PPK32_SCHPO Protein kinase domain-containing protein
           ppk32 OS=Schizosaccharomyces pombe GN=ppk32 PE=1 SV=1
          Length = 749

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 525 ASRPAVTLELIIGFLAPPPPLTEAMCCSPSSSSNLYPLFLPA 400
           AS PAVT +    +  P   L+     +PSSS++LYP  +P+
Sbjct: 669 ASTPAVTAKSSFHYATPTSGLSNFNSVTPSSSASLYPPLIPS 710


>sp|P03204|EBNA6_EBV Epstein-Barr nuclear antigen 6 OS=Epstein-Barr
            virus (strain B95-8) GN=EBNA6 PE=1 SV=1
          Length = 992

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 23/78 (29%), Positives = 32/78 (41%)
 Frame = -3

Query: 486  FLAPPPPLTEAMCCSPSSSSNLYPLFLPASTFSCSTLTPLSLTCATHEIFKLAQCSEAAR 307
            F  PP PL ++M     SS    P    AS +S    TPL +   T +  ++ + S    
Sbjct: 893  FPPPPMPLQDSMAVGCDSSGTACPSMPFASDYSQGAFTPLDINATTPKRPRVEESSHG-- 950

Query: 306  QLETPGSLSDGGAEPREI 253
                P   S   AE +EI
Sbjct: 951  ----PARCSQATAEAQEI 964


>sp|Q1ECW2|NPAS4_DANRE Neuronal PAS domain-containing protein 4
           OS=Danio rerio GN=npas4 PE=2 SV=1
          Length = 933

 Score = 31.2 bits (69), Expect = 4.7
 Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
 Frame = -3

Query: 474 PPPL--------TEAMCCSPSSSSNLYPLFLPASTFSCSTLTPLSLTCATHEI-FKLAQC 322
           PPPL        T A   SPS+ SN      P  T + S+L PL++T  T EI F +  C
Sbjct: 534 PPPLGQTATVTTTTAPSLSPSAPSNPQS-SPPPPTTTLSSLLPLTITSPTTEILFPVEPC 592

Query: 321 SEAARQL--ETPGSLSDG 274
           S +  +    TP S  DG
Sbjct: 593 SGSLYEKLPPTPDSPGDG 610


>sp|Q9EPH1|A1BG_RAT Alpha-1B-glycoprotein OS=Rattus norvegicus
           GN=A1bg PE=2 SV=2
          Length = 513

 Score = 31.2 bits (69), Expect = 4.7
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +2

Query: 203 TVLFSWHFNLTENLFLFISRGSAPPSLREPGVSSCRAASEHWANLKISC 349
           TVL  W F L     L++  GS P    EP     ++  E WANL + C
Sbjct: 6   TVLLLWGFTLGPGNALWLDSGSEPELRAEP-----QSLLEPWANLTLVC 49


>sp|Q19LI2|A1BG_MOUSE Alpha-1B-glycoprotein OS=Mus musculus GN=A1bg
           PE=1 SV=1
          Length = 512

 Score = 31.2 bits (69), Expect = 4.7
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +2

Query: 197 VCTVLFSWHFNLTENLFLFISRGSAPPSLREPGVSSCRAASEHWANLKISC 349
           + TVL  W F L     L +  GS P    EP     ++  E WANL + C
Sbjct: 4   LATVLLLWGFTLGPGNTLMLDSGSEPKLWAEP-----QSLLEPWANLTLVC 49


>sp|Q9BXC0|GPR81_HUMAN Probable G-protein coupled receptor 81
           OS=Homo sapiens GN=GPR81 PE=2 SV=1
          Length = 346

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -2

Query: 520 SASCDT*ADNRLSGSSSSTHRGHVLLPLVFLKSLPSFPPCFNFL 389
           S++CD      L  + S T+   +L PLV+  S PSFP  +N L
Sbjct: 249 SSACDPSVHGALHITLSFTYMNSMLDPLVYYFSSPSFPKFYNKL 292


>sp|P43555|EMP47_YEAST Protein EMP47 OS=Saccharomyces cerevisiae
           GN=EMP47 PE=1 SV=1
          Length = 445

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = +2

Query: 266 SAPPSLREPGVSSCRAASEHWANLKISCVAHVRLRGVKVEQEKVEAGRKR 415
           S PP+  E G S+  A +E   N K     + +L  V VEQEK     KR
Sbjct: 350 SKPPANNEKGTSTDDAIAEDKENFKDFLSINQKLEKVLVEQEKYREATKR 399
tr_hit_id A9U702
Definition tr|A9U702|A9U702_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 77
Score (bit) 36.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948565|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_K11, 5'
         (635 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9U702|A9U702_PHYPA Predicted protein (Fragment) OS=Physcomit...    36   1.7  
tr|B6KE50|B6KE50_TOXGO Protein kinase, putative OS=Toxoplasma go...    36   1.7  
tr|Q8X0L7|Q8X0L7_NEUCR Putative uncharacterized protein B11B23.0...    36   1.7  
tr|Q870W4|Q870W4_NEUCR Putative uncharacterized protein B14A21.0...    35   2.9  
tr|A9V654|A9V654_MONBE Predicted protein OS=Monosiga brevicollis...    27   3.8  
tr|Q7PJN2|Q7PJN2_ANOGA AGAP004666-PA (Fragment) OS=Anopheles gam...    35   3.8  
tr|Q4T491|Q4T491_TETNG Chromosome undetermined SCAF9779, whole g...    35   5.0  
tr|Q68AN0|Q68AN0_PSOTE ABI-3 homolog OS=Psophocarpus tetragonolo...    35   5.0  
tr|B6ED08|B6ED08_9ROSI Putative lacasse/diphenol oxidase OS=Cast...    35   5.0  
tr|B3MPJ3|B3MPJ3_DROAN GF14619 OS=Drosophila ananassae GN=GF1461...    35   5.0  
tr|Q2H647|Q2H647_CHAGB Putative uncharacterized protein OS=Chaet...    35   5.0  
tr|Q4T4P5|Q4T4P5_TETNG Chromosome undetermined SCAF9568, whole g...    30   5.4  
tr|A9UZY2|A9UZY2_MONBE Predicted protein OS=Monosiga brevicollis...    29   7.1  
tr|Q6K6K0|Q6K6K0_ORYSJ Putative uncharacterized protein P0047E05...    34   8.4  
tr|B6KGP1|B6KGP1_TOXGO DNA-dependent RNA polymerase, putative OS...    34   8.4  
tr|A3LMW0|A3LMW0_PICST Predicted protein (Fragment) OS=Pichia st...    34   8.4  

>tr|A9U702|A9U702_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_103630 PE=4 SV=1
          Length = 762

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 29/77 (37%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +2

Query: 293 GVSSCRAASEHWANLKISCVAHVRLRGVKVEQEKVEAGRKRG*RFEE-DEGEQHMASVSG 469
           G  SC    E      +  V      GV+VE++  E  R+ G   EE   G    ASV G
Sbjct: 342 GAGSCGVREEVGGRCSVEDVRGECSDGVEVEKQGGERLRRTGEGEEEVGRGPAREASVDG 401

Query: 470 GGGARKPIISSSVTAGR 520
           GGG   P + SSV AGR
Sbjct: 402 GGGNGSP-VRSSVEAGR 417


>tr|B6KE50|B6KE50_TOXGO Protein kinase, putative OS=Toxoplasma
           gondii ME49 GN=TGME49_024480 PE=4 SV=1
          Length = 1678

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 26/63 (41%), Positives = 32/63 (50%)
 Frame = -3

Query: 495 IIGFLAPPPPLTEAMCCSPSSSSNLYPLFLPASTFSCSTLTPLSLTCATHEIFKLAQCSE 316
           ++ F APPP  + A C  P SSS LYP FL A++ S + LT  S  CA      L   S 
Sbjct: 601 LLAFQAPPPHGSHAGCAVPYSSS-LYPPFLKANSASPALLT--SPLCAVPAAAALPAVSS 657

Query: 315 AAR 307
             R
Sbjct: 658 GCR 660


>tr|Q8X0L7|Q8X0L7_NEUCR Putative uncharacterized protein B11B23.080
           (Predicted protein) OS=Neurospora crassa GN=B11B23.080
           PE=4 SV=1
          Length = 527

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
 Frame = +2

Query: 230 LTENLFLFISRGSAPPSLREPGVSSCRAASEHWANLKI----SCVAHVRLRGVKVEQEKV 397
           LT  L+LF++   A  SL  P   SCR A E   ++      + +A V +     E +KV
Sbjct: 412 LTATLYLFLATADAWWSL--PASDSCREAREVMRSIAEKFLRNYLALVLICETNAEAQKV 469

Query: 398 EAGRKRG*RFEEDEGEQHMASVSGGG----GARKPIISSSVT 511
           E         E+ + EQH A  SG G    G  +P++   VT
Sbjct: 470 EELETNESEAEQPKAEQHKAEGSGAGESTPGDSEPVVEPLVT 511


>tr|Q870W4|Q870W4_NEUCR Putative uncharacterized protein B14A21.080
           (Putative uncharacterized protein) OS=Neurospora crassa
           GN=B14A21.080 PE=4 SV=1
          Length = 938

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
 Frame = -3

Query: 474 PPPLTEAMCCSPSSSSNLYPLFLPASTFSCSTL--TPLSLTCATH-------EIFKLAQC 322
           P   + + CC+ SSS+N   +  P ++   S+L  TP SLT +TH       E F L Q 
Sbjct: 784 PTSSSSSSCCTSSSSTNTLLVVPPTNSSGASSLVSTP-SLTTSTHEYDEYEYEYFDLHQF 842

Query: 321 SEAARQLETPG 289
           S AA +   PG
Sbjct: 843 SAAAPEATAPG 853


>tr|A9V654|A9V654_MONBE Predicted protein OS=Monosiga brevicollis
           GN=27731 PE=4 SV=1
          Length = 104

 Score = 26.6 bits (57), Expect(3) = 3.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 36  RGRVCVCLCVC 4
           +G VCVC+CVC
Sbjct: 79  KGNVCVCVCVC 89



 Score = 25.4 bits (54), Expect(3) = 3.8
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = -3

Query: 27  VCVCLCVCE 1
           VCVC+CVCE
Sbjct: 94  VCVCVCVCE 102



 Score = 21.2 bits (43), Expect(3) = 3.8
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 42 CARGRVCVCLC 10
          C   R+CVC+C
Sbjct: 65 CDGARMCVCVC 75


>tr|Q7PJN2|Q7PJN2_ANOGA AGAP004666-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP004666 PE=4 SV=2
          Length = 81

 Score = 35.0 bits (79), Expect = 3.8
 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = -3

Query: 102 GGGARERSTQYYTQVLQPAECARG----RVCVCLCVC 4
           GGG R+R  ++YT  +    C R     RVCVC+CVC
Sbjct: 27  GGGDRQR--RFYTFFIYAPSCVRACVHARVCVCVCVC 61


>tr|Q4T491|Q4T491_TETNG Chromosome undetermined SCAF9779, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00007436001 PE=4 SV=1
          Length = 774

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 17/34 (50%), Positives = 18/34 (52%)
 Frame = +1

Query: 7   HTQTHTHTPARALCRLEDLCIVLCRSLSRPSPHI 108
           HT THTHT   ALC         CRS  RPSP +
Sbjct: 146 HTHTHTHTHTHALC---------CRSRPRPSPPV 170


>tr|Q68AN0|Q68AN0_PSOTE ABI-3 homolog OS=Psophocarpus tetragonolobus
           GN=wbABI3 PE=2 SV=1
          Length = 751

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 20/38 (52%), Positives = 23/38 (60%)
 Frame = -3

Query: 486 FLAPPPPLTEAMCCSPSSSSNLYPLFLPASTFSCSTLT 373
           F A  PPL +  C S SSSS+  P  LPA T +CST T
Sbjct: 59  FYADFPPLPDFPCMSSSSSSSSAPP-LPAKTMACSTTT 95


>tr|B6ED08|B6ED08_9ROSI Putative lacasse/diphenol oxidase
           OS=Castanea mollissima PE=2 SV=1
          Length = 567

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
 Frame = -2

Query: 586 YVSTPIISDLHVIHFFPQVVCVSASCDT*ADNRLSGS----SSSTHRGHVL------LPL 437
           YV   + + + +     Q+VC +ASC   + NRLS S    S  T    VL      LP 
Sbjct: 351 YVPKNVTTRIFITVSVNQIVCANASCGGPSGNRLSASLNNISFVTPSTDVLQAYYKSLPN 410

Query: 436 VFLKSLPSFPPC-FNF 392
           VF K  P+ PP  FNF
Sbjct: 411 VFDKDFPNLPPYKFNF 426


>tr|B3MPJ3|B3MPJ3_DROAN GF14619 OS=Drosophila ananassae GN=GF14619
            PE=4 SV=1
          Length = 2240

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = -3

Query: 516  PAVTLELIIGFLAPPPPLTEAMCCSPSSSSNLYPLFLPASTFSCSTLTPLSL 361
            P VT   I      PP +TEA   +P+++  L P  LP  T    TL PL+L
Sbjct: 920  PVVTAAPIPPATVVPPQVTEAPTAAPTATPTLPPQTLPPQTLPPPTLPPLTL 971