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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948569
Clone id TST38A01NGRL0003_K16
Library
Length 655
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_K16. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CAGCCCACTTTCCAACATTTCAACTCTAGAAGTCCCCCAACTCCCATCATTTCGCAAGCC
ACACAACTTGACACAAGAAAGAGCTTTTATTTAGTCATCACACTCATCATCGTCTTCGTC
GTTGGCTGAGAGAGAGAGAGAGAGAGCGAGAGAGAGCCTTTTGTTTCTTGCCCTGTACTC
GACCTAACTGCTTCACTCGGTCTCTCCTGCTCTTTTTATCTCGCCTCCCCTGCGCATTTC
CTTTCTTGGTAGACGAGGGTTGTTTTCTAGAGAGGGAATGGCGACTGAAGTTCAGGAGCC
GGCTAACGGAAATCTGAAGAAAGAGGAGGCAGAGCCCTTGGGAGAGCTCAGAGGGAAGGA
AGACTTGAAGCAGGCACCTGCGGATCTGTGCCATGCTGGGGATGTGAACGGCTGCGAGCC
TGTTGCAGAAAAGGAGGAGCCACTGAAGAAGGTACCCACTCCCAACAAGCAAAAAGGTAT
TGTTCTCGATGGTGTAGATGAAGAGGGTGCCACTGAGCCTCAAGATGGCAATGACTACTC
TAGTGAGGAGGAGGAAGGAGATGGAGAAGGGGAGGAAGATGCCAGGGAGGGAGATAGTGA
ACCATATGAGGAAGAGAATGATGAGGAGTATGCAGATGATGGGGAGGATGATGAC
■■Homology search results ■■ -
sp_hit_id O77788
Definition sp|O77788|NFM_BOVIN Neurofilament medium polypeptide OS=Bos taurus
Align length 81
Score (bit) 34.3
E-value 0.59
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948569|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_K16, 5'
         (655 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O77788|NFM_BOVIN Neurofilament medium polypeptide OS=Bos taur...    34   0.59 
sp|Q6AWG9|Y5098_DROME Uncharacterized protein CG5098 OS=Drosophi...    32   2.2  
sp|Q2SEP8|HUTI_HAHCH Imidazolonepropionase OS=Hahella chejuensis...    32   2.9  
sp|P80198|HOG3_HORVU Gamma-hordein-3 OS=Hordeum vulgare PE=1 SV=1      32   3.8  
sp|A8K8P3|SFI1_HUMAN Protein SFI1 homolog OS=Homo sapiens GN=SFI...    31   5.0  
sp|Q9PU97|PA27_BUNMU Phospholipase A2, beta bungarotoxin A7 chai...    31   6.5  
sp|Q9UPV0|CE164_HUMAN Centrosomal protein of 164 kDa OS=Homo sap...    31   6.5  

>sp|O77788|NFM_BOVIN Neurofilament medium polypeptide OS=Bos taurus
           GN=NEFM PE=1 SV=3
          Length = 926

 Score = 34.3 bits (77), Expect = 0.59
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
 Frame = +2

Query: 266 SREGMATEVQEPANGNLKKEEAEPLGELRGKED--LKQA-PADLCHAGDVNGCEPVAEKE 436
           S E  A E ++P     +KE+ E +G   GKE+  LK++   D+   G+V G E   E++
Sbjct: 771 SPEKEAKEEEKPQEKEKEKEKVEEVG---GKEEGGLKESRKEDIAINGEVEGKE---EEQ 824

Query: 437 EPLKKVPTPNKQKGIVLDGVD 499
           E  +K     ++KG+V +G+D
Sbjct: 825 ETKEKGSGGEEEKGVVTNGLD 845


>sp|Q6AWG9|Y5098_DROME Uncharacterized protein CG5098 OS=Drosophila
           melanogaster GN=CG5098 PE=1 SV=1
          Length = 1238

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 521 EAQWHPLHLHHREQYLFACWEWVPSSVAPPFLQQARSRSHPQHGTDPQ 378
           ++Q HP HLH+  Q+  A  +  P  + PP L   +  + PQ  +  Q
Sbjct: 282 QSQSHPQHLHYHNQH--ATSQTAPPPLLPPLLTSGQFHAQPQDASQQQ 327


>sp|Q2SEP8|HUTI_HAHCH Imidazolonepropionase OS=Hahella chejuensis
           (strain KCTC 2396) GN=hutI PE=3 SV=1
          Length = 403

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 23/100 (23%), Positives = 35/100 (35%)
 Frame = +1

Query: 166 SCPVLDLTASLGLSCSFYLASPAHFLSW*TRVVF*RGNGD*SSGAG*RKSEERGGRALGR 345
           SCP+  +   + + C+F+  +P   L+  TR                      G +ALG 
Sbjct: 318 SCPLASMRLMMNMGCTFFGMTPEETLAGVTR---------------------HGAKALGM 356

Query: 346 AQREGRLEAGTCGSVPCWGCERLRACCRKGGATEEGTHSQ 465
             R G L  G       W C+       + G T  G H +
Sbjct: 357 QDRIGHLAPGMAADFIVWDCQHPAQLSYEFGVT--GPHQR 394


>sp|P80198|HOG3_HORVU Gamma-hordein-3 OS=Hordeum vulgare PE=1 SV=1
          Length = 289

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 515 QWHPLHLH-HREQYLFACWEWVPSSVAPPFLQQARSRSHPQHGTDPQ 378
           Q++P  L   R Q LF  W+ +P    PPFLQQ   + +PQ    PQ
Sbjct: 7   QFNPSGLELERPQQLFPQWQPLPQQ--PPFLQQEPEQPYPQQQPLPQ 51


>sp|A8K8P3|SFI1_HUMAN Protein SFI1 homolog OS=Homo sapiens GN=SFI1
           PE=1 SV=2
          Length = 1242

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 518 AQWHPLHLHHREQYLFACWEWVPSSVAPPFLQQ-ARSRSHPQHG 390
           AQ+     HHR   L+ C+  +  +V    LQQ  R+ +H QHG
Sbjct: 371 AQFEMAEEHHRHSQLYFCFRALKDNVTHAHLQQIRRNLAHQQHG 414


>sp|Q9PU97|PA27_BUNMU Phospholipase A2, beta bungarotoxin A7 chain
           (Fragment) OS=Bungarus multicinctus PE=2 SV=1
          Length = 137

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 370 AGTCGSVPCWGCERLRACCRKGGATEEGTHSQQAKRYC 483
           AGTCG + C  C+R  A C       EG  +   KR+C
Sbjct: 100 AGTCGRIVC-DCDRTAALCFGNSEYIEGHKNIDTKRHC 136


>sp|Q9UPV0|CE164_HUMAN Centrosomal protein of 164 kDa OS=Homo
           sapiens GN=CEP164 PE=1 SV=3
          Length = 1460

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
 Frame = +2

Query: 248 GRRGLFSREGMA----TEVQEPAN-GNLKKEEAEPLGELRGKEDLKQAPADLCHAGDVNG 412
           GR+G  +R G+      E  EP    NL   +A+P G    K   K+AP D   AG+   
Sbjct: 300 GRQGSGARPGLPEKEENEKSEPKICRNLVTPKADPTGSEPAKASEKEAPEDTVDAGEEGS 359

Query: 413 CEPVAEKEEPLKK 451
               A K EP KK
Sbjct: 360 RREEAAK-EPKKK 371
tr_hit_id Q2HE53
Definition tr|Q2HE53|Q2HE53_CHAGB Putative uncharacterized protein OS=Chaetomium globosum
Align length 88
Score (bit) 37.7
E-value 0.62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948569|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_K16, 5'
         (655 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2HE53|Q2HE53_CHAGB Putative uncharacterized protein OS=Chaet...    38   0.62 
tr|Q7PYF9|Q7PYF9_ANOGA AGAP001923-PA (Fragment) OS=Anopheles gam...    36   2.4  
tr|B7DKQ2|B7DKQ2_DESSA Translation initiation factor IF-2 domain...    35   3.1  
tr|Q57WY4|Q57WY4_9TRYP Putative uncharacterized protein OS=Trypa...    35   4.0  
tr|B3ZUE1|B3ZUE1_BACCE Putative internalin OS=Bacillus cereus 03...    35   5.3  
tr|Q4XZ17|Q4XZ17_PLACH Putative uncharacterized protein (Fragmen...    35   5.3  
tr|Q5A1W9|Q5A1W9_CANAL Putative uncharacterized protein HST3 OS=...    34   6.9  
tr|Q3SYW3|Q3SYW3_BOVIN Hematopoietic cell-specific Lyn substrate...    34   9.0  

>tr|Q2HE53|Q2HE53_CHAGB Putative uncharacterized protein OS=Chaetomium
            globosum GN=CHGG_01501 PE=4 SV=1
          Length = 6459

 Score = 37.7 bits (86), Expect = 0.62
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 9/88 (10%)
 Frame = +2

Query: 287  EVQEPANGNLKKEEAEPLGEL---------RGKEDLKQAPADLCHAGDVNGCEPVAEKEE 439
            E+Q+P+  +  + E  P G +         +GKE  +  P  L  A  V G  PV EK  
Sbjct: 4417 EIQQPSENSQPQPEVVPQGAMVEEVPETLTKGKEAFEPEPVSLPEAALVEGVIPVIEKPA 4476

Query: 440  PLKKVPTPNKQKGIVLDGVDEEGATEPQ 523
            P  + P P  ++ I    V EE +  PQ
Sbjct: 4477 PGAEEPAPALKETI---AVPEESSQLPQ 4501


>tr|Q7PYF9|Q7PYF9_ANOGA AGAP001923-PA (Fragment) OS=Anopheles
           gambiae GN=AGAP001923 PE=4 SV=4
          Length = 723

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 21/56 (37%), Positives = 30/56 (53%)
 Frame = +2

Query: 293 QEPANGNLKKEEAEPLGELRGKEDLKQAPADLCHAGDVNGCEPVAEKEEPLKKVPT 460
           Q+P +G +K+EE  PL  L  +  +  APAD+          P AEK++P K V T
Sbjct: 656 QQPPDGEIKEEENVPLPPLPVEVPVDVAPADVA---------PAAEKQQPRKPVDT 702


>tr|B7DKQ2|B7DKQ2_DESSA Translation initiation factor IF-2 domain
           protein OS=Desulfovibrio salexigens DSM 2638
           GN=DesalDRAFT_3469 PE=4 SV=1
          Length = 202

 Score = 35.4 bits (80), Expect = 3.1
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +2

Query: 275 GMATEVQEPANGNLKKEEAEPLGELRGKEDLKQAPADLCHAGDVNGCEPVAEKEEPLKKV 454
           G+    ++   G  K EEAE   E   KE+ K+APA+          E   EK++P KK 
Sbjct: 66  GVIVRRRKGGRGKAKAEEAETAKEAPAKEEKKEAPAEKKQEA---AKEKAPEKKKPAKKA 122

Query: 455 PTPNKQ 472
           P  +++
Sbjct: 123 PAKSEK 128


>tr|Q57WY4|Q57WY4_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb927.3.1010 PE=4 SV=1
          Length = 600

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 353 GKEDLKQAPA-DLCHAGDVNGCEPVAEKEEPLKKV-PTPNKQKGIVLDGVDEEGATEPQ 523
           G+ED   A A D C  GD+NG     EK+   KKV   P     +V D   E+ A  PQ
Sbjct: 181 GEEDEVAAAARDECDVGDINGNTSKKEKKSAKKKVKKLPKAVASLVTDEASEQAAAAPQ 239


>tr|B3ZUE1|B3ZUE1_BACCE Putative internalin OS=Bacillus cereus 03BB108
            GN=BC03BB108_0503 PE=4 SV=1
          Length = 1098

 Score = 34.7 bits (78), Expect = 5.3
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 272  EGMATEVQEPANG--NLKKEEAEPLGELRGKEDLKQAPADLCHAGDVNGCEPVAEKEEPL 445
            EG   E +EPA      K+E  EP  E+ G ++  + PA           EP  E E P 
Sbjct: 875  EGSKEEPKEPAKEVEGSKEEPKEPAKEVEGSKEEPKEPAKEVEGSKEEVKEPAKEVEGPK 934

Query: 446  KKVPTPNKQKGIVLDGVDEE 505
            ++V  P K+    ++G  EE
Sbjct: 935  EEVKEPTKE----VEGPKEE 950


>tr|Q4XZ17|Q4XZ17_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC000562.02.0 PE=4 SV=1
          Length = 543

 Score = 34.7 bits (78), Expect = 5.3
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
 Frame = +2

Query: 269 REGMATEVQEPANGNLKKEEAEPLGELRGKEDLKQAPAD---LCHAGDVNGCEPVAEKEE 439
           R+    E+Q+ A+   KK + + + E+R + DLK A A    L +  ++N     +    
Sbjct: 291 RDQSIKEIQKEASQQAKKIQNKDMNEMRNENDLKHAHATTNLLQYDSEINSDTKKSNTSN 350

Query: 440 PLKKVPTPNKQKGIVLDGVD 499
           P  K    ++ K I+L+ +D
Sbjct: 351 PQSKTTPTSEGKNIMLEIID 370


>tr|Q5A1W9|Q5A1W9_CANAL Putative uncharacterized protein HST3
           OS=Candida albicans GN=HST3 PE=4 SV=1
          Length = 487

 Score = 34.3 bits (77), Expect = 6.9
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 281 ATEVQEPANGNLKKEEAEP-LGELRGKEDLKQAPADLCHAGDVNGCEPVAEKEEPLKKVP 457
           AT+++  +   +   E    +  LR + D   +PA       +NG E   E++EP+ KV 
Sbjct: 420 ATKLKRKSPDEISANEVHSRVKRLRPRNDQLSSPAS-----SINGSEEEEEEDEPVAKVL 474

Query: 458 TPNKQKGIVLD 490
             N +KGI LD
Sbjct: 475 FENARKGITLD 485


>tr|Q3SYW3|Q3SYW3_BOVIN Hematopoietic cell-specific Lyn substrate 1
           OS=Bos taurus GN=HCLS1 PE=2 SV=1
          Length = 485

 Score = 33.9 bits (76), Expect = 9.0
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +2

Query: 227 PLRISFLGRRGLFSR-EGMATEVQEPANGNLKKEEAEPLGELRGKEDLKQAPADLCHAGD 403
           P+  +  G RGL ++ E MA E +       K+EE E   ++  ++  ++A   + H   
Sbjct: 227 PIEAASSGARGLKAKFESMAEEKR-------KREEEEKAQQMARQQQERKALVKMSHEAQ 279

Query: 404 VNGCEPVAEKEEPLKKVPTPNK 469
               +PVA +EEP    P P K
Sbjct: 280 ----QPVATREEPAAPAPLPKK 297