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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK948593
Clone id TST38A01NGRL0003_L16
Library
Length 667
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0003_L16. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AAAGACCTGGGTATTTCGGGATACTTAACAAATTTTATGCAAGGTAGAGAAAATACTATT
TAGATAGATCTCAATGCAAACCGGTTAGTTTCATCTTACTTCACCTTCAATTATTTTTAT
TCCAAGTTTTGAAATATCTTTGCTATGCTTAGTGGGCGACTCGTTGAAAATACAAATTTT
TGCCCGTAAAATAAAAGACCTAATTGAAAGTGAAAGTTAAACCCTCCTTTTGTTGATCAG
TATTCAATAAACAAGCCCTCAATGCAGGGGAAAATTACAACTTCTTTCACCACACAAACT
TTCTTTCTCTTTCCATCCTTATAAAATTTTTCTATGGAAAAGCCGGAATCAGGAAGCACT
GTAATATTATTTCACGGAAATTTGAGGAACTAATATATCTCAAATTTTTTCCTCGCAACT
AGTCGTATGGTTAATTGTCTAACTCTTAATATATTACGTAATGTAGCAAGACTACTAAAA
AGTCAGGGGAGAGCTTTGAGTCCACTAATACTGGGAACGCCGACTCAATAAAACTGAGAT
AGAATGTAGTACTACAGCTTCTTTGTCGAAAGAGAGAACCTAAACGTCTGCTCAAAAAGA
TTGAAACAACGAGGAAACTTCCGAATCTGATTCAACAGTGAATAGTGAGATCTGGTACTT
GGGATGG
■■Homology search results ■■ -
sp_hit_id A4QLH6
Definition sp|A4QLH6|MATK_LOBMA Maturase K OS=Lobularia maritima
Align length 59
Score (bit) 32.3
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948593|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_L16, 5'
         (667 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4QLH6|MATK_LOBMA Maturase K OS=Lobularia maritima GN=matK PE...    32   2.3  
sp|A4QKR2|MATK_CRUWA Maturase K OS=Crucihimalaya wallichii GN=ma...    32   3.0  
sp|Q9GF51|MATK_ARAHA Maturase K OS=Arabidopsis halleri GN=matK P...    32   3.0  
sp|Q9GF59|MATK_ARAGL Maturase K OS=Arabis glabra GN=matK PE=3 SV=1     32   3.0  
sp|Q9GF63|MATK_ARAAL Maturase K OS=Arabis alpina GN=matK PE=3 SV=1     32   3.0  
sp|Q9GF32|MATK_ALLPE Maturase K OS=Alliaria petiolata GN=matK PE...    32   3.0  
sp|Q9GF35|MATK_THLAR Maturase K OS=Thlaspi arvense GN=matK PE=3 ...    32   4.0  
sp|Q9GF47|MATK_OLIPU Maturase K OS=Olimarabidopsis pumila GN=mat...    32   4.0  
sp|A4QKH3|MATK_CAPBU Maturase K OS=Capsella bursa-pastoris GN=ma...    32   4.0  
sp|Q9GF50|MATK_ARALY Maturase K OS=Arabidopsis lyrata GN=matK PE...    32   4.0  
sp|Q9GF37|MATK_ARAKO Maturase K OS=Arabidopsis korshinskyi GN=ma...    32   4.0  
sp|P09364|MATK_SINAL Maturase K OS=Sinapis alba GN=matK PE=1 SV=2      31   5.2  
sp|Q9GF34|MATK_MATIN Maturase K OS=Matthiola incana GN=matK PE=3...    31   5.2  
sp|Q9GF45|MATK_ARATU Maturase K OS=Arabis turrita GN=matK PE=3 SV=1    31   5.2  
sp|Q9GF29|MATK_SISIR Maturase K OS=Sisymbrium irio GN=matK PE=3 ...    31   6.8  
sp|Q9GF36|MATK_LEPCM Maturase K OS=Lepidium campestre GN=matK PE...    31   6.8  
sp|P56784|MATK_ARATH Maturase K OS=Arabidopsis thaliana GN=matK ...    31   6.8  
sp|A4QK00|MATK_ARAHI Maturase K OS=Arabis hirsuta GN=matK PE=3 SV=1    31   6.8  
sp|Q9GF40|MATK_ARABL Maturase K OS=Arabis blepharophylla GN=matK...    31   6.8  

>sp|A4QLH6|MATK_LOBMA Maturase K OS=Lobularia maritima GN=matK PE=3
           SV=1
          Length = 504

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 613 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFLV-VLLHYVIY*EL 440
           ++V I  S RLGS F  +    ++ L  I S FP L D     +++V VL+ Y I+ E+
Sbjct: 105 VIVEIPFSLRLGSSFEGKQLKKSYNLQSIHSIFPFLEDKLSHFNYVVDVLIPYPIHLEI 163


>sp|A4QKR2|MATK_CRUWA Maturase K OS=Crucihimalaya wallichii GN=matK
           PE=3 SV=2
          Length = 504

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -1

Query: 613 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFLV-VLLHYVIY*EL 440
           ++V I  S RLGS F+ +    ++ L  I S FP L D     ++++ VL+ Y I+ E+
Sbjct: 105 VIVEIPFSLRLGSSFQGKQLKKSYNLQSIHSIFPFLEDKLAHFNYVLDVLIPYPIHLEI 163


>sp|Q9GF51|MATK_ARAHA Maturase K OS=Arabidopsis halleri GN=matK PE=3
           SV=1
          Length = 504

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -1

Query: 613 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFLV-VLLHYVIY*EL 440
           ++V I  S RLGS F+ +    ++ L  I S FP L D     ++++ VL+ Y I+ E+
Sbjct: 105 VIVEIPFSLRLGSSFQGKQLKKSYNLQSIHSIFPFLEDKLAHFNYVLDVLIPYPIHLEI 163


>sp|Q9GF59|MATK_ARAGL Maturase K OS=Arabis glabra GN=matK PE=3 SV=1
          Length = 504

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -1

Query: 613 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFLV-VLLHYVIY*EL 440
           ++V I  S RLGS F+ +    ++ L  I S FP L D     ++++ VL+ Y I+ E+
Sbjct: 105 VIVEIPFSLRLGSSFQGKQLKKSYNLQSIHSIFPFLEDKLAHFNYVLDVLIPYPIHLEI 163


>sp|Q9GF63|MATK_ARAAL Maturase K OS=Arabis alpina GN=matK PE=3 SV=1
          Length = 506

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 613 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFLV-VLLHYVIY*EL 440
           ++V I  S RLGS F  +    ++ L  I S FP L D     ++++ VL+ Y I+ E+
Sbjct: 107 VIVEIPFSLRLGSSFEGKQLKKSYNLQSIHSIFPFLEDKFSHSNYVLDVLIPYPIHLEI 165


>sp|Q9GF32|MATK_ALLPE Maturase K OS=Alliaria petiolata GN=matK PE=3
           SV=1
          Length = 504

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 613 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFLV-VLLHYVIY*EL 440
           ++V I  S RLGS F  +    ++ L  I S FP L D     ++++ VL+ Y I+ E+
Sbjct: 105 VIVEIQFSLRLGSSFEGKQLKKSYNLQSIHSIFPFLEDKLTHFNYVLDVLIPYPIHLEI 163


>sp|Q9GF35|MATK_THLAR Maturase K OS=Thlaspi arvense GN=matK PE=3
           SV=1
          Length = 504

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 613 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFLV-VLLHYVIY*EL 440
           ++V I  S RLGS F  +    ++ L  I S FP L D     ++++ VL+ Y I+ E+
Sbjct: 105 VIVEIPFSLRLGSSFEGKQLKKSYNLQSIHSIFPFLEDKLTHFNYVLDVLIPYPIHLEI 163


>sp|Q9GF47|MATK_OLIPU Maturase K OS=Olimarabidopsis pumila GN=matK
           PE=3 SV=2
          Length = 504

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -1

Query: 613 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFLV-VLLHYVIY*EL 440
           ++V I  S RLGS F+ +    ++ L  I S FP L D     ++++ VL+ Y I+ E+
Sbjct: 105 VIVEIPFSLRLGSPFQGKQVKKSYNLQSIHSIFPFLEDKLAHFNYVLDVLIPYPIHLEI 163


>sp|A4QKH3|MATK_CAPBU Maturase K OS=Capsella bursa-pastoris GN=matK
           PE=3 SV=2
          Length = 504

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -1

Query: 613 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPD-FLVVLLHYVIY*EL 440
           ++V I  S+RLGS F+ +    ++ L  I S FP L D     +  L VL+ Y I+ E+
Sbjct: 105 VIVEIPFSKRLGSSFQGKQLKKSYNLQSIHSIFPFLEDKLAHFNCVLDVLIPYPIHLEI 163


>sp|Q9GF50|MATK_ARALY Maturase K OS=Arabidopsis lyrata GN=matK PE=3
           SV=1
          Length = 504

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = -1

Query: 613 LVVSIFLSRRLGSLFRQRSCSTTFYLSFIESAFPVLVDSKLSPDFLV-VLLHYVIY*EL 440
           ++V I  S RLGS F+ +    ++ L  I S FP L D     ++++ VL+ Y I+ E+
Sbjct: 105 VIVEIPFSLRLGSSFQGKQFKKSYNLQSIHSIFPFLEDKLAHFNYVLDVLIPYPIHLEI 163
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK948593|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0003_L16, 5'
         (667 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******